data_2ET1 # _entry.id 2ET1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ET1 RCSB RCSB035056 WWPDB D_1000035056 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1fi2 'Oxalate oxidase' unspecified PDB 2ET7 . unspecified PDB 2ETE . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ET1 _pdbx_database_status.recvd_initial_deposition_date 2005-10-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rose, R.-S.' 1 'Opaleye, O.' 2 'Woo, E.-J.' 3 'Pickersgill, R.W.' 4 # _citation.id primary _citation.title 'Structural and spectroscopic studies shed light on the mechanism of oxalate oxidase' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 6428 _citation.page_last 6433 _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16291738 _citation.pdbx_database_id_DOI 10.1074/jbc.M510256200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Opaleye, O.' 1 primary 'Rose, R.-S.' 2 primary 'Whittaker, M.M.' 3 primary 'Woo, E.-J.' 4 primary 'Whittaker, J.W.' 5 primary 'Pickersgill, R.W.' 6 # _cell.entry_id 2ET1 _cell.length_a 96.302 _cell.length_b 96.302 _cell.length_c 108.133 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ET1 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Oxalate oxidase 1' 21237.170 1 1.2.3.4 ? ? ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 3 non-polymer syn 'GLYOXYLIC ACID' 74.035 1 ? ? ? ? 4 water nat water 18.015 163 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Germin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGGS ; _entity_poly.pdbx_seq_one_letter_code_can ;TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ASP n 1 3 PRO n 1 4 ASP n 1 5 PRO n 1 6 LEU n 1 7 GLN n 1 8 ASP n 1 9 PHE n 1 10 CYS n 1 11 VAL n 1 12 ALA n 1 13 ASP n 1 14 LEU n 1 15 ASP n 1 16 GLY n 1 17 LYS n 1 18 ALA n 1 19 VAL n 1 20 SER n 1 21 VAL n 1 22 ASN n 1 23 GLY n 1 24 HIS n 1 25 THR n 1 26 CYS n 1 27 LYS n 1 28 PRO n 1 29 MET n 1 30 SER n 1 31 GLU n 1 32 ALA n 1 33 GLY n 1 34 ASP n 1 35 ASP n 1 36 PHE n 1 37 LEU n 1 38 PHE n 1 39 SER n 1 40 SER n 1 41 LYS n 1 42 LEU n 1 43 THR n 1 44 LYS n 1 45 ALA n 1 46 GLY n 1 47 ASN n 1 48 THR n 1 49 SER n 1 50 THR n 1 51 PRO n 1 52 ASN n 1 53 GLY n 1 54 SER n 1 55 ALA n 1 56 VAL n 1 57 THR n 1 58 GLU n 1 59 LEU n 1 60 ASP n 1 61 VAL n 1 62 ALA n 1 63 GLU n 1 64 TRP n 1 65 PRO n 1 66 GLY n 1 67 THR n 1 68 ASN n 1 69 THR n 1 70 LEU n 1 71 GLY n 1 72 VAL n 1 73 SER n 1 74 MET n 1 75 ASN n 1 76 ARG n 1 77 VAL n 1 78 ASP n 1 79 PHE n 1 80 ALA n 1 81 PRO n 1 82 GLY n 1 83 GLY n 1 84 THR n 1 85 ASN n 1 86 PRO n 1 87 PRO n 1 88 HIS n 1 89 ILE n 1 90 HIS n 1 91 PRO n 1 92 ARG n 1 93 ALA n 1 94 THR n 1 95 GLU n 1 96 ILE n 1 97 GLY n 1 98 MET n 1 99 VAL n 1 100 MET n 1 101 LYS n 1 102 GLY n 1 103 GLU n 1 104 LEU n 1 105 LEU n 1 106 VAL n 1 107 GLY n 1 108 ILE n 1 109 LEU n 1 110 GLY n 1 111 SER n 1 112 LEU n 1 113 ASP n 1 114 SER n 1 115 GLY n 1 116 ASN n 1 117 LYS n 1 118 LEU n 1 119 TYR n 1 120 SER n 1 121 ARG n 1 122 VAL n 1 123 VAL n 1 124 ARG n 1 125 ALA n 1 126 GLY n 1 127 GLU n 1 128 THR n 1 129 PHE n 1 130 VAL n 1 131 ILE n 1 132 PRO n 1 133 ARG n 1 134 GLY n 1 135 LEU n 1 136 MET n 1 137 HIS n 1 138 PHE n 1 139 GLN n 1 140 PHE n 1 141 ASN n 1 142 VAL n 