HEADER TRANSFERASE 27-MAR-07 2ELC TITLE CRYSTAL STRUCTURE OF TTHA1842 FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRP D; COMPND 5 EC: 2.4.2.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS TRANSFERASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR K.SHIMIZU,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2ELC 1 LINK REVDAT 3 13-JUL-11 2ELC 1 VERSN REVDAT 2 24-FEB-09 2ELC 1 VERSN REVDAT 1 02-OCT-07 2ELC 0 JRNL AUTH K.SHIMIZU,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF TTHA1842 FROM THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2953546.730 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 198639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 9764 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 31287 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1599 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 1569 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.650 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.720 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 57.13 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GOL.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ELC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 198639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : 0.24100 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1V8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.85M NA FORMIC ACID, 0.1M CITRIC REMARK 280 ACID, PH 5.6, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.65950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.45650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.65950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.45650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1 N REMARK 480 GLU A 11 OE1 REMARK 480 ARG A 115 CZ NH1 NH2 REMARK 480 LYS A 235 NZ REMARK 480 LEU B 318 CD2 REMARK 480 ALA C 112 CB REMARK 480 SER C 113 CB OG REMARK 480 ARG C 115 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU C 196 CD OE1 OE2 REMARK 480 MET D 1 N REMARK 480 ARG D 67 CD REMARK 480 SER D 113 CB OG REMARK 480 SER D 114 CB OG REMARK 480 ARG D 115 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU D 227 OE2 REMARK 480 LYS D 256 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 227 NH2 ARG C 249 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 50 CG HIS A 50 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 113 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 VAL A 189 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG B 48 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 VAL B 189 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 VAL C 189 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 VAL D 189 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 66 