HEADER ISOMERASE 25-OCT-05 2ES7 TITLE CRYSTAL STRUCTURE OF Q8ZP25 FROM SALMONELLA TYPHIMURIUM LT2. NESG TITLE 2 TARGET STR70 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOL-DISULFIDE ISOMERASE AND THIOREDOXIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: Q8ZP25_SALTY; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: STM1790; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, NESG, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BENACH,M.SU,F.FOROUHAR,Y.CHEN,C.K.HO,H.JANJUA,K.CUNNINGHAM,L.-C.MA, AUTHOR 2 X.RONG,J.LIU,M.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE,L.TONG, AUTHOR 3 J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 13-NOV-24 2ES7 1 SEQADV LINK REVDAT 4 13-JUL-11 2ES7 1 VERSN REVDAT 3 24-FEB-09 2ES7 1 VERSN REVDAT 2 27-FEB-07 2ES7 1 AUTHOR REVDAT 1 01-NOV-05 2ES7 0 JRNL AUTH J.BENACH,M.SU,F.FOROUHAR,Y.CHEN,H.JANJUA,B.X.RONG,T.B.ACTON, JRNL AUTH 2 G.T.MONTELIONE,J.F.HUNT,L.TONG JRNL TITL CRYSTAL STRUCTURE OF Q8ZP25 FROM SALMONELLA TYPHIMURIUM LT2 JRNL TITL 2 NESG TARGET STR70. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 364563.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 24633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.285 REMARK 3 FREE R VALUE : 0.338 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2372 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3629 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 379 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.26000 REMARK 3 B22 (A**2) : -4.69000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.54 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.53 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.360 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.950 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.16 REMARK 3 BSOL : 98.41 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ES7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000035027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925, 0.97955, 0.96782 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25130 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.12200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.57800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 THR A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 ASP A 29 REMARK 465 TRP A 30 REMARK 465 ILE A 31 REMARK 465 LYS A 32 REMARK 465 ARG A 33 REMARK 465 THR A 48 REMARK 465 PRO A 49 REMARK 465 GLU A 50 REMARK 465 VAL A 51 REMARK 465 LYS A 102 REMARK 465 LEU A 103 REMARK 465 ARG A 104 REMARK 465 GLY A 105 REMARK 465 THR A 126 REMARK 465 PRO A 127 REMARK 465 ALA A 128 REMARK 465 ALA A 129 REMARK 465 GLN A 130 REMARK 465 GLU A 131 REMARK 465 THR A 132 REMARK 465 VAL A 133 REMARK 465 GLN A 134 REMARK 465 LEU A 135 REMARK 465 GLU A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 ASP B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 THR B 26 REMARK 465 VAL B 27 REMARK 465 ASP B 28 REMARK 465 ASP B 29 REMARK 465 TRP B 30 REMARK 465 ILE B 31 REMARK 465 LYS B 32 REMARK 465 ARG B 33 REMARK 465 THR B 48 REMARK 465 PRO B 49 REMARK 465 GLU B 50 REMARK 465 VAL B 51 REMARK 465 LYS B 