HEADER TRANSCRIPTION 29-MAR-07 2EPB TITLE SOLUTION STRUCTURE OF CHROMO DOMAIN 2 IN CHROMODOMAIN-HELICASE-DNA- TITLE 2 BINDING PROTEIN 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CHROMO DOMAIN, UNP RESIDUES 371-431; COMPND 5 SYNONYM: ATP- DEPENDENT HELICASE CHD6, CHD-6, RADIATION-INDUCED GENE COMPND 6 B PROTEIN; COMPND 7 EC: 3.6.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHD6; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060904-12; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CHROMO DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EPB 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EPB 1 VERSN REVDAT 1 02-OCT-07 2EPB 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF CHROMO DOMAIN 2 IN JRNL TITL 2 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EPB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026940. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9825, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 369 146.84 -36.47 REMARK 500 1 VAL A 375 30.05 -89.98 REMARK 500 1 ARG A 379 -177.75 -170.01 REMARK 500 1 ALA A 389 45.39 -102.12 REMARK 500 1 GLU A 390 -51.34 -129.05 REMARK 500 1 SER A 404 -38.02 -34.21 REMARK 500 1 GLU A 408 -29.97 -37.67 REMARK 500 1 GLU A 409 37.53 -93.82 REMARK 500 2 PRO A 372 84.89 -69.80 REMARK 500 2 ASP A 373 113.40 -170.81 REMARK 500 2 LEU A 381 -73.86 -88.19 REMARK 500 2 LEU A 399 95.06 -69.94 REMARK 500 2 SER A 404 -33.25 -34.38 REMARK 500 2 GLU A 408 -33.62 -38.51 REMARK 500 2 GLU A 409 34.11 -87.91 REMARK 500 3 SER A 368 79.56 -109.14 REMARK 500 3 GLU A 376 111.34 -166.01 REMARK 500 3 LEU A 381 -75.04 -71.05 REMARK 500 3 ASP A 388 176.06 -52.40 REMARK 500 3 GLU A 390 -74.33 -66.63 REMARK 500 3 SER A 404 -39.47 -33.49 REMARK 500 3 GLU A 408 -38.73 -38.93 REMARK 500 3 GLU A 409 33.07 -84.33 REMARK 500 3 SER A 410 99.85 -63.48 REMARK 500 3 GLN A 430 106.88 -59.75 REMARK 500 4 SER A 368 177.29 -59.13 REMARK 500 4 TYR A 374 43.40 -89.49 REMARK 500 4 ARG A 379 -177.83 -173.58 REMARK 500 4 THR A 391 -70.84 -116.30 REMARK 500 4 GLU A 394 95.75 -68.91 REMARK 500 4 LEU A 399 91.91 -69.63 REMARK 500 4 SER A 404 -31.66 -35.24 REMARK 500 4 GLU A 408 -28.41 -38.25 REMARK 500 4 GLU A 409 33.89 -91.15 REMARK 500 4 SER A 410 99.35 -56.59 REMARK 500 4 ASP A 417 38.14 -90.40 REMARK 500 5 PRO A 372 85.94 -69.79 REMARK 500 5 ARG A 379 -178.66 -174.12 REMARK 500 5 THR A 391 -73.75 -103.17 REMARK 500 5 GLU A 394 109.69 -53.86 REMARK 500 5 LEU A 399 98.35 -68.23 REMARK 500 5 SER A 404 -39.88 -33.98 REMARK 500 5 GLU A 408 -32.98 -36.42 REMARK 500 5 GLU A 409 36.57 -87.50 REMARK 500 5 LEU A 414 163.18 -47.08 REMARK 500 6 SER A 369 45.76 -82.93 REMARK 500 6 LEU A 381 -71.80 -61.24 REMARK 500 6 GLU A 394 93.76 -67.90 REMARK 500 6 GLU A 409 39.27 -88.14 REMARK 500 6 ASP A 419 153.30 -48.12 REMARK 500 REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003011007.1 RELATED DB: TARGETDB DBREF 2EPB A 371 431 UNP Q8TD26 CHD6_HUMAN 371 431 SEQADV 2EPB GLY A 364 UNP Q8TD26 EXPRESSION TAG SEQADV 2EPB SER A 365 UNP Q8TD26 EXPRESSION TAG SEQADV 2EPB SER A 366 UNP Q8TD26 EXPRESSION TAG SEQADV 2EPB GLY A 367 UNP Q8TD26 EXPRESSION TAG SEQADV 2EPB SER A 368 UNP Q8TD26 EXPRESSION TAG SEQADV 2EPB SER A 369 UNP Q8TD26 EXPRESSION TAG SEQADV 2EPB GLY A 370 UNP Q8TD26 EXPRESSION TAG SEQRES 1 A 68 GLY SER SER GLY SER SER GLY ASN PRO ASP TYR VAL GLU SEQRES 2 A 68 VAL ASP ARG ILE LEU GLU VAL ALA HIS THR LYS ASP ALA SEQRES 3 A 68 GLU THR GLY GLU GLU VAL THR HIS TYR LEU VAL LYS TRP SEQRES 4 A 68 CYS SER LEU PRO TYR GLU GLU SER THR TRP GLU LEU GLU SEQRES 5 A 68 GLU ASP VAL ASP PRO ALA LYS VAL LYS GLU PHE GLU SER SEQRES 6 A 68 LEU GLN VAL HELIX 1 1 PRO A 406 SER A 410 5 5 HELIX 2 2 ASP A 419 GLN A 430 1 12 SHEET 1 A 3 ARG A 379 LYS A 387 0 SHEET 2 A 3 GLU A 394 LYS A 401 -1 O LYS A 401 N ARG A 379 SHEET 3 A 3 TRP A 412 LEU A 414 -1 O GLU A 413 N TYR A 398 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1