HEADER TRANSCRIPTION 27-MAR-07 2ELJ TITLE SOLUTION STRUCTURE OF THE SWIRM DOMAIN OF BAKER'S YEAST TITLE 2 TRANSCRIPTIONAL ADAPTER 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ADAPTER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SWIRM; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ADA2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060216-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS YDR448W, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,T.TOMIZAWA,S.WATANABE,T.HARADA, AUTHOR 2 T.UMEHARA,A.TANAKA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2ELJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ELJ 1 VERSN REVDAT 1 02-OCT-07 2ELJ 0 JRNL AUTH M.YONEYAMA,N.TOCHIO,S.KOSHIBA,T.TOMIZAWA,S.WATANABE, JRNL AUTH 2 T.HARADA,T.UMEHARA,A.TANAKA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SWIRM DOMAIN OF BAKER'S YEAST JRNL TITL 2 TRANSCRIPTIONAL ADAPTER 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (TOPSPIN), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ELJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026813. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3MM SAMPLE U-15N,13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE2 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 41.67 39.44 REMARK 500 1 ASN A 86 31.01 39.00 REMARK 500 2 GLN A 29 -38.83 -35.66 REMARK 500 2 LYS A 35 40.42 39.58 REMARK 500 2 ASP A 71 151.45 -38.51 REMARK 500 2 GLN A 85 35.50 -83.92 REMARK 500 2 ASN A 86 41.40 37.54 REMARK 500 3 SER A 3 42.19 35.38 REMARK 500 3 LYS A 35 50.48 36.40 REMARK 500 4 SER A 2 -58.88 -124.86 REMARK 500 4 LEU A 23 159.05 -44.98 REMARK 500 4 ASN A 69 36.95 -86.98 REMARK 500 4 ASN A 86 39.05 38.30 REMARK 500 5 SER A 2 90.51 -67.68 REMARK 500 5 ASN A 25 -39.32 -36.60 REMARK 500 5 ASN A 86 37.62 35.76 REMARK 500 6 SER A 6 137.70 -172.81 REMARK 500 6 ASN A 8 41.72 -95.91 REMARK 500 6 ASP A 71 148.22 -36.81 REMARK 500 6 ASN A 86 29.06 39.89 REMARK 500 7 ALA A 17 143.68 -38.12 REMARK 500 8 SER A 3 -60.00 -103.06 REMARK 500 8 HIS A 16 35.28 -96.54 REMARK 500 8 LEU A 23 151.30 -42.35 REMARK 500 8 CYS A 31 -36.07 -37.56 REMARK 500 8 LYS A 61 -37.57 -39.19 REMARK 500 8 ARG A 65 -33.23 -38.54 REMARK 500 8 ASN A 69 49.03 -92.93 REMARK 500 8 ASN A 86 41.23 36.66 REMARK 500 9 SER A 6 110.28 -160.77 REMARK 500 9 HIS A 16 33.78 -88.98 REMARK 500 9 LYS A 61 -39.72 -34.53 REMARK 500 9 ASN A 86 36.24 35.35 REMARK 500 10 SER A 2 107.19 -40.02 REMARK 500 10 LYS A 35 45.26 39.87 REMARK 500 10 ASN A 58 62.11 -113.54 REMARK 500 10 ASN A 86 29.85 42.54 REMARK 500 11 HIS A 16 50.23 -102.64 REMARK 500 11 LEU A 23 156.40 -40.99 REMARK 500 11 ASN A 58 50.35 -110.20 REMARK 500 12 LEU A 23 141.69 -38.90 REMARK 500 12 ASP A 71 158.44 -46.59 REMARK 500 12 ASN A 86 33.27 36.19 REMARK 500 13 ALA A 17 140.47 -39.48 REMARK 500 13 CYS A 31 -39.18 -37.50 REMARK 500 13 LYS A 61 -31.69 -35.36 REMARK 500 13 ASN A 69 46.32 -84.22 REMARK 500 13 GLN A 85 35.28 -84.27 REMARK 500 13 ASN A 86 37.20 34.39 REMARK 500 14 LEU A 23 153.97 -40.51 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MY_001000053.1 RELATED DB: TARGETDB DBREF 2ELJ A 8 88 UNP Q02336 ADA2_YEAST 354 434 SEQADV 2ELJ GLY A 1 UNP Q02336 EXPRESSION TAG SEQADV 2ELJ SER A 2 UNP Q02336 EXPRESSION TAG SEQADV 2ELJ SER A 3 UNP Q02336 EXPRESSION TAG SEQADV 2ELJ GLY A 4 UNP Q02336 EXPRESSION TAG SEQADV 2ELJ SER A 5 UNP Q02336 EXPRESSION TAG SEQADV 2ELJ SER A 6 UNP Q02336 EXPRESSION TAG SEQADV 2ELJ GLY A 7 UNP Q02336 EXPRESSION TAG SEQRES 1 A 88 GLY SER SER GLY SER SER GLY ASN MET THR ILE SER ASP SEQRES 2 A 88 ILE GLN HIS ALA PRO ASP TYR ALA LEU LEU SER ASN ASP SEQRES 3 A 88 GLU GLN GLN LEU CYS ILE GLN LEU LYS ILE LEU PRO LYS SEQRES 4 A 88 PRO TYR LEU VAL LEU LYS GLU VAL MET PHE ARG GLU LEU SEQRES 5 A 88 LEU LYS THR GLY GLY ASN LEU SER LYS SER ALA CYS ARG SEQRES 6 A 88 GLU LEU LEU ASN ILE ASP PRO ILE LYS ALA ASN ARG ILE SEQRES 7 A 88 TYR ASP PHE PHE GLN SER GLN ASN TRP MET HELIX 1 1 ILE A 11 HIS A 16 1 6 HELIX 2 2 SER A 24 LEU A 34 1 11 HELIX 3 3 LEU A 37 GLY A 56 1 20 HELIX 4 4 SER A 60 LEU A 68 1 9 HELIX 5 5 ASP A 71 GLN A 85 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1