1 143 GLY n 1 144 LYS n 1 145 THR n 1 146 GLU n 1 147 ALA n 1 148 TYR n 1 149 MET n 1 150 VAL n 1 151 VAL n 1 152 SER n 1 153 PHE n 1 154 ASN n 1 155 SER n 1 156 GLN n 1 157 ASN n 1 158 PRO n 1 159 GLY n 1 160 ILE n 1 161 VAL n 1 162 PHE n 1 163 VAL n 1 164 PRO n 1 165 LEU n 1 166 THR n 1 167 LEU n 1 168 PHE n 1 169 GLY n 1 170 SER n 1 171 ASP n 1 172 PRO n 1 173 PRO n 1 174 ILE n 1 175 PRO n 1 176 THR n 1 177 PRO n 1 178 VAL n 1 179 LEU n 1 180 THR n 1 181 LYS n 1 182 ALA n 1 183 LEU n 1 184 ARG n 1 185 VAL n 1 186 GLU n 1 187 ALA n 1 188 GLY n 1 189 VAL n 1 190 VAL n 1 191 GLU n 1 192 LEU n 1 193 LEU n 1 194 LYS n 1 195 SER n 1 196 LYS n 1 197 PHE n 1 198 ALA n 1 199 GLY n 1 200 GLY n 1 201 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Hordeum vulgare' _entity_src_nat.pdbx_ncbi_taxonomy_id 4513 _entity_src_nat.genus Hordeum _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OXO1_HORVU _struct_ref.pdbx_db_accession P45850 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGGS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ET1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 201 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P45850 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 201 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 201 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2ET1 _struct_ref_seq_dif.mon_id THR _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P45850 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 1 _struct_ref_seq_dif.details 'SEE REMARK 999' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLV non-polymer . 'GLYOXYLIC ACID' 'GLYOXALATE, GLYOXYLATE' 'C2 H2 O3' 74.035 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ET1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '2.3M ammonium sulfate, 5% 2-propanol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-02-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.87 # _reflns.entry_id 2ET1 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.60 _reflns.number_obs 24460 _reflns.number_all 25090 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.025 _reflns.pdbx_Rsym_value 0.025 _reflns.pdbx_netI_over_sigmaI 40 _reflns.B_iso_Wilson_estimate 8 _reflns.pdbx_redundancy 15 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.047 _reflns_shell.pdbx_Rsym_value 0.047 _reflns_shell.meanI_over_sigI_obs 26 _reflns_shell.pdbx_redundancy 9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2526 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ET1 _refine.ls_number_reflns_obs 23143 _refine.ls_number_reflns_all 25090 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 12.52 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs 97.79 _refine.ls_R_factor_obs 0.17809 _refine.ls_R_factor_all 0.18 _refine.ls_R_factor_R_work 0.1766 _refine.ls_R_factor_R_free 0.206 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1247 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 9.185 _refine.aniso_B[1][1] -0.09 _refine.aniso_B[2][2] -0.09 _refine.aniso_B[3][3] 0.14 _refine.aniso_B[1][2] -0.05 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'Oxalate oxidase (pdb entry 1fi2)' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.093 _refine.pdbx_overall_ESU_R_Free 0.091 _refine.overall_SU_ML 0.048 _refine.overall_SU_B 1.304 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1491 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 1660 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 12.