data_2ERF # _entry.id 2ERF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ERF pdb_00002erf 10.2210/pdb2erf/pdb RCSB RCSB035003 ? ? WWPDB D_1000035003 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-17 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 5 'Structure model' 1 4 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_entry_details 6 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ERF _pdbx_database_status.recvd_initial_deposition_date 2005-10-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Z78 'Crystal Structure of the Thrombospondin-1 N-terminal Domain' unspecified PDB 1ZA4 'Crystal Structure of the Thrombospondin-1 N-terminal Domain in Complex with Arixtra' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Wang, J.' 2 'Lawler, J.' 3 # _citation.id primary _citation.title 'The structures of the thrombospondin-1 N-terminal domain and its complex with a synthetic pentameric heparin.' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 33 _citation.page_last 42 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16407063 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.09.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tan, K.' 1 ? primary 'Duquette, M.' 2 ? primary 'Liu, J.H.' 3 ? primary 'Zhang, R.' 4 ? primary 'Joachimiak, A.' 5 ? primary 'Wang, J.H.' 6 ? primary 'Lawler, J.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Thrombospondin-1 22901.035 1 ? ? 'N-terminal Domain' ? 2 water nat water 18.015 217 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTL LALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQ SVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCS ; _entity_poly.pdbx_seq_one_letter_code_can ;GGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTL LALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQ SVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ASP n 1 4 ASN n 1 5 SER n 1 6 VAL n 1 7 PHE n 1 8 ASP n 1 9 ILE n 1 10 PHE n 1 11 GLU n 1 12 LEU n 1 13 THR n 1 14 GLY n 1 15 ALA n 1 16 ALA n 1 17 ARG n 1 18 LYS n 1 19 GLY n 1 20 SER n 1 21 GLY n 1 22 ARG n 1 23 ARG n 1 24 LEU n 1 25 VAL n 1 26 LYS n 1 27 GLY n 1 28 PRO n 1 29 ASP n 1 30 PRO n 1 31 SER n 1 32 SER n 1 33 PRO n 1 34 ALA n 1 35 PHE n 1 36 ARG n 1 37 ILE n 1 38 GLU n 1 39 ASP n 1 40 ALA n 1 41 ASN n 1 42 LEU n 1 43 ILE n 1 44 PRO n 1 45 PRO n 1 46 VAL n 1 47 PRO n 1 48 ASP n 1 49 ASP n 1 50 LYS n 1 51 PHE n 1 52 GLN n 1 53 ASP n 1 54 LEU n 1 55 VAL n 1 56 ASP n 1 57 ALA n 1 58 VAL n 1 59 ARG n 1 60 THR n 1 61 GLU n 1 62 LYS n 1 63 GLY n 1 64 PHE n 1 65 LEU n 1 66 LEU n 1 67 LEU n 1 68 ALA n 1 69 SER n 1 70 LEU n 1 71 ARG n 1 72 GLN n 1 73 MET n 1 74 LYS n 1 75 LYS n 1 76 THR n 1 77 ARG n 1 78 GLY n 1 79 THR n 1 80 LEU n 1 81 LEU n 1 82 ALA n 1 83 LEU n 1 84 GLU n 1 85 ARG n 1 86 LYS n 1 87 ASP n 1 88 HIS n 1 89 SER n 1 90 GLY n 1 91 GLN n 1 92 VAL n 1 93 PHE n 1 94 SER n 1 95 VAL n 1 96 VAL n 1 97 SER n 1 98 ASN n 1 99 GLY n 1 100 LYS n 1 101 ALA n 1 102 GLY n 1 103 THR n 1 104 LEU n 1 105 ASP n 1 106 LEU n 1 107 SER n 1 108 LEU n 1 109 THR n 1 110 VAL n 1 111 GLN n 1 112 GLY n 1 113 LYS n 1 114 GLN n 1 115 HIS n 1 116 VAL n 1 117 VAL n 1 118 SER n 1 119 VAL n 1 120 GLU n 1 121 GLU n 1 122 ALA n 1 123 LEU n 1 124 LEU n 1 125 ALA n 1 126 THR n 1 127 GLY n 1 128 GLN n 1 129 TRP n 1 130 LYS n 1 131 SER n 1 132 ILE n 1 133 THR n 1 134 LEU n 1 135 PHE n 1 136 VAL n 1 