HEADER HYDROLASE 29-MAR-07 2EOB TITLE SOLUTION STRUCTURE OF THE SECOND SH2 DOMAIN FROM RAT PLC GAMMA-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE COMPND 3 GAMMA 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SH2 DOMAIN; COMPND 6 SYNONYM: PHOSPHOINOSITIDE PHOSPHOLIPASE C, PLC-GAMMA-2, PHOSPHOLIPASE COMPND 7 C-GAMMA-2, PLC-IV; COMPND 8 EC: 3.1.4.11; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PLCG2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051205-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH2, PHOSPHOINOSITIDE PHOSPHOLIPASE C, PLC-GAMMA-2, PHOSPHOLIPASE C- KEYWDS 2 GAMMA-2, PLC-IV, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.SANO,F.HAYASHI,T.NAGASHIMA,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2EOB 1 REMARK REVDAT 3 09-MAR-22 2EOB 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EOB 1 VERSN REVDAT 1 01-APR-08 2EOB 0 JRNL AUTH R.SANO,F.HAYASHI,T.NAGASHIMA,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND SH2 DOMAIN FROM RAT PLC JRNL TITL 2 GAMMA-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EOB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026905. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.71MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 10 151.84 -38.52 REMARK 500 1 PRO A 39 2.94 -69.82 REMARK 500 1 ASP A 41 76.17 -104.24 REMARK 500 1 GLU A 50 156.38 -49.15 REMARK 500 1 ASP A 53 42.79 -84.86 REMARK 500 1 LYS A 64 177.76 -54.36 REMARK 500 1 ARG A 75 29.54 41.56 REMARK 500 1 LEU A 79 -74.90 -55.68 REMARK 500 1 SER A 82 72.16 -67.33 REMARK 500 1 TYR A 101 -70.54 -107.35 REMARK 500 1 ARG A 102 -64.41 -129.04 REMARK 500 1 LEU A 106 102.84 -38.64 REMARK 500 1 PRO A 109 99.39 -69.73 REMARK 500 1 VAL A 110 124.89 -39.36 REMARK 500 2 ASN A 14 78.22 -111.19 REMARK 500 2 LYS A 19 143.83 -36.10 REMARK 500 2 PRO A 39 2.39 -69.77 REMARK 500 2 ASP A 41 47.37 -79.02 REMARK 500 2 THR A 52 148.05 -174.18 REMARK 500 2 ALA A 61 -175.35 -64.53 REMARK 500 2 ASP A 73 77.96 -114.08 REMARK 500 2 ALA A 99 153.83 -40.73 REMARK 500 2 TYR A 101 -69.77 -103.36 REMARK 500 2 LYS A 103 27.95 37.91 REMARK 500 2 LEU A 106 93.29 -44.06 REMARK 500 2 PRO A 109 91.22 -69.81 REMARK 500 2 VAL A 110 135.94 -34.32 REMARK 500 2 SER A 122 166.24 -43.65 REMARK 500 2 SER A 123 108.31 -161.31 REMARK 500 3 ASN A 14 70.11 -116.33 REMARK 500 3 LYS A 19 144.45 -38.57 REMARK 500 3 ARG A 28 -35.42 -38.41 REMARK 500 3 ARG A 62 43.41 35.83 REMARK 500 3 LEU A 79 -69.07 -101.42 REMARK 500 3 TYR A 101 -70.37 -100.73 REMARK 