HEADER HYDROLASE 26-OCT-05 2ESS TITLE CRYSTAL STRUCTURE OF AN ACYL-ACP THIOESTERASE (NP_810988.1) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-ACP THIOESTERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT2075; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NP_810988.1, ACYL-ACP THIOESTERASE, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 13-NOV-24 2ESS 1 REMARK REVDAT 5 25-JAN-23 2ESS 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2ESS 1 VERSN REVDAT 3 24-FEB-09 2ESS 1 VERSN REVDAT 2 31-OCT-06 2ESS 1 TITLE KEYWDS JRNL REMARK REVDAT 2 2 1 MASTER REVDAT 1 28-MAR-06 2ESS 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN ACYL-ACP THIOESTERASE (NP_810988.1) JRNL TITL 2 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.90 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.378 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2072 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1390 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2820 ; 1.542 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3367 ; 0.979 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 7.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;32.273 ;23.592 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 338 ;12.624 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2298 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 449 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 339 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1454 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 976 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1114 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.335 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.271 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1279 ; 2.118 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 498 ; 0.517 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1997 ; 3.130 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 917 ; 5.351 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 816 ; 7.478 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4260 6.5100 8.6310 REMARK 3 T TENSOR REMARK 3 T11: -0.0947 T22: -0.1547 REMARK 3 T33: -0.1369 T12: 0.0045 REMARK 3 T13: -0.0205 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.0543 L22: 1.5093 REMARK 3 L33: 1.1892 L12: 0.0403 REMARK 3 L13: 0.1983 L23: -0.2997 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: 0.0472 S13: 0.0489 REMARK 3 S21: -0.0725 S22: 0.0470 S23: 0.0944 REMARK 3 S31: 0.1028 S32: -0.0139 S33: -0.0260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. DISORDERED MODEL BETWEEN RESIDUES 124-129 WAS NOT MODELED. REMARK 3 4. CA MODELED BASED ON ANOMALOUS DIFFERENCE MAP. REMARK 3 5. CHLORINE AND MPD MODELED BASED UPON CRYSTALLIZTION CONDITIONS. REMARK 4 REMARK 4 2ESS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000035048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000, 0.9796 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24794 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.09600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0% MPD, 0.2M NACL, 0.1M ACETATE, PH REMARK 280 4.6 , VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.59000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.18000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.18000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -226.