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1530 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.391 1.980 ? 2082 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.492 5.000 ? 200 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.196 24.737 ? 57 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.815 15.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.489 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.105 0.200 ? 239 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1161 'X-RAY DIFFRACTION' ? r_nbd_refined 0.212 0.200 ? 532 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.298 0.200 ? 1035 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.093 0.200 ? 56 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.318 0.200 ? 99 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.153 0.200 ? 27 'X-RAY DIFFRACTION' ? r_mcbond_it 0.857 1.500 ? 1032 'X-RAY DIFFRACTION' ? r_mcangle_it 1.186 2.000 ? 1618 'X-RAY DIFFRACTION' ? r_scbond_it 2.106 3.000 ? 556 'X-RAY DIFFRACTION' ? r_scangle_it 3.118 4.500 ? 464 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.6 _refine_ls_shell.d_res_low 1.653 _refine_ls_shell.number_reflns_R_work 1658 _refine_ls_shell.R_factor_R_work 0.17 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.229 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ET1 _struct.title 'Oxalate oxidase in complex with substrate analogue glycolate' _struct.pdbx_descriptor 'Oxalate oxidase 1 (E.C.1.2.3.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ET1 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'Double stranded beta helix, Cupin, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 28 ? ALA A 32 ? PRO A 28 ALA A 32 5 ? 5 HELX_P HELX_P2 2 TRP A 64 ? ASN A 68 ? TRP A 64 ASN A 68 5 ? 5 HELX_P HELX_P3 3 SER A 111 ? GLY A 115 ? SER A 111 GLY A 115 5 ? 5 HELX_P HELX_P4 4 VAL A 163 ? SER A 170 ? VAL A 163 SER A 170 1 ? 8 HELX_P HELX_P5 5 PRO A 175 ? ARG A 184 ? PRO A 175 ARG A 184 1 ? 10 HELX_P HELX_P6 6 GLU A 186 ? LYS A 196 ? GLU A 186 LYS A 196 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 26 SG ? ? A CYS 10 A CYS 26 1_555 ? ? ? ? ? ? ? 2.049 ? metalc1 metalc ? ? B MN . MN ? ? ? 1_555 A HIS 88 NE2 ? ? A MN 202 A HIS 88 1_555 ? ? ? ? ? ? ? 2.371 ? metalc2 metalc ? ? B MN . MN ? ? ? 1_555 A HIS 90 NE2 ? ? A MN 202 A HIS 90 1_555 ? ? ? ? ? ? ? 2.235 ? metalc3 metalc ? ? B MN . MN ? ? ? 1_555 A GLU 95 OE1 ? ? A MN 202 A GLU 95 1_555 ? ? ? ? ? ? ? 2.167 ? metalc4 metalc ? ? B MN . MN ? ? ? 1_555 A HIS 137 NE2 ? ? A MN 202 A HIS 137 1_555 ? ? ? ? ? ? ? 2.314 ? metalc5 metalc ? ? B MN . MN ? ? ? 1_555 C GLV . O3 ? ? A MN 202 A GLV 203 1_555 ? ? ? ? ? ? ? 2.255 ? metalc6 metalc ? ? B MN . MN ? ? ? 1_555 D HOH . O ? ? A MN 202 A HOH 221 1_555 ? ? ? ? ? ? ? 