HEADER DNA BINDING PROTEIN 30-MAR-07 2EQY TITLE SOLUTION STRUCTURE OF THE ARID DOMAIN OF JARID1B PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: JUMONJI, AT RICH INTERACTIVE DOMAIN 1B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARID DOMAIN; COMPND 5 SYNONYM: RBP2 LIKE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: JARID1B; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060821-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ARID DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EQY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EQY 1 VERSN REVDAT 1 02-OCT-07 2EQY 0 JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ARID DOMAIN OF JARID1B PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EQY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026998. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.77MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 92 144.75 -171.35 REMARK 500 1 GLN A 96 -58.32 -128.96 REMARK 500 1 LEU A 133 -71.92 -34.09 REMARK 500 1 ARG A 150 51.48 35.36 REMARK 500 1 LYS A 151 41.91 -86.47 REMARK 500 1 ILE A 155 -70.90 -55.23 REMARK 500 1 PRO A 163 85.64 -69.75 REMARK 500 1 LYS A 165 -46.26 -131.44 REMARK 500 1 ASP A 189 101.68 -59.15 REMARK 500 1 ARG A 192 101.40 -45.20 REMARK 500 1 PRO A 197 -179.69 -69.74 REMARK 500 1 LEU A 199 142.25 -34.39 REMARK 500 2 SER A 88 160.03 -48.33 REMARK 500 2 SER A 92 -51.42 -134.14 REMARK 500 2 ARG A 150 39.12 38.38 REMARK 500 2 LYS A 151 46.60 -85.46 REMARK 500 2 PRO A 163 96.19 -69.73 REMARK 500 2 ARG A 192 92.53 -61.28 REMARK 500 2 LYS A 206 141.39 -36.34 REMARK 500 3 GLU A 94 34.50 -96.17 REMARK 500 3 LEU A 104 -27.88 -38.23 REMARK 500 3 LEU A 133 -70.16 -36.45 REMARK 500 3 ARG A 150 52.12 39.64 REMARK 500 3 LYS A 151 42.13 -94.22 REMARK 500 3 PRO A 163 88.32 -69.80 REMARK 500 4 THR A 97 -36.01 -34.16 REMARK 500 4 LEU A 133 -71.76 -50.08 REMARK 500 4 ARG A 150 47.87 31.41 REMARK 500 4 LYS A 151 37.95 -87.97 REMARK 500 4 PRO A 163 93.32 -69.75 REMARK 500 5 SER A 88 145.14 -170.34 REMARK 500 5 SER A 92 120.46 -37.06 REMARK 500 5 LEU A 104 -30.61 -36.68 REMARK 500 5 LEU A 133 -70.83 -46.94 REMARK 500 5 ILE A 178 -50.35 -120.13 REMARK 500 5 GLU A 207 96.45 -66.37 REMARK 500 6 SER A 88 41.60 37.85 REMARK 500 6 LYS A 126 133.19 -170.25 REMARK 500 6 LEU A 133 -70.69 -40.79 REMARK 500 6 LYS A 151 43.11 -83.53 REMARK 500 7 GLN A 96 46.14 -81.13 REMARK 500 7 GLU A 124 42.00 37.79 REMARK 500 7 LEU A 128 94.83 -67.31 REMARK 500 7 LEU A 133 -72.13 -37.93 REMARK 500 7 ARG A 150 37.91 34.38 REMARK 500 7 LYS A 151 44.03 -79.74 REMARK 500 7 PRO A 163 86.70 -69.79 REMARK 500 7 ASP A 189 46.18 -88.97 REMARK 500 7 ARG A 192 113.20 -36.91 REMARK 500 7 LEU A 194 98.79 -52.68 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007003997.1 RELATED DB: TARGETDB DBREF 2EQY A 94 208 UNP Q80Y84 Q80Y84_MOUSE 94 208 SEQADV 2EQY GLY A 87 UNP Q80Y84 EXPRESSION TAG SEQADV 2EQY SER A 88 UNP Q80Y84 EXPRESSION TAG SEQADV 2EQY SER A 89 UNP Q80Y84 EXPRESSION TAG SEQADV 2EQY GLY A 90 UNP Q80Y84 EXPRESSION TAG SEQADV 2EQY SER A 91 UNP Q80Y84 EXPRESSION TAG SEQADV 2EQY SER A 92 UNP Q80Y84 EXPRESSION TAG SEQADV 2EQY GLY A 93 UNP Q80Y84 EXPRESSION TAG SEQRES 1 A 122 GLY SER SER GLY SER SER GLY GLU ALA GLN THR ARG VAL SEQRES 2 A 122 LYS LEU ASN PHE LEU ASP GLN ILE ALA LYS TYR TRP GLU SEQRES 3 A 122 LEU GLN GLY SER THR LEU LYS ILE PRO HIS VAL GLU ARG SEQRES 4 A 122 LYS ILE LEU ASP LEU PHE GLN LEU ASN LYS LEU VAL ALA SEQRES 5 A 122 GLU GLU GLY GLY PHE ALA VAL VAL CYS LYS ASP ARG LYS SEQRES 6 A 122 TRP THR LYS ILE ALA THR LYS MET GLY PHE ALA PRO GLY SEQRES 7 A 122 LYS ALA VAL GLY SER HIS ILE ARG GLY HIS TYR GLU ARG SEQRES 8 A 122 ILE LEU ASN PRO TYR ASN LEU PHE LEU SER GLY ASP SER SEQRES 9 A 122 LEU ARG CYS LEU GLN LYS PRO ASN LEU THR SER ASP THR SEQRES 10 A 122 LYS ASP LYS GLU TYR HELIX 1 1 GLN A 96 GLY A 115 1 20 HELIX 2 2 ASP A 129 GLY A 141 1 13 HELIX 3 3 GLY A 142 ASP A 149 1 8 HELIX 4 4 LYS A 151 MET A 159 1 9 HELIX 5 5 LYS A 165 ILE A 178 1 14 HELIX 6 6 ILE A 178 GLY A 188 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1