HEADER ENDOCYTOSIS 28-MAR-07 2ENM TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN FROM MOUSE SORTING NEXIN-9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SNX9; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060130-11; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS SH3-LIKE BARREL, PROTEIN TRANSPORT, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, ENDOCYTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.WAKABAYASHI,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2ENM 1 REMARK REVDAT 3 09-MAR-22 2ENM 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ENM 1 VERSN REVDAT 1 02-OCT-07 2ENM 0 JRNL AUTH M.WAKABAYASHI,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN FROM MOUSE SORTING JRNL TITL 2 NEXIN-9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3.2, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ENM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026881. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM 13C, 15N-LAVELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; D-DTT; 0.02% NAN3; 10% D2O, REMARK 210 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : ECA; INOVA REMARK 210 SPECTROMETER MANUFACTURER : JEOL; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9815, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 70 99.60 -61.62 REMARK 500 1 LYS A 72 112.56 -34.81 REMARK 500 2 SER A 5 99.83 -66.04 REMARK 500 2 GLU A 21 150.50 -47.68 REMARK 500 3 MET A 8 107.75 -46.34 REMARK 500 3 ASP A 17 130.45 -39.07 REMARK 500 3 ASN A 25 49.96 -86.83 REMARK 500 3 PRO A 68 -178.87 -69.68 REMARK 500 4 ALA A 20 143.35 -39.82 REMARK 500 4 PRO A 22 90.77 -69.82 REMARK 500 4 LYS A 53 34.48 -89.61 REMARK 500 5 ASN A 25 30.44 -87.87 REMARK 500 5 ASN A 69 150.21 -38.42 REMARK 500 6 SER A 5 154.93 -44.60 REMARK 500 6 ALA A 20 125.30 -34.41 REMARK 500 6 GLU A 21 151.58 -40.69 REMARK 500 6 PRO A 74 97.32 -69.78 REMARK 500 6 SER A 76 111.99 -166.98 REMARK 500 7 PRO A 74 -175.02 -69.68 REMARK 500 8 ALA A 19 83.86 -64.15 REMARK 500 8 ASN A 25 34.00 -84.55 REMARK 500 9 SER A 6 96.17 -61.01 REMARK 500 9 ASN A 41 64.60 -111.29 REMARK 500 11 SER A 3 106.08 -45.44 REMARK 500 11 PRO A 22 89.55 -69.78 REMARK 500 11 ASN A 25 44.98 -93.79 REMARK 500 11 PRO A 74 94.55 -69.77 REMARK 500 12 ALA A 19 84.54 -68.23 REMARK 500 12 ALA A 20 116.63 -38.93 REMARK 500 12 ASN A 41 69.36 -114.16 REMARK 500 12 ASN A 69 81.03 -60.79 REMARK 500 13 MET A 8 34.55 -84.89 REMARK 500 13 ALA A 19 84.35 -67.15 REMARK 500 13 ALA A 20 135.66 -39.38 REMARK 500 13 ASN A 25 80.65 -65.99 REMARK 500 13 ASN A 41 72.06 -119.70 REMARK 500 13 PRO A 68 -168.54 -69.72 REMARK 500 13 PHE A 75 120.05 -171.03 REMARK 500 14 PRO A 22 89.95 -69.78 REMARK 500 14 ASN A 24 37.74 -94.13 REMARK 500 14 ASN A 25 36.32 37.23 REMARK 500 15 SER A 5 42.51 -89.71 REMARK 500 15 PRO A 68 -175.86 -69.76 REMARK 500 16 ASP A 17 135.34 -37.54 REMARK 500 16 ASN A 25 39.94 -91.24 REMARK 500 16 SER A 76 -72.39 -50.77 REMARK 500 17 SER A 3 -61.64 -99.33 REMARK 500 17 PRO A 22 90.91 -69.78 REMARK 500 17 ASN A 25 69.95 -69.16 REMARK 500 17 PRO A 68 -175.37 -69.73 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMI002018106.1 RELATED DB: TARGETDB DBREF 2ENM A 8 77 UNP Q91VH2 SNX9_MOUSE 1 70 SEQADV 2ENM GLY A 1 UNP Q91VH2 EXPRESSION TAG SEQADV 2ENM SER A 2 UNP Q91VH2 EXPRESSION TAG SEQADV 2ENM SER A 3 UNP Q91VH2 EXPRESSION TAG SEQADV 2ENM GLY A 4 UNP Q91VH2 EXPRESSION TAG SEQADV 2ENM SER A 5 UNP Q91VH2 EXPRESSION TAG SEQADV 2ENM SER A 6 UNP Q91VH2 EXPRESSION TAG SEQADV 2ENM GLY A 7 UNP Q91VH2 EXPRESSION TAG SEQRES 1 A 77 GLY SER SER GLY SER SER GLY MET ALA THR LYS ALA ARG SEQRES 2 A 77 VAL MET TYR ASP PHE ALA ALA GLU PRO GLY ASN ASN GLU SEQRES 3 A 77 LEU THR VAL THR GLU GLY GLU ILE ILE THR VAL THR ASN SEQRES 4 A 77 PRO ASN VAL GLY GLY GLY TRP LEU GLU GLY LYS ASN ASN SEQRES 5 A 77 LYS GLY GLU GLN GLY LEU VAL PRO THR ASP TYR VAL GLU SEQRES 6 A 77 ILE LEU PRO ASN ASP GLY LYS ASP PRO PHE SER CYS SHEET 1 A 5 GLN A 56 PRO A 60 0 SHEET 2 A 5 TRP A 46 LYS A 50 -1 N LEU A 47 O VAL A 59 SHEET 3 A 5 ILE A 34 ASN A 39 -1 N THR A 38 O GLU A 48 SHEET 4 A 5 THR A 10 VAL A 14 -1 N THR A 10 O VAL A 37 SHEET 5 A 5 VAL A 64 LEU A 67 -1 O LEU A 67 N LYS A 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1