137 GLN n 1 138 GLU n 1 139 ASP n 1 140 ARG n 1 141 ALA n 1 142 GLN n 1 143 LEU n 1 144 TYR n 1 145 ILE n 1 146 ASP n 1 147 CYS n 1 148 GLU n 1 149 LYS n 1 150 MET n 1 151 GLU n 1 152 ASN n 1 153 ALA n 1 154 GLU n 1 155 LEU n 1 156 ASP n 1 157 VAL n 1 158 PRO n 1 159 ILE n 1 160 GLN n 1 161 SER n 1 162 VAL n 1 163 PHE n 1 164 THR n 1 165 ARG n 1 166 ASP n 1 167 LEU n 1 168 ALA n 1 169 SER n 1 170 ILE n 1 171 ALA n 1 172 ARG n 1 173 LEU n 1 174 ARG n 1 175 ILE n 1 176 ALA n 1 177 LYS n 1 178 GLY n 1 179 GLY n 1 180 VAL n 1 181 ASN n 1 182 ASP n 1 183 ASN n 1 184 PHE n 1 185 GLN n 1 186 GLY n 1 187 VAL n 1 188 LEU n 1 189 GLN n 1 190 ASN n 1 191 VAL n 1 192 ARG n 1 193 PHE n 1 194 VAL n 1 195 PHE n 1 196 GLY n 1 197 THR n 1 198 THR n 1 199 PRO n 1 200 GLU n 1 201 ASP n 1 202 ILE n 1 203 LEU n 1 204 ARG n 1 205 ASN n 1 206 LYS n 1 207 GLY n 1 208 CYS n 1 209 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'THBS1, TSP, TSP1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fruit fly' _entity_src_gen.pdbx_host_org_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7227 _entity_src_gen.host_org_genus Drosophila _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'S2 Cell' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'pMT/BiP/V5-His A' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 7 7 GLY GLY A . n A 1 2 GLY 2 8 8 GLY GLY A . n A 1 3 ASP 3 9 9 ASP ASP A . n A 1 4 ASN 4 10 10 ASN ASN A . n A 1 5 SER 5 11 11 SER SER A . n A 1 6 VAL 6 12 12 VAL VAL A . n A 1 7 PHE 7 13 13 PHE PHE A . n A 1 8 ASP 8 14 14 ASP ASP A . n A 1 9 ILE 9 15 15 ILE ILE A . n A 1 10 PHE 10 16 16 PHE PHE A . n A 1 11 GLU 11 17 17 GLU GLU A . n A 1 12 LEU 12 18 18 LEU LEU A . n A 1 13 THR 13 19 19 THR THR A . n A 1 14 GLY 14 20 20 GLY GLY A . n A 1 15 ALA 15 21 21 ALA ALA A . n A 1 16 ALA 16 22 22 ALA ALA A . n A 1 17 ARG 17 23 23 ARG ARG A . n A 1 18 LYS 18 24 24 LYS LYS A . n A 1 19 GLY 19 25 25 GLY GLY A . n A 1 20 SER 20 26 26 SER SER A . n A 1 21 GLY 21 27 27 GLY GLY A . n A 1 22 ARG 22 28 28 ARG ARG A . n A 1 23 ARG 23 29 29 ARG ARG A . n A 1 24 LEU 24 30 30 LEU LEU A . n A 1 25 VAL 25 31 31 VAL VAL A . n A 1 26 LYS 26 32 32 LYS LYS A . n A 1 27 GLY 27 33 33 GLY GLY A . n A 1 28 PRO 28 34 34 PRO PRO A . n A 1 29 ASP 29 35 35 ASP ASP A . n A 1 30 PRO 30 36 36 PRO PRO A . n A 1 31 SER 31 37 37 SER SER A . n A 1 32 SER 32 38 38 SER SER A . n A 1 33 PRO 33 39 39 PRO PRO A . n A 1 34 ALA 34 40 40 ALA ALA A . n A 1 35 PHE 35 41 41 PHE PHE A . n A 1 36 ARG 36 42 42 ARG ARG A . n A 1 37 ILE 37 43 43 ILE ILE A . n A 1 38 GLU 38 44 44 GLU GLU A . n A 1 39 ASP 39 45 45 ASP ASP A . n A 1 40 ALA 40 46 46 ALA ALA A . n A 1 41 ASN 41 47 47 ASN ASN A . n A 1 42 LEU 42 48 48 LEU LEU A . n A 1 43 ILE 43 49 49 ILE ILE A . n A 1 44 PRO 44 50 50 PRO PRO A . n A 1 45 PRO 45 51 51 PRO PRO A . n A 1 46 VAL 46 52 52 VAL VAL A . n A 1 47 PRO 47 53 53 PRO PRO A . n A 1 48 ASP 48 54 54 ASP ASP A . n A 1 49 ASP 49 55 55 ASP ASP A . n A 1 50 LYS 50 56 56 LYS LYS A . n A 1 51 PHE 51 57 57 PHE PHE A . n A 1 52 GLN 52 58 58 GLN GLN A . n A 1 53 ASP 53 59 59 ASP ASP A . n A 1 54 LEU 54 60 60 LEU LEU A . n A 1 55 VAL 55 61 61 VAL VAL A . n A 1 56 ASP 56 62 62 ASP ASP A . n A 1 57 ALA 57 63 63 ALA ALA A . n A 1 58 VAL 58 64 64 VAL VAL A . n A 1 59 ARG 59 65 65 ARG ARG A . n A 1 60 THR 60 66 66 THR THR A . n A 1 61 GLU 61 67 67 GLU GLU A . n A 1 62 LYS 62 