2.264 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 171 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 171 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 172 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 172 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.56 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 54 ? LEU A 59 ? SER A 54 LEU A 59 A 2 SER A 73 ? PHE A 79 ? SER A 73 PHE A 79 A 3 ALA A 147 ? PHE A 153 ? ALA A 147 PHE A 153 A 4 GLU A 95 ? LYS A 101 ? GLU A 95 LYS A 101 A 5 THR A 128 ? ILE A 131 ? THR A 128 ILE A 131 B 1 LEU A 118 ? VAL A 123 ? LEU A 118 VAL A 123 B 2 LEU A 104 ? LEU A 109 ? LEU A 104 LEU A 109 B 3 HIS A 137 ? ASN A 141 ? HIS A 137 ASN A 141 B 4 THR A 84 ? ILE A 89 ? THR A 84 ILE A 89 B 5 VAL A 161 ? PHE A 162 ? VAL A 161 PHE A 162 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 57 ? N THR A 57 O ARG A 76 ? O ARG A 76 A 2 3 N PHE A 79 ? N PHE A 79 O ALA A 147 ? O ALA A 147 A 3 4 O SER A 152 ? O SER A 152 N ILE A 96 ? N ILE A 96 A 4 5 N GLU A 95 ? N GLU A 95 O ILE A 131 ? O ILE A 131 B 1 2 O VAL A 123 ? O VAL A 123 N LEU A 104 ? N LEU A 104 B 2 3 N LEU A 105 ? N LEU A 105 O PHE A 140 ? O PHE A 140 B 3 4 O HIS A 137 ? O HIS A 137 N HIS A 88 ? N HIS A 88 B 4 5 N ILE A 89 ? N ILE A 89 O VAL A 161 ? O VAL A 161 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MN A 202' AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE GLV A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 88 ? HIS A 88 . ? 1_555 ? 2 AC1 6 HIS A 90 ? HIS A 90 . ? 1_555 ? 3 AC1 6 GLU A 95 ? GLU A 95 . ? 1_555 ? 4 AC1 6 HIS A 137 ? HIS A 137 . ? 1_555 ? 5 AC1 6 GLV C . ? GLV A 203 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 221 . ? 1_555 ? 7 AC2 10 ASN A 75 ? ASN A 75 . ? 1_555 ? 8 AC2 10 VAL A 77 ? VAL A 77 . ? 1_555 ? 9 AC2 10 ASN A 85 ? ASN A 85 . ? 1_555 ? 10 AC2 10 HIS A 88 ? HIS A 88 . ? 1_555 ? 11 AC2 10 HIS A 90 ? HIS A 90 . ? 1_555 ? 12 AC2 10 GLU A 95 ? GLU A 95 . ? 1_555 ? 13 AC2 10 MET A 149 ? MET A 149 . ? 1_555 ? 14 AC2 10 MN B . ? MN A 202 . ? 1_555 ? 15 AC2 10 HOH D . ? HOH A 221 . ? 1_555 ? 16 AC2 10 HOH D . ? HOH A 333 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ET1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ET1 _atom_sites.fract_transf_matrix[1][1] 0.010384 _atom_sites.fract_transf_matrix[1][2] 0.005995 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011990 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009248 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 MET 100 100 100 MET MET A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 TYR 119 119 119 TYR TYR A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 MET 136 136 136 MET MET A . n A 1 137 HIS 137 137 137 HIS HIS A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 MET 149 149 149 MET MET A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 GLN 156 156 156 GLN GLN A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 PHE 162 162 162 PHE PHE A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 THR 166 166 166 THR THR A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 ASP 171 171 171 ASP ASP A . n A 1 172 PRO 172 172 172 PRO PRO A . n A 1 173 PRO 173 173 173 PRO PRO A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 THR 176 176 176 THR THR