107.46 -162.88 REMARK 500 ALA A 112 -30.14 -33.97 REMARK 500 SER A 114 37.14 -69.87 REMARK 500 ARG A 115 49.88 26.55 REMARK 500 HIS A 154 62.01 -119.63 REMARK 500 VAL A 160 -30.37 -131.25 REMARK 500 ASP A 221 44.50 -87.76 REMARK 500 LYS A 235 -43.95 -133.48 REMARK 500 SER B 113 -163.41 168.43 REMARK 500 HIS B 154 64.88 -118.57 REMARK 500 GLU B 218 55.78 38.90 REMARK 500 ASP B 221 43.92 -87.92 REMARK 500 LEU B 225 58.74 -92.03 REMARK 500 LYS B 235 -72.23 -117.55 REMARK 500 SER C 113 58.01 -153.38 REMARK 500 ALA C 116 -12.31 -141.44 REMARK 500 ASP C 221 41.38 -89.38 REMARK 500 LYS C 235 -72.84 -104.01 REMARK 500 SER D 114 -9.55 -52.25 REMARK 500 ASP D 221 45.72 -90.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 113 SER A 114 -34.18 REMARK 500 SER A 114 ARG A 115 -143.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B2100 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 273 O REMARK 620 2 HOH B2158 O 80.1 REMARK 620 3 HOH B2219 O 80.3 91.2 REMARK 620 4 HOH B2281 O 106.3 87.6 173.0 REMARK 620 5 HOH B2344 O 173.4 94.4 96.3 76.9 REMARK 620 6 HOH B2360 O 100.0 174.4 94.4 87.0 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D2101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D2124 O REMARK 620 2 HOH D2289 O 86.4 REMARK 620 3 HOH D2394 O 97.0 71.4 REMARK 620 4 HOH D2420 O 94.1 173.5 115.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000014.2 RELATED DB: TARGETDB DBREF 2ELC A 1 329 UNP Q5SH88 TRPD_THET8 1 329 DBREF 2ELC B 1 329 UNP Q5SH88 TRPD_THET8 1 329 DBREF 2ELC C 1 329 UNP Q5SH88 TRPD_THET8 1 329 DBREF 2ELC D 1 329 UNP Q5SH88 TRPD_THET8 1 329 SEQRES 1 A 329 MET ASP ALA VAL LYS LYS ALA ILE LEU GLY GLU VAL LEU SEQRES 2 A 329 GLU GLU GLU GLU ALA TYR GLU VAL MET ARG ALA LEU MET SEQRES 3 A 329 ALA GLY GLU VAL SER PRO VAL ARG ALA ALA GLY LEU LEU SEQRES 4 A 329 VAL ALA LEU SER LEU ARG GLY GLU ARG PRO HIS GLU ILE SEQRES 5 A 329 ALA ALA MET ALA ARG ALA MET ARG GLU ALA ALA ARG PRO SEQRES 6 A 329 LEU ARG VAL HIS ARG ARG PRO LEU LEU ASP ILE VAL GLY SEQRES 7 A 329 THR GLY GLY ASP GLY LYS GLY LEU MET ASN LEU SER THR SEQRES 8 A 329 LEU ALA ALA LEU VAL ALA ALA ALA GLY GLY VAL ALA VAL SEQRES 9 A 329 ALA LYS HIS GLY ASN ARG ALA ALA SER SER ARG ALA GLY SEQRES 10 A 329 SER ALA ASP LEU LEU GLU ALA LEU GLY VAL ASP LEU GLU SEQRES 11 A 329 ALA PRO PRO GLU ARG VAL GLY GLU ALA ILE GLU GLU LEU SEQRES 12 A 329 GLY PHE GLY PHE LEU PHE ALA ARG VAL PHE HIS PRO ALA SEQRES 13 A 329 MET ARG HIS VAL ALA PRO VAL ARG ALA GLU LEU GLY VAL SEQRES 14 A 329 ARG THR VAL PHE ASN LEU LEU GLY PRO LEU THR ASN PRO SEQRES 15 A 329 ALA GLY ALA ASP ALA TYR VAL LEU GLY VAL PHE SER PRO SEQRES 16 A 329 GLU TRP LEU ALA PRO MET ALA GLU ALA LEU GLU ARG LEU SEQRES 17 A 329 GLY ALA ARG GLY LEU VAL VAL HIS GLY GLU GLY ALA ASP SEQRES 18 A 329 GLU LEU VAL LEU GLY GLU ASN