68 68 LYS LYS A . n A 1 63 GLY 63 69 69 GLY GLY A . n A 1 64 PHE 64 70 70 PHE PHE A . n A 1 65 LEU 65 71 71 LEU LEU A . n A 1 66 LEU 66 72 72 LEU LEU A . n A 1 67 LEU 67 73 73 LEU LEU A . n A 1 68 ALA 68 74 74 ALA ALA A . n A 1 69 SER 69 75 75 SER SER A . n A 1 70 LEU 70 76 76 LEU LEU A . n A 1 71 ARG 71 77 77 ARG ARG A . n A 1 72 GLN 72 78 78 GLN GLN A . n A 1 73 MET 73 79 79 MET MET A . n A 1 74 LYS 74 80 80 LYS LYS A . n A 1 75 LYS 75 81 81 LYS LYS A . n A 1 76 THR 76 82 82 THR THR A . n A 1 77 ARG 77 83 83 ARG ARG A . n A 1 78 GLY 78 84 84 GLY GLY A . n A 1 79 THR 79 85 85 THR THR A . n A 1 80 LEU 80 86 86 LEU LEU A . n A 1 81 LEU 81 87 87 LEU LEU A . n A 1 82 ALA 82 88 88 ALA ALA A . n A 1 83 LEU 83 89 89 LEU LEU A . n A 1 84 GLU 84 90 90 GLU GLU A . n A 1 85 ARG 85 91 91 ARG ARG A . n A 1 86 LYS 86 92 92 LYS LYS A . n A 1 87 ASP 87 93 93 ASP ASP A . n A 1 88 HIS 88 94 94 HIS HIS A . n A 1 89 SER 89 95 95 SER SER A . n A 1 90 GLY 90 96 96 GLY GLY A . n A 1 91 GLN 91 97 97 GLN GLN A . n A 1 92 VAL 92 98 98 VAL VAL A . n A 1 93 PHE 93 99 99 PHE PHE A . n A 1 94 SER 94 100 100 SER SER A . n A 1 95 VAL 95 101 101 VAL VAL A . n A 1 96 VAL 96 102 102 VAL VAL A . n A 1 97 SER 97 103 103 SER SER A . n A 1 98 ASN 98 104 104 ASN ASN A . n A 1 99 GLY 99 105 105 GLY GLY A . n A 1 100 LYS 100 106 106 LYS LYS A . n A 1 101 ALA 101 107 107 ALA ALA A . n A 1 102 GLY 102 108 108 GLY GLY A . n A 1 103 THR 103 109 109 THR THR A . n A 1 104 LEU 104 110 110 LEU LEU A . n A 1 105 ASP 105 111 111 ASP ASP A . n A 1 106 LEU 106 112 112 LEU LEU A . n A 1 107 SER 107 113 113 SER SER A . n A 1 108 LEU 108 114 114 LEU LEU A . n A 1 109 THR 109 115 115 THR THR A . n A 1 110 VAL 110 116 116 VAL VAL A . n A 1 111 GLN 111 117 117 GLN GLN A . n A 1 112 GLY 112 118 118 GLY GLY A . n A 1 113 LYS 113 119 119 LYS LYS A . n A 1 114 GLN 114 120 120 GLN GLN A . n A 1 115 HIS 115 121 121 HIS HIS A . n A 1 116 VAL 116 122 122 VAL VAL A . n A 1 117 VAL 117 123 123 VAL VAL A . n A 1 118 SER 118 124 124 SER SER A . n A 1 119 VAL 119 125 125 VAL VAL A . n A 1 120 GLU 120 126 126 GLU GLU A . n A 1 121 GLU 121 127 127 GLU GLU A . n A 1 122 ALA 122 128 128 ALA ALA A . n A 1 123 LEU 123 129 129 LEU LEU A . n A 1 124 LEU 124 130 130 LEU LEU A . n A 1 125 ALA 125 131 131 ALA ALA A . n A 1 126 THR 126 132 132 THR THR A . n A 1 127 GLY 127 133 133 GLY GLY A . n A 1 128 GLN 128 134 134 GLN GLN A . n A 1 129 TRP 129 135 135 TRP TRP A . n A 1 130 LYS 130 136 136 LYS LYS A . n A 1 131 SER 131 137 137 SER SER A . n A 1 132 ILE 132 138 138 ILE ILE A . n A 1 133 THR 133 139 139 THR THR A . n A 1 134 LEU 134 140 140 LEU LEU A . n A 1 135 PHE 135 141 141 PHE PHE A . n A 1 136 VAL 136 142 142 VAL VAL A . n A 1 137 GLN 137 143 143 GLN GLN A . n A 1 138 GLU 138 144 144 GLU GLU A . n A 1 139 ASP 139 145 145 ASP ASP A . n A 1 140 ARG 140 146 146 ARG ARG A . n A 1 141 ALA 141 147 147 ALA ALA A . n A 1 142 GLN 142 148 148 GLN GLN A . n A 1 143 LEU 143 149 149 LEU LEU A . n A 1 144 TYR 144 150 150 TYR TYR A . n A 1 145 ILE 145 151 151 ILE ILE A . n A 1 146 ASP 146 152 152 ASP ASP A . n A 1 147 CYS 147 153 153 CYS CYS A . n A 1 148 GLU 148 154 154 GLU GLU A . n A 1 149 LYS 149 155 155 LYS LYS A . n A 1 150 MET 150 156 156 MET MET A . n A 1 151 GLU 151 157 157 GLU GLU A . n A 1 152 ASN 152 158 158 ASN ASN A . n A 1 153 ALA 153 159 159 ALA ALA A . n A 1 154 GLU 154 160 160 GLU