HEADER TRANSCRIPTION 30-MAR-07 2EPX TITLE SOLUTION STRUCTURE OF THE THIRD C2H2 TYPE ZINC FINGER DOMAIN OF ZINC TITLE 2 FINGER PROTEIN 28 HOMOLOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 28 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN, UNP RESIDUES 471-504; COMPND 5 SYNONYM: ZFP-28, KRUEPPEL-LIKE ZINC FINGER FACTOR X6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZFP28, KIAA1431; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061225-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS C2H2, ZINC FINGER DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2EPX 1 REMARK REVDAT 3 09-MAR-22 2EPX 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2EPX 1 VERSN REVDAT 1 02-OCT-07 2EPX 0 JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD C2H2 TYPE ZINC FINGER DOMAIN JRNL TITL 2 OF ZINC FINGER PROTEIN 28 HOMOLOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EPX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026962. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.83MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 0.05MM REMARK 210 ZNCL2+1MM IDA; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 465 145.74 -174.40 REMARK 500 1 THR A 471 142.76 -171.70 REMARK 500 1 HIS A 499 -72.36 -61.46 REMARK 500 1 LYS A 503 73.31 52.55 REMARK 500 2 TYR A 497 -65.68 -122.27 REMARK 500 2 HIS A 499 -70.85 -60.11 REMARK 500 3 SER A 465 117.80 -161.19 REMARK 500 3 CYS A 481 -41.06 -136.76 REMARK 500 3 TYR A 497 -63.36 -122.74 REMARK 500 3 PRO A 504 80.42 -69.73 REMARK 500 4 SER A 466 -51.36 -133.20 REMARK 500 4 CYS A 481 -41.18 -139.04 REMARK 500 4 TYR A 497 -62.44 -123.04 REMARK 500 4 LYS A 503 160.64 63.05 REMARK 500 5 LYS A 473 56.88 -103.10 REMARK 500 5 CYS A 481 -39.92 -131.16 REMARK 500 5 TYR A 497 -60.46 -123.33 REMARK 500 5 PRO A 504 -174.42 -69.73 REMARK 500 6 SER A 465 -60.98 -91.17 REMARK 500 6 TYR A 497 -56.04 -128.73 REMARK 500 6 HIS A 499 -62.24 -90.14 REMARK 500 6 GLU A 502 98.83 -58.23 REMARK 500 7 CYS A 481 -40.42 -133.49 REMARK 500 7 TYR A 497 -66.37 -122.87 REMARK 500 7 HIS A 499 -72.49 -56.54 REMARK 500 7 PRO A 504 89.52 -69.80 REMARK 500 8 THR A 471 74.47 -116.88 REMARK 500 8 TYR A 497 -62.90 -128.38 REMARK 500 8 LYS A 503 73.69 55.21 REMARK 500 8 PRO A 507 93.96 -69.82 REMARK 500 9 TYR A 497 -57.37 -127.22 REMARK 500 10 SER A 469 53.76 -92.88 REMARK 500 10 TYR A 497 -58.69 -126.57 REMARK 500 11 SER A 465 129.56 -171.40 REMARK 500 11 CYS A 481 -40.13 -132.32 REMARK 500 11 TYR A 497 -62.42 -124.18 REMARK 500 11 PRO A 504 97.67 -69.76 REMARK 500 12 CYS A 481 -40.48 -134.41 REMARK 500 12 TYR A 497 -51.96 -125.99 REMARK 500 12 HIS A 499 -74.73 -51.62 REMARK 500 12 PRO A 507 90.12 -69.76 REMARK 500 13 CYS A 481 -40.90 -136.71 REMARK 500 13 TYR A 497 -61.79 -121.94 REMARK 500 13 HIS A 499 -74.04 -59.29 REMARK 500 14 CYS A 481 -39.67 -131.47 REMARK 500 15 CYS A 481 -41.28 -140.15 REMARK 500 15 HIS A 499 -73.18 -57.20 REMARK 500 15 PRO A 504 94.92 -69.76 REMARK 500 16 THR A 471 139.35 -172.75 REMARK 500 16 CYS A 481 -40.10 -132.69 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 478 SG REMARK 620 2 CYS A 481 SG 114.3 REMARK 620 3 HIS A 494 NE2 111.8 101.2 REMARK 620 4 HIS A 499 NE2 109.6 123.8 93.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003011815.5 RELATED DB: TARGETDB DBREF 2EPX A 471 504 UNP Q8NHY6 ZFP28_HUMAN 471 504 SEQADV 2EPX GLY A 464 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX SER A 465 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX SER A 466 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX GLY A 467 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX SER A 468 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX SER A 469 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX GLY A 470 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX SER A 505 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX GLY A 506 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX PRO A 507 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX SER A 508 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX SER A 509 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPX GLY A 510 UNP Q8NHY6 EXPRESSION TAG SEQRES 1 A 47 GLY SER SER GLY SER SER GLY THR GLY LYS LYS PRO TYR SEQRES 2 A 47 GLU CYS ILE GLU CYS GLY LYS ALA PHE ILE GLN ASN THR SEQRES 3 A 47 SER LEU ILE ARG HIS TRP ARG TYR TYR HIS THR GLY GLU SEQRES 4 A 47 LYS PRO SER GLY PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLN A 487 ARG A 496 1 10 LINK ZN ZN A 201 SG CYS A 478 1555 1555 2.40 LINK ZN ZN A 201 SG CYS A 481 1555 1555 2.19 LINK ZN ZN A 201 NE2 HIS A 494 1555 1555 2.10 LINK ZN ZN A 201 NE2 HIS A 499 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1