ARG VAL VAL GLU VAL GLY SEQRES 19 A 329 LYS GLY ALA TYR ALA LEU THR PRO GLU GLU VAL GLY LEU SEQRES 20 A 329 LYS ARG ALA PRO LEU GLU ALA LEU LYS GLY GLY GLY PRO SEQRES 21 A 329 GLU GLU ASN ALA ALA LEU ALA ARG ARG LEU LEU LYS GLY SEQRES 22 A 329 GLU GLU LYS GLY PRO LEU ALA ASP ALA VAL ALA LEU ALA SEQRES 23 A 329 ALA GLY ALA GLY PHE TYR ALA ALA GLY LYS THR PRO SER SEQRES 24 A 329 LEU LYS GLU GLY VAL ALA LEU ALA ARG GLU VAL LEU ALA SEQRES 25 A 329 SER GLY GLU ALA TYR LEU LEU LEU GLU ARG TYR VAL ALA SEQRES 26 A 329 PHE LEU ARG ALA SEQRES 1 B 329 MET ASP ALA VAL LYS LYS ALA ILE LEU GLY GLU VAL LEU SEQRES 2 B 329 GLU GLU GLU GLU ALA TYR GLU VAL MET ARG ALA LEU MET SEQRES 3 B 329 ALA GLY GLU VAL SER PRO VAL ARG ALA ALA GLY LEU LEU SEQRES 4 B 329 VAL ALA LEU SER LEU ARG GLY GLU ARG PRO HIS GLU ILE SEQRES 5 B 329 ALA ALA MET ALA ARG ALA MET ARG GLU ALA ALA ARG PRO SEQRES 6 B 329 LEU ARG VAL HIS ARG ARG PRO LEU LEU ASP ILE VAL GLY SEQRES 7 B 329 THR GLY GLY ASP GLY LYS GLY LEU MET ASN LEU SER THR SEQRES 8 B 329 LEU ALA ALA LEU VAL ALA ALA ALA GLY GLY VAL ALA VAL SEQRES 9 B 329 ALA LYS HIS GLY ASN ARG ALA ALA SER SER ARG ALA GLY SEQRES 10 B 329 SER ALA ASP LEU LEU GLU ALA LEU GLY VAL ASP LEU GLU SEQRES 11 B 329 ALA PRO PRO GLU ARG VAL GLY GLU ALA ILE GLU GLU LEU SEQRES 12 B 329 GLY PHE GLY PHE LEU PHE ALA ARG VAL PHE HIS PRO ALA SEQRES 13 B 329 MET ARG HIS VAL ALA PRO VAL ARG ALA GLU LEU GLY VAL SEQRES 14 B 329 ARG THR VAL PHE ASN LEU LEU GLY PRO LEU THR ASN PRO SEQRES 15 B 329 ALA GLY ALA ASP ALA TYR VAL LEU GLY VAL PHE SER PRO SEQRES 16 B 329 GLU TRP LEU ALA PRO MET ALA GLU ALA LEU GLU ARG LEU SEQRES 17 B 329 GLY ALA ARG GLY LEU VAL VAL HIS GLY GLU GLY ALA ASP SEQRES 18 B 329 GLU LEU VAL LEU GLY GLU ASN ARG VAL VAL GLU VAL GLY SEQRES 19 B 329 LYS GLY ALA TYR ALA LEU THR PRO GLU GLU VAL GLY LEU SEQRES 20 B 329 LYS ARG ALA PRO LEU GLU ALA LEU LYS GLY GLY GLY PRO SEQRES 21 B 329 GLU GLU ASN ALA ALA LEU ALA ARG ARG LEU LEU LYS GLY SEQRES 22 B 329 GLU GLU LYS GLY PRO LEU ALA ASP ALA VAL ALA LEU ALA SEQRES 23 B 329 ALA GLY ALA GLY PHE TYR ALA ALA GLY LYS THR PRO SER SEQRES 24 B 329 LEU LYS GLU GLY VAL ALA LEU ALA ARG GLU VAL LEU ALA SEQRES 25 B 329 SER GLY GLU ALA TYR LEU LEU LEU GLU ARG TYR VAL ALA SEQRES 26 B 329 PHE LEU ARG ALA SEQRES 1 C 329 MET ASP ALA VAL LYS LYS ALA ILE LEU GLY GLU VAL LEU SEQRES 2 C 329 GLU GLU GLU GLU ALA TYR GLU VAL MET ARG ALA LEU MET SEQRES 3 C 329 ALA GLY GLU VAL SER PRO VAL ARG ALA ALA GLY LEU LEU SEQRES 4 C 329 VAL ALA LEU SER LEU ARG GLY GLU ARG PRO HIS GLU ILE SEQRES 5 C 329 ALA ALA MET ALA ARG ALA MET ARG GLU ALA ALA ARG PRO SEQRES 6 C 329 LEU ARG VAL HIS ARG ARG PRO LEU LEU ASP ILE VAL GLY SEQRES 7 C 329 THR GLY GLY ASP GLY LYS GLY LEU MET ASN LEU SER THR SEQRES 8 C 329 LEU ALA ALA LEU VAL ALA ALA ALA GLY GLY VAL ALA