GLU A . n A 1 155 LEU 155 161 161 LEU LEU A . n A 1 156 ASP 156 162 162 ASP ASP A . n A 1 157 VAL 157 163 163 VAL VAL A . n A 1 158 PRO 158 164 164 PRO PRO A . n A 1 159 ILE 159 165 165 ILE ILE A . n A 1 160 GLN 160 166 166 GLN GLN A . n A 1 161 SER 161 167 167 SER SER A . n A 1 162 VAL 162 168 168 VAL VAL A . n A 1 163 PHE 163 169 169 PHE PHE A . n A 1 164 THR 164 170 170 THR THR A . n A 1 165 ARG 165 171 171 ARG ARG A . n A 1 166 ASP 166 172 172 ASP ASP A . n A 1 167 LEU 167 173 173 LEU LEU A . n A 1 168 ALA 168 174 174 ALA ALA A . n A 1 169 SER 169 175 175 SER SER A . n A 1 170 ILE 170 176 176 ILE ILE A . n A 1 171 ALA 171 177 177 ALA ALA A . n A 1 172 ARG 172 178 178 ARG ARG A . n A 1 173 LEU 173 179 179 LEU LEU A . n A 1 174 ARG 174 180 180 ARG ARG A . n A 1 175 ILE 175 181 181 ILE ILE A . n A 1 176 ALA 176 182 182 ALA ALA A . n A 1 177 LYS 177 183 183 LYS LYS A . n A 1 178 GLY 178 184 184 GLY GLY A . n A 1 179 GLY 179 185 185 GLY GLY A . n A 1 180 VAL 180 186 186 VAL VAL A . n A 1 181 ASN 181 187 187 ASN ASN A . n A 1 182 ASP 182 188 188 ASP ASP A . n A 1 183 ASN 183 189 189 ASN ASN A . n A 1 184 PHE 184 190 190 PHE PHE A . n A 1 185 GLN 185 191 191 GLN GLN A . n A 1 186 GLY 186 192 192 GLY GLY A . n A 1 187 VAL 187 193 193 VAL VAL A . n A 1 188 LEU 188 194 194 LEU LEU A . n A 1 189 GLN 189 195 195 GLN GLN A . n A 1 190 ASN 190 196 196 ASN ASN A . n A 1 191 VAL 191 197 197 VAL VAL A . n A 1 192 ARG 192 198 198 ARG ARG A . n A 1 193 PHE 193 199 199 PHE PHE A . n A 1 194 VAL 194 200 200 VAL VAL A . n A 1 195 PHE 195 201 201 PHE PHE A . n A 1 196 GLY 196 202 202 GLY GLY A . n A 1 197 THR 197 203 203 THR THR A . n A 1 198 THR 198 204 204 THR THR A . n A 1 199 PRO 199 205 205 PRO PRO A . n A 1 200 GLU 200 206 206 GLU GLU A . n A 1 201 ASP 201 207 207 ASP ASP A . n A 1 202 ILE 202 208 208 ILE ILE A . n A 1 203 LEU 203 209 209 LEU LEU A . n A 1 204 ARG 204 210 210 ARG ARG A . n A 1 205 ASN 205 211 211 ASN ASN A . n A 1 206 LYS 206 212 212 LYS LYS A . n A 1 207 GLY 207 213 213 GLY GLY A . n A 1 208 CYS 208 214 214 CYS CYS A . n A 1 209 SER 209 215 215 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 216 1 HOH HOH A . B 2 HOH 2 217 2 HOH HOH A . B 2 HOH 3 218 3 HOH HOH A . B 2 HOH 4 219 4 HOH HOH A . B 2 HOH 5 220 5 HOH HOH A . B 2 HOH 6 221 6 HOH HOH A . B 2 HOH 7 222 7 HOH HOH A . B 2 HOH 8 223 8 HOH HOH A . B 2 HOH 9 224 9 HOH HOH A . B 2 HOH 10 225 10 HOH HOH A . B 2 HOH 11 226 11 HOH HOH A . B 2 HOH 12 227 12 HOH HOH A . B 2 HOH 13 228 13 HOH HOH A . B 2 HOH 14 229 14 HOH HOH A . B 2 HOH 15 230 15 HOH HOH A . B 2 HOH 16 231 16 HOH HOH A . B 2 HOH 17 232 17 HOH HOH A . B 2 HOH 18 233 18 HOH HOH A . B 2 HOH 19 234 19 HOH HOH A . B 2 HOH 20 235 20 HOH HOH A . B 2 HOH 21 236 21 HOH HOH A . B 2 HOH 22 237 22 HOH HOH A . B 2 HOH 23 238 23 HOH HOH A . B 2 HOH 24 239 24 HOH HOH A . B 2 HOH 25 240 25 HOH HOH A . B 2 HOH 26 241 26 HOH HOH A . B 2 HOH 27 242 27 HOH HOH A . B 2 HOH 28 243 28 HOH HOH A . B 2 HOH 29 244 29 HOH HOH A . B 2 HOH 30 245 30 HOH HOH A . B 2 HOH 31 246 31 HOH HOH A . B 2 HOH 32 247 32 HOH HOH A . B 2 HOH 33 248 33 HOH HOH A . B 2 HOH 34 249 34 HOH HOH A . B 2 HOH 35 250 35 HOH HOH A . B 2 HOH 36 251 36 HOH HOH A . B 2 HOH 37 252 37 HOH HOH A . B 2 HOH 38 253 38 HOH HOH A . B 2 HOH 39 254 39 HOH HOH A . B 2 HOH 40 255 40 HOH HOH A . B 2 HOH 41 256 41 HOH HOH A . B 2 HOH 42 257 42 HOH HOH A . B 