102 REMARK 465 LEU B 103 REMARK 465 ARG B 104 REMARK 465 GLY B 105 REMARK 465 THR B 126 REMARK 465 PRO B 127 REMARK 465 ALA B 128 REMARK 465 ALA B 129 REMARK 465 GLN B 130 REMARK 465 GLU B 131 REMARK 465 THR B 132 REMARK 465 VAL B 133 REMARK 465 GLN B 134 REMARK 465 LEU B 135 REMARK 465 GLU B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 ASN C 3 REMARK 465 ASP C 4 REMARK 465 THR C 5 REMARK 465 PRO C 6 REMARK 465 THR C 26 REMARK 465 VAL C 27 REMARK 465 ASP C 28 REMARK 465 ASP C 29 REMARK 465 TRP C 30 REMARK 465 ILE C 31 REMARK 465 LYS C 32 REMARK 465 ARG C 33 REMARK 465 THR C 48 REMARK 465 PRO C 49 REMARK 465 GLU C 50 REMARK 465 VAL C 51 REMARK 465 LYS C 102 REMARK 465 LEU C 103 REMARK 465 ARG C 104 REMARK 465 GLY C 105 REMARK 465 THR C 126 REMARK 465 PRO C 127 REMARK 465 ALA C 128 REMARK 465 ALA C 129 REMARK 465 GLN C 130 REMARK 465 GLU C 131 REMARK 465 THR C 132 REMARK 465 VAL C 133 REMARK 465 GLN C 134 REMARK 465 LEU C 135 REMARK 465 GLU C 136 REMARK 465 HIS C 137 REMARK 465 HIS C 138 REMARK 465 HIS C 139 REMARK 465 HIS C 140 REMARK 465 HIS C 141 REMARK 465 HIS C 142 REMARK 465 MSE D 1 REMARK 465 ALA D 2 REMARK 465 ASN D 3 REMARK 465 ASP D 4 REMARK 465 THR D 5 REMARK 465 PRO D 6 REMARK 465 THR D 26 REMARK 465 VAL D 27 REMARK 465 ASP D 28 REMARK 465 ASP D 29 REMARK 465 TRP D 30 REMARK 465 ILE D 31 REMARK 465 LYS D 32 REMARK 465 ARG D 33 REMARK 465 THR D 48 REMARK 465 PRO D 49 REMARK 465 GLU D 50 REMARK 465 VAL D 51 REMARK 465 LYS D 102 REMARK 465 LEU D 103 REMARK 465 ARG D 104 REMARK 465 GLY D 105 REMARK 465 THR D 126 REMARK 465 PRO D 127 REMARK 465 ALA D 128 REMARK 465 ALA D 129 REMARK 465 GLN D 130 REMARK 465 GLU D 131 REMARK 465 THR D 132 REMARK 465 VAL D 133 REMARK 465 GLN D 134 REMARK 465 LEU D 135 REMARK 465 GLU D 136 REMARK 465 HIS D 137 REMARK 465 HIS D 138 REMARK 465 HIS D 139 REMARK 465 HIS D 140 REMARK 465 HIS D 141 REMARK 465 HIS D 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 99 N ASP A 100 0.42 REMARK 500 O THR A 99 CA ASP A 100 1.17 REMARK 500 O PHE A 98 N THR A 99 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 98 C THR A 99 N -0.424 REMARK 500 THR A 99 N THR A 99 CA -0.128 REMARK 500 THR A 99 C ASP A 100 N -0.494 REMARK 500 PHE D 98 C THR D 99 N 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 98 CA - C - N ANGL. DEV. = 18.4 DEGREES REMARK 500 PHE A 98 O - C - N ANGL. DEV. = -18.0 DEGREES REMARK 500 THR A 99 O - C - N ANGL. DEV. = 112.3 DEGREES REMARK 500 ASP A 100 C - N - CA ANGL. DEV. = 37.6 DEGREES REMARK 500 GLY A 101 N - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 THR B 99 CA - C - N ANGL. DEV. = -19.0 DEGREES REMARK 500 THR B 99 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 THR C 99 CA - C - N ANGL. DEV. = -18.9 DEGREES REMARK 500 THR C 99 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 THR D 99 CA - C - N ANGL. DEV. = -19.0 DEGREES REMARK 500 THR D 99 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 32.98 -66.62 REMARK 500 ARG A 46 42.58 -70.79 REMARK 500 ASP A 76 -173.54 -63.31 REMARK 500 ARG A 86 -37.56 -39.47 REMARK 500 ASP A 100 1.28 39.08 REMARK 500 ALA B 24 32.99 -66.93 REMARK 500 ARG B 46 42.57 -70.44 REMARK 