VAL SEQRES 9 C 329 ALA LYS HIS GLY ASN ARG ALA ALA SER SER ARG ALA GLY SEQRES 10 C 329 SER ALA ASP LEU LEU GLU ALA LEU GLY VAL ASP LEU GLU SEQRES 11 C 329 ALA PRO PRO GLU ARG VAL GLY GLU ALA ILE GLU GLU LEU SEQRES 12 C 329 GLY PHE GLY PHE LEU PHE ALA ARG VAL PHE HIS PRO ALA SEQRES 13 C 329 MET ARG HIS VAL ALA PRO VAL ARG ALA GLU LEU GLY VAL SEQRES 14 C 329 ARG THR VAL PHE ASN LEU LEU GLY PRO LEU THR ASN PRO SEQRES 15 C 329 ALA GLY ALA ASP ALA TYR VAL LEU GLY VAL PHE SER PRO SEQRES 16 C 329 GLU TRP LEU ALA PRO MET ALA GLU ALA LEU GLU ARG LEU SEQRES 17 C 329 GLY ALA ARG GLY LEU VAL VAL HIS GLY GLU GLY ALA ASP SEQRES 18 C 329 GLU LEU VAL LEU GLY GLU ASN ARG VAL VAL GLU VAL GLY SEQRES 19 C 329 LYS GLY ALA TYR ALA LEU THR PRO GLU GLU VAL GLY LEU SEQRES 20 C 329 LYS ARG ALA PRO LEU GLU ALA LEU LYS GLY GLY GLY PRO SEQRES 21 C 329 GLU GLU ASN ALA ALA LEU ALA ARG ARG LEU LEU LYS GLY SEQRES 22 C 329 GLU GLU LYS GLY PRO LEU ALA ASP ALA VAL ALA LEU ALA SEQRES 23 C 329 ALA GLY ALA GLY PHE TYR ALA ALA GLY LYS THR PRO SER SEQRES 24 C 329 LEU LYS GLU GLY VAL ALA LEU ALA ARG GLU VAL LEU ALA SEQRES 25 C 329 SER GLY GLU ALA TYR LEU LEU LEU GLU ARG TYR VAL ALA SEQRES 26 C 329 PHE LEU ARG ALA SEQRES 1 D 329 MET ASP ALA VAL LYS LYS ALA ILE LEU GLY GLU VAL LEU SEQRES 2 D 329 GLU GLU GLU GLU ALA TYR GLU VAL MET ARG ALA LEU MET SEQRES 3 D 329 ALA GLY GLU VAL SER PRO VAL ARG ALA ALA GLY LEU LEU SEQRES 4 D 329 VAL ALA LEU SER LEU ARG GLY GLU ARG PRO HIS GLU ILE SEQRES 5 D 329 ALA ALA MET ALA ARG ALA MET ARG GLU ALA ALA ARG PRO SEQRES 6 D 329 LEU ARG VAL HIS ARG ARG PRO LEU LEU ASP ILE VAL GLY SEQRES 7 D 329 THR GLY GLY ASP GLY LYS GLY LEU MET ASN LEU SER THR SEQRES 8 D 329 LEU ALA ALA LEU VAL ALA ALA ALA GLY GLY VAL ALA VAL SEQRES 9 D 329 ALA LYS HIS GLY ASN ARG ALA ALA SER SER ARG ALA GLY SEQRES 10 D 329 SER ALA ASP LEU LEU GLU ALA LEU GLY VAL ASP LEU GLU SEQRES 11 D 329 ALA PRO PRO GLU ARG VAL GLY GLU ALA ILE GLU GLU LEU SEQRES 12 D 329 GLY PHE GLY PHE LEU PHE ALA ARG VAL PHE HIS PRO ALA SEQRES 13 D 329 MET ARG HIS VAL ALA PRO VAL ARG ALA GLU LEU GLY VAL SEQRES 14 D 329 ARG THR VAL PHE ASN LEU LEU GLY PRO LEU THR ASN PRO SEQRES 15 D 329 ALA GLY ALA ASP ALA TYR VAL LEU GLY VAL PHE SER PRO SEQRES 16 D 329 GLU TRP LEU ALA PRO MET ALA GLU ALA LEU GLU ARG LEU SEQRES 17 D 329 GLY ALA ARG GLY LEU VAL VAL HIS GLY GLU GLY ALA ASP SEQRES 18 D 329 GLU LEU VAL LEU GLY GLU ASN ARG VAL VAL GLU VAL GLY SEQRES 19 D 329 LYS GLY ALA TYR ALA LEU THR PRO GLU GLU VAL GLY LEU SEQRES 20 D 329 LYS ARG ALA PRO LEU GLU ALA LEU LYS GLY GLY GLY PRO SEQRES 21 D 329 GLU GLU ASN ALA ALA LEU ALA ARG ARG LEU LEU LYS GLY SEQRES 22 D 329 GLU GLU LYS GLY PRO LEU ALA ASP ALA VAL ALA LEU ALA SEQRES 23 D 329 ALA GLY ALA GLY PHE TYR ALA ALA GLY LYS THR PRO SER SEQRES 24 D 329 LEU LYS GLU GLY VAL ALA