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.18000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 125 REMARK 465 LEU A 126 REMARK 465 LEU A 127 REMARK 465 ALA A 128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 70 CD OE1 OE2 REMARK 470 LYS A 104 CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 147 CE NZ REMARK 470 LYS A 152 CD CE NZ REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 141 O HOH A 406 2.17 REMARK 500 OH TYR A 108 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 241 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 121 26.87 46.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 129 HIS A 130 -132.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MPD A 253 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 248 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 170 OD2 REMARK 620 2 HIS A 174 NE2 84.8 REMARK 620 3 HOH A 381 O 113.4 121.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 256 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 359110 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION REMARK 999 TAG, MGSDKIHHHHHHDYDIPTTENLYFQG. THE TAG WAS REMOVED WITH REMARK 999 TEV-PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2ESS A 1 247 UNP Q8A611 Q8A611_BACTN 1 247 SEQADV 2ESS GLY A 0 UNP Q8A611 EXPRESSION TAG SEQADV 2ESS MSE A 1 UNP Q8A611 MET 1 MODIFIED RESIDUE SEQADV 2ESS MSE A 27 UNP Q8A611 MET 27 MODIFIED RESIDUE SEQADV 2ESS MSE A 71 UNP Q8A611 MET 71 MODIFIED RESIDUE SEQADV 2ESS MSE A 115 UNP Q8A611 MET 115 MODIFIED RESIDUE SEQADV 2ESS MSE A 203 UNP Q8A611 MET 203 MODIFIED RESIDUE SEQRES 1 A 248 GLY MSE SER GLU GLU ASN LYS ILE GLY THR TYR GLN PHE SEQRES 2 A 248 VAL ALA GLU PRO PHE HIS VAL ASP PHE ASN GLY ARG LEU SEQRES 3 A 248 THR MSE GLY VAL LEU GLY ASN HIS LEU LEU ASN CYS ALA SEQRES 4 A 248 GLY PHE HIS ALA SER ASP ARG GLY PHE GLY ILE ALA THR SEQRES 5 A 248 LEU ASN GLU ASP ASN TYR THR TRP VAL LEU SER ARG LEU SEQRES 6 A 248 ALA ILE GLU LEU ASP GLU MSE PRO TYR GLN TYR GLU LYS SEQRES 7 A 248 PHE SER VAL GLN THR TRP VAL GLU ASN VAL TYR ARG LEU SEQRES 8 A 248 PHE THR ASP ARG ASN PHE ALA VAL ILE ASP LYS ASP GLY SEQRES 9 A 248 LYS LYS ILE GLY TYR ALA ARG SER VAL TRP ALA MSE ILE SEQRES 10 A 248 ASN LEU ASN THR ARG LYS PRO ALA ASP LEU LEU ALA LEU SEQRES 11 A 248 HIS GLY GLY SER ILE VAL ASP TYR ILE CYS ASP GLU PRO SEQRES 12 A 248 CYS PRO ILE GLU LYS PRO SER ARG ILE LYS VAL THR SER SEQRES 13 A 248 ASN GLN PRO VAL ALA THR LEU THR ALA LYS TYR SER ASP SEQRES 14 A 248 ILE ASP ILE ASN GLY HIS VAL ASN SER ILE ARG TYR ILE SEQRES 15 A 248 GLU HIS ILE LEU ASP LEU PHE PRO ILE GLU LEU TYR GLN SEQRES 16 A 248 THR LYS ARG ILE ARG ARG PHE GLU MSE ALA TYR VAL ALA SEQRES 17 A 248 GLU SER TYR PHE GLY ASP GLU LEU SER PHE PHE CYS ASP SEQRES 18 A 248 GLU VAL SER GLU ASN GLU PHE HIS VAL GLU VAL LYS LYS SEQRES 19 A 248 ASN GLY SER GLU VAL VAL CYS ARG SER LYS VAL ILE PHE SEQRES 20 A 248 GLU MODRES 2ESS MSE A 1 MET SELENOMETHIONINE MODRES 2ESS MSE A 27 MET SELENOMETHIONINE MODRES 2ESS MSE A 71 MET SELENOMETHIONINE MODRES 2ESS MSE A 115 MET SELENOMETHIONINE MODRES 2ESS MSE A 