500 ASP B 76 -174.04 -64.23 REMARK 500 GLN B 79 -9.17 -58.35 REMARK 500 ILE B 83 86.79 -69.80 REMARK 500 ASP B 100 2.78 94.48 REMARK 500 ALA C 24 35.56 -68.21 REMARK 500 ARG C 46 41.08 -69.41 REMARK 500 ASP C 76 -173.15 -65.46 REMARK 500 ARG C 86 -37.54 -39.62 REMARK 500 ASP C 100 2.78 94.44 REMARK 500 ALA D 24 34.41 -69.25 REMARK 500 ARG D 46 40.97 -71.02 REMARK 500 ASP D 76 -174.44 -65.55 REMARK 500 GLN D 79 -7.76 -58.77 REMARK 500 ARG D 86 -37.63 -38.92 REMARK 500 ASP D 100 2.69 94.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 99 142.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STR70 RELATED DB: TARGETDB DBREF 2ES7 A 1 134 GB 16420320 AAL20705 1 134 DBREF 2ES7 B 1 134 GB 16420320 AAL20705 1 134 DBREF 2ES7 C 1 134 GB 16420320 AAL20705 1 134 DBREF 2ES7 D 1 134 GB 16420320 AAL20705 1 134 SEQADV 2ES7 MSE A 1 GB 16420320 MET 1 MODIFIED RESIDUE SEQADV 2ES7 MSE A 57 GB 16420320 MET 57 MODIFIED RESIDUE SEQADV 2ES7 MSE A 120 GB 16420320 MET 120 MODIFIED RESIDUE SEQADV 2ES7 LEU A 135 GB 16420320 CLONING ARTIFACT SEQADV 2ES7 GLU A 136 GB 16420320 CLONING ARTIFACT SEQADV 2ES7 HIS A 137 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS A 138 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS A 139 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS A 140 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS A 141 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS A 142 GB 16420320 EXPRESSION TAG SEQADV 2ES7 MSE B 1 GB 16420320 MET 1 MODIFIED RESIDUE SEQADV 2ES7 MSE B 57 GB 16420320 MET 57 MODIFIED RESIDUE SEQADV 2ES7 MSE B 120 GB 16420320 MET 120 MODIFIED RESIDUE SEQADV 2ES7 LEU B 135 GB 16420320 CLONING ARTIFACT SEQADV 2ES7 GLU B 136 GB 16420320 CLONING ARTIFACT SEQADV 2ES7 HIS B 137 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS B 138 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS B 139 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS B 140 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS B 141 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS B 142 GB 16420320 EXPRESSION TAG SEQADV 2ES7 MSE C 1 GB 16420320 MET 1 MODIFIED RESIDUE SEQADV 2ES7 MSE C 57 GB 16420320 MET 57 MODIFIED RESIDUE SEQADV 2ES7 MSE C 120 GB 16420320 MET 120 MODIFIED RESIDUE SEQADV 2ES7 LEU C 135 GB 16420320 CLONING ARTIFACT SEQADV 2ES7 GLU C 136 GB 16420320 CLONING ARTIFACT SEQADV 2ES7 HIS C 137 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS C 138 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS C 139 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS C 140 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS C 141 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS C 142 GB 16420320 EXPRESSION TAG SEQADV 2ES7 MSE D 1 GB 16420320 MET 1 MODIFIED RESIDUE SEQADV 2ES7 MSE D 57 GB 16420320 MET 57 MODIFIED RESIDUE SEQADV 2ES7 MSE D 120 GB 16420320 MET 120 MODIFIED RESIDUE SEQADV 2ES7 LEU D 135 GB 16420320 CLONING ARTIFACT SEQADV 2ES7 GLU D 136 GB 16420320 CLONING ARTIFACT SEQADV 2ES7 HIS D 137 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS D 138 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS D 139 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS D 140 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS D 141 GB 16420320 EXPRESSION TAG SEQADV 2ES7 HIS D 142 GB 16420320 EXPRESSION TAG SEQRES 1 A 142 MSE ALA ASN ASP THR PRO PHE SER ALA LEU TRP GLN ARG SEQRES 2 A 142 LEU LEU THR ARG GLY TRP GLN PRO VAL GLU ALA SER THR SEQRES 3 A 142 VAL ASP ASP TRP ILE LYS ARG VAL GLY ASP GLY VAL ILE SEQRES 4 A 142 LEU LEU SER SER ASP PRO ARG ARG THR PRO GLU VAL SER SEQRES 5 A 142 ASP ASN PRO VAL MSE ILE ALA GLU LEU LEU ARG GLU PHE SEQRES 6 A 142 PRO GLN PHE ASP TRP GLN VAL ALA VAL ALA ASP LEU GLU SEQRES 7 A 142 GLN SER GLU ALA ILE GLY ASP ARG PHE ASN VAL ARG ARG SEQRES 8 A 142 PHE PRO ALA THR LEU VAL PHE THR ASP GLY LYS LEU ARG SEQRES 9 A 142 GLY ALA LEU SER GLY ILE HIS PRO TRP ALA GLU LEU LEU SEQRES 10 A 142 THR LEU MSE ARG SER ILE VAL ASP THR PRO ALA ALA GLN SEQRES 11 A 142 GLU THR VAL GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 142 MSE ALA ASN ASP THR PRO PHE SER ALA LEU TRP GLN ARG SEQRES 2 B 142 LEU LEU THR ARG GLY TRP GLN PRO VAL GLU ALA SER THR SEQRES 3 B 142 VAL ASP ASP TRP ILE LYS ARG VAL GLY ASP GLY VAL ILE SEQRES 4 B 142 LEU LEU SER SER ASP PRO ARG ARG THR PRO GLU VAL SER SEQRES 5 B 142 ASP ASN PRO VAL MSE ILE ALA GLU LEU LEU ARG GLU PHE SEQRES 6 B 142 PRO GLN PHE ASP TRP GLN VAL ALA VAL ALA ASP LEU GLU SEQRES 7 B 142 GLN SER GLU ALA ILE GLY ASP ARG PHE ASN VAL ARG ARG SEQRES 8 B 142 PHE PRO ALA THR LEU VAL PHE THR ASP GLY LYS LEU ARG SEQRES 9 B 142 GLY ALA LEU SER GLY ILE HIS PRO TRP ALA GLU LEU LEU SEQRES 10 B 142 THR LEU MSE ARG SER ILE VAL ASP THR PRO ALA ALA GLN SEQRES 11 B 142 GLU THR VAL GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 142 MSE ALA ASN ASP THR PRO PHE SER ALA LEU TRP GLN ARG SEQRES 2 C 142 LEU LEU THR ARG GLY TRP GLN PRO VAL GLU ALA SER THR SEQRES 3 C 142 VAL ASP ASP TRP ILE LYS ARG VAL GLY ASP GLY VAL ILE SEQRES 4 C 142 LEU LEU SER SER ASP PRO ARG ARG THR PRO GLU VAL SER SEQRES 5 C 142 ASP ASN PRO VAL MSE ILE ALA GLU LEU LEU ARG GLU PHE SEQRES 6 C 142 PRO GLN PHE ASP TRP GLN VAL ALA VAL ALA ASP LEU GLU SEQRES 7 C 142 GLN SER GLU ALA ILE GLY ASP ARG PHE ASN VAL ARG ARG SEQRES 8 C 142 PHE PRO ALA THR LEU VAL PHE THR ASP GLY LYS LEU ARG SEQRES 9 C 142 GLY ALA LEU SER GLY ILE HIS PRO TRP ALA GLU LEU LEU SEQRES 10 C 142 THR LEU MSE ARG SER ILE VAL ASP THR PRO ALA ALA GLN SEQRES 11 C 142 GLU THR VAL GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 142 MSE ALA ASN ASP THR PRO PHE SER ALA LEU TRP GLN ARG SEQRES 2 D 142 LEU LEU THR ARG GLY TRP GLN PRO VAL GLU ALA SER THR SEQRES 3 D 142 VAL ASP ASP TRP ILE LYS ARG VAL GLY ASP GLY VAL ILE SEQRES 4 D 142 LEU LEU SER SER ASP PRO ARG ARG THR PRO GLU VAL SER SEQRES 5 D 142 ASP ASN PRO VAL MSE ILE ALA GLU LEU LEU ARG GLU PHE SEQRES 6 D 142 PRO GLN PHE ASP TRP GLN VAL ALA VAL ALA ASP LEU GLU SEQRES 7 D 142 GLN SER GLU ALA ILE GLY ASP ARG PHE ASN VAL ARG ARG SEQRES 8 D 142 PHE PRO ALA THR LEU VAL PHE THR ASP GLY LYS LEU ARG SEQRES 9 D 142 GLY ALA LEU SER GLY ILE HIS PRO TRP ALA GLU LEU LEU SEQRES 10 D 142 THR LEU MSE ARG SER ILE VAL ASP THR PRO ALA ALA GLN SEQRES 11 D 142 GLU THR VAL GLN LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2ES7 