2 HOH 43 258 43 HOH HOH A . B 2 HOH 44 259 44 HOH HOH A . B 2 HOH 45 260 45 HOH HOH A . B 2 HOH 46 261 46 HOH HOH A . B 2 HOH 47 262 47 HOH HOH A . B 2 HOH 48 263 48 HOH HOH A . B 2 HOH 49 264 49 HOH HOH A . B 2 HOH 50 265 50 HOH HOH A . B 2 HOH 51 266 51 HOH HOH A . B 2 HOH 52 267 52 HOH HOH A . B 2 HOH 53 268 53 HOH HOH A . B 2 HOH 54 269 54 HOH HOH A . B 2 HOH 55 270 55 HOH HOH A . B 2 HOH 56 271 56 HOH HOH A . B 2 HOH 57 272 57 HOH HOH A . B 2 HOH 58 273 58 HOH HOH A . B 2 HOH 59 274 59 HOH HOH A . B 2 HOH 60 275 60 HOH HOH A . B 2 HOH 61 276 61 HOH HOH A . B 2 HOH 62 277 62 HOH HOH A . B 2 HOH 63 278 63 HOH HOH A . B 2 HOH 64 279 64 HOH HOH A . B 2 HOH 65 280 65 HOH HOH A . B 2 HOH 66 281 66 HOH HOH A . B 2 HOH 67 282 67 HOH HOH A . B 2 HOH 68 283 68 HOH HOH A . B 2 HOH 69 284 69 HOH HOH A . B 2 HOH 70 285 70 HOH HOH A . B 2 HOH 71 286 71 HOH HOH A . B 2 HOH 72 287 72 HOH HOH A . B 2 HOH 73 288 73 HOH HOH A . B 2 HOH 74 289 74 HOH HOH A . B 2 HOH 75 290 75 HOH HOH A . B 2 HOH 76 291 76 HOH HOH A . B 2 HOH 77 292 77 HOH HOH A . B 2 HOH 78 293 78 HOH HOH A . B 2 HOH 79 294 79 HOH HOH A . B 2 HOH 80 295 80 HOH HOH A . B 2 HOH 81 296 81 HOH HOH A . B 2 HOH 82 297 82 HOH HOH A . B 2 HOH 83 298 83 HOH HOH A . B 2 HOH 84 299 84 HOH HOH A . B 2 HOH 85 300 85 HOH HOH A . B 2 HOH 86 301 86 HOH HOH A . B 2 HOH 87 302 87 HOH HOH A . B 2 HOH 88 303 88 HOH HOH A . B 2 HOH 89 304 89 HOH HOH A . B 2 HOH 90 305 90 HOH HOH A . B 2 HOH 91 306 91 HOH HOH A . B 2 HOH 92 307 92 HOH HOH A . B 2 HOH 93 308 93 HOH HOH A . B 2 HOH 94 309 94 HOH HOH A . B 2 HOH 95 310 95 HOH HOH A . B 2 HOH 96 311 96 HOH HOH A . B 2 HOH 97 312 97 HOH HOH A . B 2 HOH 98 313 98 HOH HOH A . B 2 HOH 99 314 99 HOH HOH A . B 2 HOH 100 315 100 HOH HOH A . B 2 HOH 101 316 101 HOH HOH A . B 2 HOH 102 317 102 HOH HOH A . B 2 HOH 103 318 103 HOH HOH A . B 2 HOH 104 319 104 HOH HOH A . B 2 HOH 105 320 105 HOH HOH A . B 2 HOH 106 321 106 HOH HOH A . B 2 HOH 107 322 107 HOH HOH A . B 2 HOH 108 323 108 HOH HOH A . B 2 HOH 109 324 109 HOH HOH A . B 2 HOH 110 325 110 HOH HOH A . B 2 HOH 111 326 111 HOH HOH A . B 2 HOH 112 327 112 HOH HOH A . B 2 HOH 113 328 113 HOH HOH A . B 2 HOH 114 329 114 HOH HOH A . B 2 HOH 115 330 115 HOH HOH A . B 2 HOH 116 331 116 HOH HOH A . B 2 HOH 117 332 117 HOH HOH A . B 2 HOH 118 333 118 HOH HOH A . B 2 HOH 119 334 119 HOH HOH A . B 2 HOH 120 335 120 HOH HOH A . B 2 HOH 121 336 121 HOH HOH A . B 2 HOH 122 337 122 HOH HOH A . B 2 HOH 123 338 123 HOH HOH A . B 2 HOH 124 339 124 HOH HOH A . B 2 HOH 125 340 125 HOH HOH A . B 2 HOH 126 341 126 HOH HOH A . B 2 HOH 127 342 127 HOH HOH A . B 2 HOH 128 343 128 HOH HOH A . B 2 HOH 129 344 129 HOH HOH A . B 2 HOH 130 345 130 HOH HOH A . B 2 HOH 131 346 131 HOH HOH A . B 2 HOH 132 347 132 HOH HOH A . B 2 HOH 133 348 133 HOH HOH A . B 2 HOH 134 349 134 HOH HOH A . B 2 HOH 135 350 135 HOH HOH A . B 2 HOH 136 351 136 HOH HOH A . B 2 HOH 137 352 137 HOH HOH A . B 2 HOH 138 353 138 HOH HOH A . B 2 HOH 139 354 139 HOH HOH A . B 2 HOH 140 355 140 HOH HOH A . B 2 HOH 141 356 141 HOH HOH A . B 2 HOH 142 357 142 HOH HOH A . B 2 HOH 143 358 143 HOH HOH A . B 2 HOH 144 359 144 HOH HOH A . B 2 HOH 145 360 145 HOH HOH A . B 2 HOH 146 361 146 HOH HOH A . B 2 HOH 147 362 147 HOH HOH A . B 2 HOH 148 363 148 HOH HOH A . B 2 HOH 149 364 149 HOH HOH A . B 2 HOH 150 365 150 HOH HOH A . B 2 HOH 151 366 151 HOH HOH A . B 2 HOH 152 367 152 HOH HOH A . B 2 HOH 153 368 153 HOH HOH A . B 2 HOH 154 369 154 HOH HOH A . B 2 HOH 155 370 155 HOH HOH A . B 2 HOH 156 371 156 HOH HOH A . B 2 HOH 157 372 157 HOH HOH A . B 2 HOH 158 373 158 HOH HOH A . B 2 HOH 159 374 159 HOH HOH A . B 2 HOH 160 375 160 HOH HOH A . B 2 HOH 161 376 161 HOH HOH A . B 2 HOH 162 377 162 HOH HOH A . B 2 HOH 163 378 163 HOH HOH A . B 2 HOH 164 379 164 HOH HOH A . B 2 HOH 165 380 165 HOH HOH A . B 2 HOH 166 381 166 HOH HOH A . B 2 HOH 167 382 167 HOH HOH A . B 2 HOH 168 383 168 HOH HOH A . B 2 HOH 169 384 169 HOH HOH A . B 2 HOH 170 385 170 HOH HOH A . B 2 HOH 171 386 171 HOH HOH A . B 2 HOH 172 387 172 HOH HOH A . B 2 HOH 173 388 173 HOH HOH A . B 2 HOH 174 389 174 HOH HOH A . B 2 HOH 175 390 175 HOH HOH A . B 2 HOH 176 391 176 HOH HOH A . B 2 HOH 177 392 177 HOH HOH A . B 2 HOH 178 393 178 HOH HOH A . B 2 HOH 179 394 179 HOH HOH A . B 2 HOH 180 395 180 HOH HOH A . B 2 HOH 181 396 181 HOH HOH A . B 2 HOH 182 397 182 HOH HOH A . B 2 HOH 183 398 183 HOH HOH A . B 2 HOH 184 399 184 HOH HOH A . B 2 HOH 185 400 185 HOH HOH A . B 2 HOH 186 401 186 HOH HOH A . B 2 HOH 187 402 187 HOH HOH A . B 2 HOH 188 403 188 HOH HOH A . B 2 HOH 189 404 189 HOH HOH A . B 2 HOH 190 405 190 HOH HOH A . B 2 HOH 191 406 191 HOH HOH A . B 2 HOH 192 407 192 HOH HOH A . B 2 HOH 193 408 193 HOH HOH A . B 2 HOH 194 409 194 HOH HOH A . B 2 HOH 195 410 195 HOH HOH A . B 2 HOH 196 411 196 HOH HOH A . B 2 HOH 197 412 197 HOH HOH A . B 2 HOH 198 413 198 HOH HOH A . B 2 HOH 199 414 199 HOH HOH A . B 2 HOH 200 415 200 HOH HOH A . B 2 HOH 201 416 201 HOH HOH A . B 2 HOH 202 417 202 HOH HOH A . B 2 HOH 203 418 203 HOH HOH A . B 2 HOH 204 419 204 HOH HOH A . B 2 HOH 205 420 205 HOH HOH A . B 2 HOH 206 421 206 HOH HOH A . B 2 HOH 207 422 207 HOH HOH A . B 2 HOH 208 423 208 HOH HOH A . B 2 HOH 209 424 209 HOH HOH A . B 2 HOH 210 425 210 HOH HOH A . B 2 HOH 211 426 211 HOH HOH A . B 2 HOH 212 427 212 HOH HOH A . B 2 HOH 213 428 213 HOH HOH A . B 2 HOH 214 429 214 HOH HOH A . B 2 HOH 215 430 215 HOH HOH A . B 2 HOH 216 431 216 HOH HOH A . B 2 HOH 217 432 217 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 2ERF _cell.length_a 43.310 _cell.length_b 40.489 _cell.length_c 60.086 _cell.angle_alpha 90.00 _cell.angle_beta 106.99 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ERF _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2ERF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 42.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '30% PEG1500 and 0.1M Sodium Acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-07-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00931 # _reflns.entry_id 2ERF _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.45 _reflns.number_obs 34155 _reflns.number_all 34155 _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 39.7 _reflns.B_iso_Wilson_estimate 29.2 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 68.7 _reflns_shell.Rmerge_I_obs 0.376 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2422 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ERF _refine.ls_number_reflns_obs 30931 _refine.ls_number_reflns_all 30931 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.86 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 94.38 _refine.ls_R_factor_obs 0.18559 _refine.ls_R_factor_all 0.1863 _refine.ls_R_factor_R_work 0.18301 _refine.ls_R_factor_R_free 0.21672 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.7 _refine.ls_number_reflns_R_free 2575 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 25.962 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1Z78' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.099 _refine.pdbx_overall_ESU_R_Free 0.080 _refine.overall_SU_ML 0.048 _refine.overall_SU_B 2.702 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1609 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 217 _refine_hist.number_atoms_total 1826 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 22.86 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1634 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.467 1.974 ? 2206 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.165 5.000 ? 208 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.762 24.267 ? 75 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.208 15.000 ? 293 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.138 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.096 0.200 ? 253 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1229 'X-RAY DIFFRACTION' ? r_nbd_refined 0.215 0.200 ? 710 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 1135 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.158 0.200 ? 187 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.235 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.144 0.200 ? 27 'X-RAY DIFFRACTION' ? r_mcbond_it 1.473 1.500 ? 1059 'X-RAY DIFFRACTION' ? r_mcangle_it 2.270 2.000 ? 1665 'X-RAY DIFFRACTION' ? r_scbond_it 5.434 3.000 ? 617 'X-RAY DIFFRACTION' ? r_scangle_it 5.186 4.500 ? 541 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 5.607 3.000 ? 1676 'X-RAY DIFFRACTION' ? r_sphericity_free 4.395 3.000 ? 217 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.841 3.000 ? 1610 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.number_reflns_R_work 1571 _refine_ls_shell.R_factor_R_work 0.254 _refine_ls_shell.percent_reflns_obs 66.03 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 132 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2ERF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2ERF _struct.title 'Crystal Structure of the Thrombospondin-1 N-terminal Domain at 1.45A Resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ERF _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'Thrombospondin-1, TSP-1, N-terminal TSPN, HBD, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TSP1_HUMAN _struct_ref.pdbx_db_accession P07996 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMK KTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAE LDVPIQSVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTSVLLTLDNNVVNGSSPAIRTN ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ERF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 209 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P07996 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 233 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 7 _struct_ref_seq.pdbx_auth_seq_align_end 215 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 9 ? GLY A 14 ? ILE A 15 GLY A 20 1 ? 6 HELX_P HELX_P2 2 ASP A 39 ? ILE A 43 ? ASP A 45 ILE A 49 5 ? 5 HELX_P HELX_P3 3 PRO A 47 ? LYS A 62 ? PRO A 53 LYS A 68 1 ? 16 HELX_P HELX_P4 4 PRO A 158 ? VAL A 162 ? PRO A 164 VAL A 168 5 ? 