LEU ALA ARG GLU VAL LEU ALA SEQRES 25 D 329 SER GLY GLU ALA TYR LEU LEU LEU GLU ARG TYR VAL ALA SEQRES 26 D 329 PHE LEU ARG ALA HET GOL A2003 6 HET GOL A2004 6 HET GOL A2010 6 HET GOL A2012 6 HET NA B2100 1 HET GOL B2000 6 HET GOL B2011 6 HET GOL B2013 6 HET GOL C2001 6 HET GOL C2006 6 HET GOL C2007 6 HET NA D2101 1 HET GOL D2008 6 HET GOL D2009 6 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 12(C3 H8 O3) FORMUL 9 NA 2(NA 1+) FORMUL 19 HOH *1569(H2 O) HELIX 1 1 ASP A 2 LEU A 9 1 8 HELIX 2 2 GLU A 14 ALA A 27 1 14 HELIX 3 3 SER A 31 GLY A 46 1 16 HELIX 4 4 ARG A 48 ALA A 63 1 16 HELIX 5 5 LEU A 89 GLY A 100 1 12 HELIX 6 6 GLY A 117 LEU A 125 1 9 HELIX 7 7 PRO A 132 GLY A 144 1 13 HELIX 8 8 ALA A 150 HIS A 154 1 5 HELIX 9 9 PRO A 155 HIS A 159 5 5 HELIX 10 10 VAL A 160 GLY A 168 1 9 HELIX 11 11 THR A 171 GLY A 177 1 7 HELIX 12 12 SER A 194 GLU A 196 5 3 HELIX 13 13 TRP A 197 LEU A 208 1 12 HELIX 14 14 THR A 241 GLY A 246 5 6 HELIX 15 15 PRO A 251 LYS A 256 5 6 HELIX 16 16 GLY A 259 LYS A 272 1 14 HELIX 17 17 GLY A 277 ALA A 294 1 18 HELIX 18 18 SER A 299 GLY A 314 1 16 HELIX 19 19 GLY A 314 ALA A 329 1 16 HELIX 20 20 ASP B 2 LEU B 9 1 8 HELIX 21 21 GLU B 14 ALA B 27 1 14 HELIX 22 22 SER B 31 GLY B 46 1 16 HELIX 23 23 ARG B 48 ALA B 63 1 16 HELIX 24 24 ASN B 88 GLY B 100 1 13 HELIX 25 25 GLY B 117 LEU B 125 1 9 HELIX 26 26 PRO B 132 GLY B 144 1 13 HELIX 27 27 ALA B 150 HIS B 154 1 5 HELIX 28 28 PRO B 155 HIS B 159 5 5 HELIX 29 29 VAL B 160 GLY B 168 1 9 HELIX 30 30 THR B 171 GLY B 177 1 7 HELIX 31 31 PRO B 178 THR B 180 5 3 HELIX 32 32 SER B 194 GLU B 196 5 3 HELIX 33 33 TRP B 197 LEU B 208 1 12 HELIX 34 34 PRO B 242 GLY B 246 5 5 HELIX 35 35 PRO B 251 LYS B 256 5 6 HELIX 36 36 GLY B 259 LYS B 272 1 14 HELIX 37 37 GLY B 277 ALA B 294 1 18 HELIX 38 38 SER B 299 GLY B 314 1 16 HELIX 39 39 GLY B 314 ALA B 329 1 16 HELIX 40 40 ASP C 2 LEU C 9 1 8 HELIX 41 41 GLU C 14 ALA C 27 1 14 HELIX 42 42 SER C 31 GLY C 46 1 16 HELIX 43 43 ARG C 48 ALA C 63 1 16 HELIX 44 44 LEU C 89 GLY C 100 1 12 HELIX 45 45 GLY C 117 LEU C 125 1 9 HELIX 46 46 PRO C 132 GLY C 144 1 13 HELIX 47 47 ALA C 150 HIS C 154 1 5 HELIX 48 48 ALA C 156 GLY C 168 1 13 HELIX 49 49 THR C 171 GLY C 177 1 7 HELIX 50 50 PRO C 178 ASN C 181 5 4 HELIX 51 51 SER C 194 GLU C 196 5 3 HELIX 52 52 TRP C 197 LEU C 208 1 12 HELIX 53 53 PRO C 242 GLY C 246 5 5 HELIX 54 54 PRO C 251 LYS C 256 5 6 HELIX 55 55 GLY C 259 LYS C 272 1 14 HELIX 56 56 GLY C 277 ALA C 294 1 18 HELIX 57 57 SER C 299 GLY C 314 1 16 HELIX 58 58 GLY C 314 ARG C 328 1 15 HELIX 59 59 MET D 1 LEU D 9 1 9 HELIX 60 60 GLU D 14 ALA D 27 1 14 HELIX 61 61 SER D 31 GLY D 46 1 16 HELIX 62 62 ARG D 48 ALA D 63 1 16 HELIX 63 63 LEU D 89 GLY D 100 1 12 HELIX 64 64 GLY D 117 LEU D 125 1 9 HELIX 65 65 PRO D 132 GLY D 144 1 13 HELIX 66 