MSE A 57 MET SELENOMETHIONINE MODRES 2ES7 MSE A 120 MET SELENOMETHIONINE MODRES 2ES7 MSE B 57 MET SELENOMETHIONINE MODRES 2ES7 MSE B 120 MET SELENOMETHIONINE MODRES 2ES7 MSE C 57 MET SELENOMETHIONINE MODRES 2ES7 MSE C 120 MET SELENOMETHIONINE MODRES 2ES7 MSE D 57 MET SELENOMETHIONINE MODRES 2ES7 MSE D 120 MET SELENOMETHIONINE HET MSE A 57 8 HET MSE A 120 8 HET MSE B 57 8 HET MSE B 120 8 HET MSE C 57 8 HET MSE C 120 8 HET MSE D 57 8 HET MSE D 120 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 HOH *560(H2 O) HELIX 1 1 PHE A 7 THR A 16 1 10 HELIX 2 2 ASP A 53 GLU A 64 1 12 HELIX 3 3 ASP A 76 ARG A 86 1 11 HELIX 4 4 PRO A 112 ASP A 125 1 14 HELIX 5 5 PHE B 7 THR B 16 1 10 HELIX 6 6 ASP B 53 GLU B 64 1 12 HELIX 7 7 ASP B 76 ARG B 86 1 11 HELIX 8 8 PRO B 112 ASP B 125 1 14 HELIX 9 9 PHE C 7 THR C 16 1 10 HELIX 10 10 ASP C 53 GLU C 64 1 12 HELIX 11 11 ASP C 76 ARG C 86 1 11 HELIX 12 12 PRO C 112 ASP C 125 1 14 HELIX 13 13 PHE D 7 THR D 16 1 10 HELIX 14 14 ASP D 53 GLU D 64 1 12 HELIX 15 15 ASP D 76 ARG D 86 1 11 HELIX 16 16 PRO D 112 ASP D 125 1 14 SHEET 1 A 5 GLN A 20 PRO A 21 0 SHEET 2 A 5 GLN A 71 ALA A 75 1 O VAL A 74 N GLN A 20 SHEET 3 A 5 GLY A 37 LEU A 41 1 N VAL A 38 O GLN A 71 SHEET 4 A 5 ALA A 94 PHE A 98 -1 O LEU A 96 N ILE A 39 SHEET 5 A 5 LEU A 107 SER A 108 -1 O LEU A 107 N THR A 95 SHEET 1 B 5 GLN B 20 PRO B 21 0 SHEET 2 B 5 GLN B 71 ALA B 75 1 O VAL B 74 N GLN B 20 SHEET 3 B 5 ASP B 36 LEU B 41 1 N VAL B 38 O GLN B 71 SHEET 4 B 5 ALA B 94 THR B 99 -1 O PHE B 98 N GLY B 37 SHEET 5 B 5 LEU B 107 SER B 108 -1 O LEU B 107 N THR B 95 SHEET 1 C 5 GLN C 20 PRO C 21 0 SHEET 2 C 5 GLN C 71 ALA C 75 1 O VAL C 74 N GLN C 20 SHEET 3 C 5 ASP C 36 LEU C 41 1 N VAL C 38 O GLN C 71 SHEET 4 C 5 ALA C 94 THR C 99 -1 O PHE C 98 N GLY C 37 SHEET 5 C 5 LEU C 107 SER C 108 -1 O LEU C 107 N THR C 95 SHEET 1 D 5 GLN D 20 PRO D 21 0 SHEET 2 D 5 GLN D 71 ALA D 75 1 O VAL D 74 N GLN D 20 SHEET 3 D 5 ASP D 36 LEU D 41 1 N VAL D 38 O GLN D 71 SHEET 4 D 5 ALA D 94 THR D 99 -1 O ALA D 94 N LEU D 41 SHEET 5 D 5 LEU D 107 SER D 108 -1 O LEU D 107 N THR D 95 LINK C VAL A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N ILE A 58 1555 1555 1.32 LINK C LEU A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N ARG A 121 1555 1555 1.32 LINK C VAL B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N ILE B 58 1555 1555 1.32 LINK C LEU B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N ARG B 121 1555 1555 1.32 LINK C VAL C 56 N MSE C 57 1555 1555 1.33 LINK C MSE C 57 N ILE C 58 1555 1555 1.33 LINK C LEU C 119 N MSE C 120 1555 1555 1.33 LINK C MSE C 120 N ARG C 121 1555 1555 1.32 LINK C VAL D 56 N MSE D 57 1555 1555 1.33 LINK C MSE D 57 N ILE D 58 1555 1555 1.32 LINK C LEU D 119 N MSE D 120 1555 1555 1.33 LINK C MSE D 120 N ARG D 121 1555 1555 1.32 CISPEP 1 PHE A 92 PRO A 93 0 -0.03 CISPEP 2 PHE B 92 PRO B 93 0 0.35 CISPEP 3 PHE C 92 PRO C 93 0 -0.11 CISPEP 4 PHE D 92 PRO D 93 0 0.31 CRYST1 39.549 71.156 95.004 90.00 90.11 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025285 0.000000 0.000049 0.00000 SCALE2 0.000000 0.014054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010526 0.00000