5 HELX_P HELX_P5 5 ASP A 166 ? ILE A 170 ? ASP A 172 ILE A 176 1 ? 5 HELX_P HELX_P6 6 THR A 198 ? ASN A 205 ? THR A 204 ASN A 211 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 147 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 208 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 153 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 214 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.041 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 147 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 208 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 153 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 214 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? ASP A 8 ? VAL A 12 ASP A 14 A 2 GLY A 186 ? VAL A 194 ? GLY A 192 VAL A 200 A 3 ALA A 34 ? ILE A 37 ? ALA A 40 ILE A 43 A 4 ARG A 22 ? VAL A 25 ? ARG A 28 VAL A 31 B 1 VAL A 6 ? ASP A 8 ? VAL A 12 ASP A 14 B 2 GLY A 186 ? VAL A 194 ? GLY A 192 VAL A 200 B 3 GLY A 63 ? GLN A 72 ? GLY A 69 GLN A 78 B 4 TRP A 129 ? GLN A 137 ? TRP A 135 GLN A 143 B 5 ARG A 140 ? ILE A 145 ? ARG A 146 ILE A 151 B 6 LYS A 149 ? GLU A 154 ? LYS A 155 GLU A 160 C 1 LYS A 113 ? VAL A 119 ? LYS A 119 VAL A 125 C 2 THR A 103 ? VAL A 110 ? THR A 109 VAL A 116 C 3 GLN A 91 ? ASN A 98 ? GLN A 97 ASN A 104 C 4 ARG A 77 ? ARG A 85 ? ARG A 83 ARG A 91 C 5 ALA A 171 ? ILE A 175 ? ALA A 177 ILE A 181 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 7 ? N PHE A 13 O PHE A 193 ? O PHE A 199 A 2 3 O LEU A 188 ? O LEU A 194 N PHE A 35 ? N PHE A 41 A 3 4 O ARG A 36 ? O ARG A 42 N ARG A 23 ? N ARG A 29 B 1 2 N PHE A 7 ? N PHE A 13 O PHE A 193 ? O PHE A 199 B 2 3 O ARG A 192 ? O ARG A 198 N LEU A 67 ? N LEU A 73 B 3 4 N LEU A 66 ? N LEU A 72 O LEU A 134 ? O LEU A 140 B 4 5 N PHE A 135 ? N PHE A 141 O GLN A 142 ? O GLN A 148 B 5 6 N LEU A 143 ? N LEU A 149 O GLU A 151 ? O GLU A 157 C 1 2 O HIS A 115 ? O HIS A 121 N LEU A 108 ? N LEU A 114 C 2 3 O ASP A 105 ? O ASP A 111 N VAL A 96 ? N VAL A 102 C 3 4 O VAL A 95 ? O VAL A 101 N LEU A 80 ? N LEU A 86 C 4 5 N GLU A 84 ? N GLU A 90 O ARG A 172 ? O ARG A 178 # _pdbx_entry_details.entry_id 2ERF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 90 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 428 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 144 ? ? 54.34 -122.96 2 1 ASP A 152 ? ? 48.39 -134.64 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE SEQUENCE OF THE WHOLE CONSTRUCT IS LISTED HERE: RSPWNRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDA NLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTLLALERKDHSG QVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDR AQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGGVNDNFQGVLQN VRFVFGTTPEDILRNKGCSSSTSVLLTLDNNVVNGSSPAIRTNTGHHHHHH THE PURIFIED PROTEIN WAS TREATED WITH CHYMOTRYPSIN AND RE-PURIFIED BEFORE CRYSTALLIZATION. THE EXACT N-TERMINAL OR C-TERMINAL SEQUENCES ARE NOT KNOWN. THE SEQRES REPRESENTS THE RESIDUES IN THE COORDINATES. ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Z78 _pdbx_initial_refinement_model.details 'PDB ENTRY 1Z78' # _atom_sites.entry_id 2ERF _atom_sites.fract_transf_matrix[1][1] 0.023089 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007053 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024698 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017402 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_