A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 THR 180 180 180 THR THR A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 ARG 184 184 184 ARG ARG A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 SER 195 195 195 SER SER A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 SER 201 201 201 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 202 202 MN MN A . C 3 GLV 1 203 171 GLV GLV A . D 4 HOH 1 204 1 HOH HOH A . D 4 HOH 2 205 2 HOH HOH A . D 4 HOH 3 206 3 HOH HOH A . D 4 HOH 4 207 4 HOH HOH A . D 4 HOH 5 208 5 HOH HOH A . D 4 HOH 6 209 6 HOH HOH A . D 4 HOH 7 210 7 HOH HOH A . D 4 HOH 8 211 8 HOH HOH A . D 4 HOH 9 212 9 HOH HOH A . D 4 HOH 10 213 10 HOH HOH A . D 4 HOH 11 214 11 HOH HOH A . D 4 HOH 12 215 12 HOH HOH A . D 4 HOH 13 216 13 HOH HOH A . D 4 HOH 14 217 14 HOH HOH A . D 4 HOH 15 218 15 HOH HOH A . D 4 HOH 16 219 16 HOH HOH A . D 4 HOH 17 220 17 HOH HOH A . D 4 HOH 18 221 18 HOH HOH A . D 4 HOH 19 222 19 HOH HOH A . D 4 HOH 20 223 20 HOH HOH A . D 4 HOH 21 224 21 HOH HOH A . D 4 HOH 22 225 22 HOH HOH A . D 4 HOH 23 226 23 HOH HOH A . D 4 HOH 24 227 24 HOH HOH A . D 4 HOH 25 228 25 HOH HOH A . D 4 HOH 26 229 26 HOH HOH A . D 4 HOH 27 230 27 HOH HOH A . D 4 HOH 28 231 28 HOH HOH A . D 4 HOH 29 232 29 HOH HOH A . D 4 HOH 30 233 30 HOH HOH A . D 4 HOH 31 234 31 HOH HOH A . D 4 HOH 32 235 32 HOH HOH A . D 4 HOH 33 236 33 HOH HOH A . D 4 HOH 34 237 34 HOH HOH A . D 4 HOH 35 238 35 HOH HOH A . D 4 HOH 36 239 36 HOH HOH A . D 4 HOH 37 240 37 HOH HOH A . D 4 HOH 38 241 38 HOH HOH A . D 4 HOH 39 242 39 HOH HOH A . D 4 HOH 40 243 40 HOH HOH A . D 4 HOH 41 244 41 HOH HOH A . D 4 HOH 42 245 42 HOH HOH A . D 4 HOH 43 246 43 HOH HOH A . D 4 HOH 44 247 44 HOH HOH A . D 4 HOH 45 248 45 HOH HOH A . D 4 HOH 46 249 46 HOH HOH A . D 4 HOH 47 250 47 HOH HOH A . D 4 HOH 48 251 48 HOH HOH A . D 4 HOH 49 252 49 HOH HOH A . D 4 HOH 50 253 50 HOH HOH A . D 4 HOH 51 254 51 HOH HOH A . D 4 HOH 52 255 52 HOH HOH A . D 4 HOH 53 256 53 HOH HOH A . D 4 HOH 54 257 54 HOH HOH A . D 4 HOH 55 258 55 HOH HOH A . D 4 HOH 56 259 56 HOH HOH A . D 4 HOH 57 260 57 HOH HOH A . D 4 HOH 58 261 58 HOH HOH A . D 4 HOH 59 262 59 HOH HOH A . D 4 HOH 60 263 60 HOH HOH A . D 4 HOH 61 264 61 HOH HOH A . D 4 HOH 62 265 62 HOH HOH A . D 4 HOH 63 266 63 HOH HOH A . D 4 HOH 64 267 64 HOH HOH A . D 4 HOH 65 268 65 HOH HOH A . D 4 HOH 66 269 66 HOH HOH A . D 4 HOH 67 270 67 HOH HOH A . D 4 HOH 68 271 68 HOH HOH A . D 4 HOH 69 272 69 HOH HOH A . D 4 HOH 70 273 70 HOH HOH A . D 4 HOH 71 274 71 HOH HOH A . D 4 HOH 72 275 72 HOH HOH A . D 4 HOH 73 276 73 HOH HOH A . D 4 HOH 74 277 74 HOH HOH A . D 4 HOH 75 278 75 HOH HOH A . D 4 HOH 76 279 76 HOH HOH A . D 4 HOH 77 280 77 HOH HOH A . D 4 HOH 78 281 78 HOH HOH A . D 4 HOH 79 282 79 HOH HOH A . D 4 HOH 80 283 80 HOH HOH A . D 4 HOH 81 284 81 HOH HOH A . D 4 HOH 82 285 82 HOH HOH A . D 4 HOH 83 286 83 HOH HOH A . D 4 HOH 84 287 84 HOH HOH A . D 4 HOH 85 288 85 HOH HOH A . D 4 HOH 86 289 86 HOH HOH A . D 4 HOH 87 290 87 HOH HOH A . D 4 HOH 88 291 88 HOH HOH A . D 4 HOH 89 292 89 HOH HOH A . D 4 HOH 90 293 90 HOH HOH A . D 4 HOH 91 294 91 HOH HOH A . D 4 HOH 92 295 92 HOH HOH A . D 4 HOH 93 296 93 HOH HOH A . D 4 