HEADER SIGNALING PROTEIN 29-MAR-07 2EO6 TITLE SOLUTION STRUCTURE OF THE SH2 DOMAIN FROM MOUSE B-CELL LINKER PROTEIN TITLE 2 BLNK COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LINKER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN, UNP RESIDUES 330-457; COMPND 5 SYNONYM: CYTOPLASMIC ADAPTER PROTEIN, B-CELL ADAPTER CONTAINING SH2 COMPND 6 DOMAIN PROTEIN, B-CELL ADAPTER CONTAINING SRC HOMOLOGY 2 DOMAIN COMPND 7 PROTEIN, SRC HOMOLOGY 2 DOMAIN-CONTAINING LEUKOCYTE PROTEIN OF 65 COMPND 8 KDA, SLP-65, LYMPHOCYTE ANTIGEN 57; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: BLNK; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050815-08; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS SH2, CYTOPLASMIC ADAPTER PROTEIN, B-CELL ADAPTER CONTAINING SH2 KEYWDS 2 DOMAIN PROTEIN, B-CELL ADAPTER CONTAINING SRC HOMOLOGY 2 DOMAIN KEYWDS 3 PROTEIN, SRC HOMOLOGY 2 DOMAIN-CONTAINING LEUKOCYTE PROTEIN OF 65 KEYWDS 4 KDA, SLP-65, LYMPHOCYTE ANTIGEN 57, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 5 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 6 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 7 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.SANO,F.HAYASHI,C.KUROSAKI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EO6 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EO6 1 VERSN REVDAT 1 01-APR-08 2EO6 0 JRNL AUTH R.SANO,F.HAYASHI,C.KUROSAKI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH2 DOMAIN FROM MOUSE B-CELL JRNL TITL 2 LINKER PROTEIN BLNK JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EO6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026900. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23 MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL (PH7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 147.87 -39.83 REMARK 500 1 PRO A 8 2.83 -69.79 REMARK 500 1 LEU A 20 -31.70 -130.15 REMARK 500 1 TYR A 26 98.08 -67.26 REMARK 500 1 ALA A 29 43.20 -84.86 REMARK 500 1 ASP A 45 108.37 -42.57 REMARK 500 1 LEU A 49 126.86 -172.19 REMARK 500 1 HIS A 56 41.59 73.18 REMARK 500 1 SER A 58 -61.38 -127.62 REMARK 500 1 ASN A 69 91.42 -41.92 REMARK 500 1 LYS A 90 175.86 -53.62 REMARK 500 1 ASN A 93 47.79 -83.37 REMARK 500 1 ASN A 121 85.69 -60.90 REMARK 500 2 TYR A 26 97.55 -62.03 REMARK 500 2 ALA A 29 42.64 -86.17 REMARK 500 2 ASN A 69 91.19 -44.40 REMARK 500 2 ALA A 82 -39.96 -37.24 REMARK 500 2 ASN A 93 99.50 -35.07 REMARK 500 2 PHE A 98 -75.14 -108.85 REMARK 500 2 GLN A 119 47.22 -84.53 REMARK 500 3 PRO A 8 1.87 -69.72 REMARK 500 3 SER A 11 42.28 -93.35 REMARK 500 3 TYR A 26 93.23 -69.45 REMARK 500 3 ALA A 29 42.89 -88.38 REMARK 500 3 CYS A 30 -177.97 -67.90 REMARK 500 3 ASP A 45 126.05 -35.74 REMARK 500 3 SER A 53 151.23 -35.89 REMARK 500 3 SER A 54 44.02 -81.43 REMARK 500 3 ASN A 69 89.45 -46.51 REMARK 500 3 ASN A 93 97.05 -40.94 REMARK 500 3 THR A 122 101.96 -48.01 REMARK 500 3 ASP A 124 104.31 -33.95 REMARK 500 3 LEU A 128 104.13 -53.42 REMARK 500 3 SER A 140 141.64 -38.42 REMARK 500 4 ASN A 10 161.14 -41.78 REMARK 500 4 SER A 11 158.55 -43.60 REMARK 500 4 THR A 12 -60.19 -123.17 REMARK 500 4 TYR A 26 97.28 -61.04 REMARK 500 4 ALA A 29 37.29 -96.85 REMARK 500 4 SER A 34 -38.50 -38.46 REMARK 500 4 ASP A 45 132.08 -35.49 REMARK 500 4 SER A 53 165.56 -45.00 REMARK 500 4 ASN A 69 91.79 -47.02 REMARK 500 4 LYS A 92 -75.51 -51.21 REMARK 500 4 ASN A 93 38.85 37.89 REMARK 500 4 SER A 118 49.80 35.30 REMARK 500 4 ASN A 120 28.07 47.66 REMARK 500 5 SER A 5 156.81 -41.61 REMARK 500 5 TYR A 26 95.77 -67.45 REMARK 500 5 ALA A 29 47.07 -90.13 REMARK 500 REMARK 500 THIS ENTRY HAS 263 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR_001000487.1 RELATED DB: TARGETDB DBREF 2EO6 A 8 135 UNP Q9QUN3 BLNK_MOUSE 330 457 SEQADV 2EO6 GLY A 1 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 SER A 2 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 SER A 3 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 GLY A 4 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 SER A 5 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 SER A 6 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 GLY A 7 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 SER A 136 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 GLY A 137 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 PRO A 138 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 SER A 139 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 SER A 140 UNP Q9QUN3 EXPRESSION TAG SEQADV 2EO6 GLY A 141 UNP Q9QUN3 EXPRESSION TAG SEQRES 1 A 141 GLY SER SER GLY SER SER GLY PRO PHE ASN SER THR PHE SEQRES 2 A 141 ALA ASP GLN GLU ALA GLU LEU LEU GLY LYS PRO TRP TYR SEQRES 3 A 141 ALA GLY ALA CYS ASP ARG LYS SER ALA GLU GLU ALA LEU SEQRES 4 A 141 HIS ARG SER ASN LYS ASP GLY SER PHE LEU ILE ARG LYS SEQRES 5 A 141 SER SER GLY HIS ASP SER LYS GLN PRO TYR THR LEU VAL SEQRES 6 A 141 ALA PHE PHE ASN LYS ARG VAL TYR ASN ILE PRO VAL ARG SEQRES 7 A 141 PHE ILE GLU ALA THR LYS GLN TYR ALA LEU GLY LYS LYS SEQRES 8 A 141 LYS ASN GLY GLU GLU TYR PHE GLY SER VAL VAL GLU ILE SEQRES 9 A 141 VAL ASN SER HIS GLN HIS ASN PRO LEU VAL LEU ILE ASP SEQRES 10 A 141 SER GLN ASN ASN THR LYS ASP SER THR ARG LEU LYS TYR SEQRES 11 A 141 ALA VAL LYS VAL SER SER GLY PRO SER SER GLY HELIX 1 1 SER A 11 GLU A 19 1 9 HELIX 2 2 ASP A 31 ASN A 43 1 13 HELIX 3 3 SER A 100 ASN A 111 1 12 SHEET 1 A 4 TYR A 26 GLY A 28 0 SHEET 2 A 4 ILE A 50 LYS A 52 1 O ILE A 50 N ALA A 27 SHEET 3 A 4 TYR A 62 PHE A 68 -1 O THR A 63 N ARG A 51 SHEET 4 A 4 ARG A 71 VAL A 77 -1 O ARG A 71 N PHE A 68 SHEET 1 B 2 PHE A 79 ILE A 80 0 SHEET 2 B 2 GLN A 85 TYR A 86 -1 N GLN A 85 O ILE A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1