203 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 27 8 HET MSE A 71 8 HET MSE A 115 8 HET MSE A 203 8 HET CA A 248 1 HET CL A 249 1 HET CL A 250 1 HET CL A 251 1 HET MPD A 252 8 HET MPD A 253 7 HET MPD A 254 8 HET MPD A 255 8 HET MPD A 256 8 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CA CA 2+ FORMUL 3 CL 3(CL 1-) FORMUL 6 MPD 5(C6 H14 O2) FORMUL 11 HOH *158(H2 O) HELIX 1 1 GLU A 3 ILE A 7 5 5 HELIX 2 2 GLU A 15 VAL A 19 5 5 HELIX 3 3 THR A 26 ARG A 45 1 20 HELIX 4 4 GLY A 48 ASP A 55 1 8 HELIX 5 5 SER A 133 ILE A 138 5 6 HELIX 6 6 LYS A 165 ILE A 169 5 5 HELIX 7 7 ASN A 176 ASP A 186 1 11 HELIX 8 8 PRO A 189 LYS A 196 1 8 SHEET 1 A10 GLY A 8 VAL A 13 0 SHEET 2 A10 LYS A 77 VAL A 87 -1 O PHE A 78 N PHE A 12 SHEET 3 A10 PHE A 91 ILE A 99 -1 O ILE A 99 N SER A 79 SHEET 4 A10 LYS A 105 ASN A 117 -1 O GLY A 107 N VAL A 98 SHEET 5 A10 TYR A 57 LEU A 68 -1 N VAL A 60 O ALA A 114 SHEET 6 A10 ARG A 197 TYR A 205 -1 O MSE A 203 N LEU A 64 SHEET 7 A10 GLU A 237 GLU A 247 -1 O ILE A 245 N ARG A 200 SHEET 8 A10 GLU A 226 LYS A 233 -1 N VAL A 231 O CYS A 240 SHEET 9 A10 GLU A 214 SER A 223 -1 N ASP A 220 O HIS A 228 SHEET 10 A10 ALA A 160 THR A 163 -1 N LEU A 162 O LEU A 215 LINK C MSE A 1 N SER A 2 1555 1555 1.34 LINK C THR A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N GLY A 28 1555 1555 1.34 LINK C GLU A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N PRO A 72 1555 1555 1.33 LINK C ALA A 114 N MSE A 115 1555 1555 1.32 LINK C MSE A 115 N ILE A 116 1555 1555 1.32 LINK C GLU A 202 N MSE A 203 1555 1555 1.31 LINK C MSE A 203 N ALA A 204 1555 1555 1.33 LINK OD2 ASP A 170 CA CA A 248 1555 1555 1.90 LINK NE2AHIS A 174 CA CA A 248 1555 1555 2.30 LINK CA CA A 248 O HOH A 381 1555 1555 2.21 SITE 1 AC1 3 ASP A 170 HIS A 174 HOH A 381 SITE 1 AC2 4 SER A 43 GLY A 48 THR A 51 ARG A 150 SITE 1 AC3 5 ARG A 63 ARG A 150 ILE A 151 ALA A 204 SITE 2 AC3 5 ARG A 241 SITE 1 AC4 5 VAL A 13 GLU A 15 HIS A 18 HIS A 33 SITE 2 AC4 5 HOH A 395 SITE 1 AC5 6 ALA A 38 GLY A 39 ALA A 42 TRP A 59 SITE 2 AC5 6 ARG A 94 TRP A 113 SITE 1 AC6 6 GLU A 67 ASP A 69 LYS A 105 TYR A 108 SITE 2 AC6 6 ARG A 199 HOH A 306 SITE 1 AC7 6 GLU A 54 SER A 62 ARG A 63 TYR A 205 SITE 2 AC7 6 HOH A 283 HOH A 335 SITE 1 AC8 3 LEU A 35 ASN A 36 HOH A 355 SITE 1 AC9 5 PHE A 21 GLY A 173 ILE A 190 GLN A 194 SITE 2 AC9 5 HOH A 287 CRYST1 91.150 91.150 64.770 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010970 0.006330 0.000000 0.00000 SCALE2 0.000000 0.012670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015440 0.00000 HETATM 1 N MSE A 1 70.623 15.445 1.930 1.00 52.13 N HETATM 2 CA AMSE A 1 69.915 14.249 2.509 0.50 54.75 C HETATM 3 CA BMSE A 1 69.897 14.270 2.496 0.50 51.02 C HETATM 4 C MSE A 1 69.274 13.397 1.394 1.00 52.77 C HETATM 5 O MSE A 1 68.565 13.905 0.513 1.00 50.59 O HETATM 6 CB AMSE A 1 68.890 14.650 3.608 0.50 54.29 C HETATM 7 CB BMSE A 1 68.816 14.770 3.445 0.50 51.14 C HETATM 8 CG AMSE A 1 67.571 15.274 3.112 0.50 56.02 C HETATM 9 CG BMSE A 1 68.216 13.711 4.311 0.50 48.69 C HETATM 10 SE AMSE A 1 66.382 16.219 4.450 0.25 60.41 SE HETATM 11 SE BMSE A 1 66.800 14.472 5.397 0.50 46.00 SE HETATM 12 CE AMSE A 1 67.686 17.001 5.712 0.50 55.00 C HETATM 13 CE BMSE A 1 67.875 15.854 6.410 0.50 35.69 C