66 ALA D 150 HIS D 154 1 5 HELIX 67 67 PRO D 155 HIS D 159 5 5 HELIX 68 68 VAL D 160 GLY D 168 1 9 HELIX 69 69 THR D 171 GLY D 177 1 7 HELIX 70 70 SER D 194 GLU D 196 5 3 HELIX 71 71 TRP D 197 LEU D 208 1 12 HELIX 72 72 PRO D 242 GLY D 246 5 5 HELIX 73 73 PRO D 251 LYS D 256 5 6 HELIX 74 74 GLY D 259 LYS D 272 1 14 HELIX 75 75 GLY D 277 ALA D 294 1 18 HELIX 76 76 SER D 299 GLY D 314 1 16 HELIX 77 77 GLY D 314 LEU D 327 1 14 SHEET 1 A 7 PHE A 145 PHE A 149 0 SHEET 2 A 7 ALA A 103 GLY A 108 1 N LYS A 106 O LEU A 148 SHEET 3 A 7 LEU A 73 GLY A 78 1 N LEU A 74 O ALA A 103 SHEET 4 A 7 ALA A 187 GLY A 191 1 O GLY A 191 N VAL A 77 SHEET 5 A 7 ARG A 211 GLY A 217 1 O LEU A 213 N LEU A 190 SHEET 6 A 7 ASN A 228 GLU A 232 -1 O ARG A 229 N HIS A 216 SHEET 7 A 7 GLY A 236 LEU A 240 -1 O GLY A 236 N GLU A 232 SHEET 1 B 7 PHE B 145 PHE B 149 0 SHEET 2 B 7 ALA B 103 GLY B 108 1 N LYS B 106 O LEU B 148 SHEET 3 B 7 LEU B 73 GLY B 78 1 N LEU B 74 O ALA B 103 SHEET 4 B 7 ALA B 187 GLY B 191 1 O GLY B 191 N VAL B 77 SHEET 5 B 7 ARG B 211 GLY B 217 1 O LEU B 213 N LEU B 190 SHEET 6 B 7 ASN B 228 GLU B 232 -1 O ARG B 229 N HIS B 216 SHEET 7 B 7 GLY B 236 LEU B 240 -1 O TYR B 238 N VAL B 230 SHEET 1 C 7 PHE C 145 PHE C 149 0 SHEET 2 C 7 ALA C 103 GLY C 108 1 N LYS C 106 O LEU C 148 SHEET 3 C 7 LEU C 73 GLY C 78 1 N LEU C 74 O ALA C 103 SHEET 4 C 7 ALA C 187 GLY C 191 1 O GLY C 191 N VAL C 77 SHEET 5 C 7 ARG C 211 GLY C 217 1 O LEU C 213 N LEU C 190 SHEET 6 C 7 ASN C 228 GLU C 232 -1 O ARG C 229 N HIS C 216 SHEET 7 C 7 GLY C 236 LEU C 240 -1 O GLY C 236 N GLU C 232 SHEET 1 D 7 PHE D 145 PHE D 149 0 SHEET 2 D 7 ALA D 103 GLY D 108 1 N LYS D 106 O LEU D 148 SHEET 3 D 7 LEU D 73 GLY D 78 1 N LEU D 74 O ALA D 103 SHEET 4 D 7 ALA D 187 GLY D 191 1 O GLY D 191 N VAL D 77 SHEET 5 D 7 ARG D 211 GLY D 217 1 O LEU D 213 N LEU D 190 SHEET 6 D 7 ASN D 228 GLU D 232 -1 O ARG D 229 N HIS D 216 SHEET 7 D 7 GLY D 236 LEU D 240 -1 O TYR D 238 N VAL D 230 LINK O GLY B 273 NA NA B2100 1555 1555 2.56 LINK NA NA B2100 O HOH B2158 1555 1555 2.36 LINK NA NA B2100 O HOH B2219 1555 1555 2.54 LINK NA NA B2100 O HOH B2281 1555 1555 2.31 LINK NA NA B2100 O HOH B2344 1555 1555 2.28 LINK NA NA B2100 O HOH B2360 1555 1555 2.32 LINK NA NA D2101 O HOH D2124 1555 1555 2.34 LINK NA NA D2101 O HOH D2289 1555 1555 2.32 LINK NA NA D2101 O HOH D2394 1555 1555 2.46 LINK NA NA D2101 O HOH D2420 1555 1555 2.48 CISPEP 1 ARG A 71 PRO A 72 0 -0.43 CISPEP 2 ARG B 71 PRO B 72 0 0.36 CISPEP 3 ARG C 71 PRO C 72 0 -0.52 CISPEP 4 ARG D 71 PRO D 72 0 -1.07 CISPEP 5 ALA D 112 SER D 113 0 -12.57 CRYST1 165.319 72.913 141.263 90.00 125.21 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006049 0.000000 0.004269 0.00000 SCALE2 0.000000 0.013715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008664 0.00000