500 3 ARG A 102 -74.67 -130.72 REMARK 500 3 ARG A 105 -177.83 -173.82 REMARK 500 3 ARG A 107 -35.65 -130.55 REMARK 500 3 SER A 119 45.81 -91.40 REMARK 500 3 PRO A 121 0.87 -69.74 REMARK 500 3 SER A 122 106.54 -49.04 REMARK 500 4 PRO A 13 1.93 -69.71 REMARK 500 4 LYS A 19 141.23 -37.88 REMARK 500 4 PRO A 39 1.01 -69.81 REMARK 500 4 GLU A 50 -34.22 -36.72 REMARK 500 4 ALA A 61 -174.02 -58.52 REMARK 500 4 ARG A 62 -25.57 -38.87 REMARK 500 4 SER A 119 44.87 -108.40 REMARK 500 5 PRO A 13 2.95 -69.81 REMARK 500 5 PRO A 39 1.66 -69.76 REMARK 500 REMARK 500 THIS ENTRY HAS 254 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR_001000555.1 RELATED DB: TARGETDB DBREF 2EOB A 8 118 UNP P24135 PLCG2_RAT 633 743 SEQADV 2EOB GLY A 1 UNP P24135 EXPRESSION TAG SEQADV 2EOB SER A 2 UNP P24135 EXPRESSION TAG SEQADV 2EOB SER A 3 UNP P24135 EXPRESSION TAG SEQADV 2EOB GLY A 4 UNP P24135 EXPRESSION TAG SEQADV 2EOB SER A 5 UNP P24135 EXPRESSION TAG SEQADV 2EOB SER A 6 UNP P24135 EXPRESSION TAG SEQADV 2EOB GLY A 7 UNP P24135 EXPRESSION TAG SEQADV 2EOB SER A 119 UNP P24135 EXPRESSION TAG SEQADV 2EOB GLY A 120 UNP P24135 EXPRESSION TAG SEQADV 2EOB PRO A 121 UNP P24135 EXPRESSION TAG SEQADV 2EOB SER A 122 UNP P24135 EXPRESSION TAG SEQADV 2EOB SER A 123 UNP P24135 EXPRESSION TAG SEQADV 2EOB GLY A 124 UNP P24135 EXPRESSION TAG SEQRES 1 A 124 GLY SER SER GLY SER SER GLY ASP PRO VAL PRO ASN PRO SEQRES 2 A 124 ASN PRO HIS GLU SER LYS PRO TRP TYR TYR ASP ARG LEU SEQRES 3 A 124 SER ARG GLY GLU ALA GLU ASP MET LEU MET ARG ILE PRO SEQRES 4 A 124 ARG ASP GLY ALA PHE LEU ILE ARG LYS ARG GLU GLY THR SEQRES 5 A 124 ASP SER TYR ALA ILE THR PHE ARG ALA ARG GLY LYS VAL SEQRES 6 A 124 LYS HIS CYS ARG ILE ASN ARG ASP GLY ARG HIS PHE VAL SEQRES 7 A 124 LEU GLY THR SER ALA TYR PHE GLU SER LEU VAL GLU LEU SEQRES 8 A 124 VAL SER TYR TYR GLU LYS HIS ALA LEU TYR ARG LYS MET SEQRES 9 A 124 ARG LEU ARG TYR PRO VAL THR PRO GLU LEU LEU GLU ARG SEQRES 10 A 124 TYR SER GLY PRO SER SER GLY HELIX 1 1 SER A 27 ILE A 38 1 12 HELIX 2 2 SER A 87 GLU A 96 1 10 HELIX 3 3 THR A 111 TYR A 118 1 8 SHEET 1 A 5 TYR A 22 TYR A 23 0 SHEET 2 A 5 ALA A 43 ARG A 47 1 O ILE A 46 N TYR A 23 SHEET 3 A 5 TYR A 55 ALA A 61 -1 O THR A 58 N LEU A 45 SHEET 4 A 5 LYS A 64 ARG A 72 -1 O ILE A 70 N TYR A 55 SHEET 5 A 5 PHE A 77 VAL A 78 -1 O VAL A 78 N ASN A 71 SHEET 1 B 3 TYR A 22 TYR A 23 0 SHEET 2 B 3 ALA A 43 ARG A 47 1 O ILE A 46 N TYR A 23 SHEET 3 B 3 TYR A 108 PRO A 109 1 O TYR A 108 N PHE A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1