HOH 94 297 94 HOH HOH A . D 4 HOH 95 298 95 HOH HOH A . D 4 HOH 96 299 96 HOH HOH A . D 4 HOH 97 300 97 HOH HOH A . D 4 HOH 98 301 98 HOH HOH A . D 4 HOH 99 302 99 HOH HOH A . D 4 HOH 100 303 100 HOH HOH A . D 4 HOH 101 304 101 HOH HOH A . D 4 HOH 102 305 102 HOH HOH A . D 4 HOH 103 306 103 HOH HOH A . D 4 HOH 104 307 104 HOH HOH A . D 4 HOH 105 308 105 HOH HOH A . D 4 HOH 106 309 106 HOH HOH A . D 4 HOH 107 310 107 HOH HOH A . D 4 HOH 108 311 108 HOH HOH A . D 4 HOH 109 312 109 HOH HOH A . D 4 HOH 110 313 110 HOH HOH A . D 4 HOH 111 314 111 HOH HOH A . D 4 HOH 112 315 112 HOH HOH A . D 4 HOH 113 316 113 HOH HOH A . D 4 HOH 114 317 114 HOH HOH A . D 4 HOH 115 318 115 HOH HOH A . D 4 HOH 116 319 116 HOH HOH A . D 4 HOH 117 320 117 HOH HOH A . D 4 HOH 118 321 118 HOH HOH A . D 4 HOH 119 322 119 HOH HOH A . D 4 HOH 120 323 120 HOH HOH A . D 4 HOH 121 324 121 HOH HOH A . D 4 HOH 122 325 122 HOH HOH A . D 4 HOH 123 326 123 HOH HOH A . D 4 HOH 124 327 124 HOH HOH A . D 4 HOH 125 328 125 HOH HOH A . D 4 HOH 126 329 126 HOH HOH A . D 4 HOH 127 330 127 HOH HOH A . D 4 HOH 128 331 128 HOH HOH A . D 4 HOH 129 332 129 HOH HOH A . D 4 HOH 130 333 130 HOH HOH A . D 4 HOH 131 334 131 HOH HOH A . D 4 HOH 132 335 132 HOH HOH A . D 4 HOH 133 336 133 HOH HOH A . D 4 HOH 134 337 134 HOH HOH A . D 4 HOH 135 338 135 HOH HOH A . D 4 HOH 136 339 136 HOH HOH A . D 4 HOH 137 340 137 HOH HOH A . D 4 HOH 138 341 138 HOH HOH A . D 4 HOH 139 342 139 HOH HOH A . D 4 HOH 140 343 140 HOH HOH A . D 4 HOH 141 344 141 HOH HOH A . D 4 HOH 142 345 142 HOH HOH A . D 4 HOH 143 346 143 HOH HOH A . D 4 HOH 144 347 144 HOH HOH A . D 4 HOH 145 348 145 HOH HOH A . D 4 HOH 146 349 146 HOH HOH A . D 4 HOH 147 350 147 HOH HOH A . D 4 HOH 148 351 148 HOH HOH A . D 4 HOH 149 352 149 HOH HOH A . D 4 HOH 150 353 150 HOH HOH A . D 4 HOH 151 354 151 HOH HOH A . D 4 HOH 152 355 152 HOH HOH A . D 4 HOH 153 356 153 HOH HOH A . D 4 HOH 154 357 154 HOH HOH A . D 4 HOH 155 358 155 HOH HOH A . D 4 HOH 156 359 156 HOH HOH A . D 4 HOH 157 360 157 HOH HOH A . D 4 HOH 158 361 158 HOH HOH A . D 4 HOH 159 362 159 HOH HOH A . D 4 HOH 160 363 160 HOH HOH A . D 4 HOH 161 364 161 HOH HOH A . D 4 HOH 162 365 162 HOH HOH A . D 4 HOH 163 366 163 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 35330 ? 1 MORE -278 ? 1 'SSA (A^2)' 36950 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 108.1330000000 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 108.1330000000 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 108.1330000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 88 ? A HIS 88 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 NE2 ? A HIS 90 ? A HIS 90 ? 1_555 96.4 ? 2 NE2 ? A HIS 88 ? A HIS 88 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 OE1 ? A GLU 95 ? A GLU 95 ? 1_555 174.1 ? 3 NE2 ? A HIS 90 ? A HIS 90 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 OE1 ? A GLU 95 ? A GLU 95 ? 1_555 84.8 ? 4 NE2 ? A HIS 88 ? A HIS 88 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 NE2 ? A HIS 137 ? A HIS 137 ? 1_555 79.8 ? 5 NE2 ? A HIS 90 ? A HIS 90 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 NE2 ? A HIS 137 ? A HIS 137 ? 1_555 96.3 ? 6 OE1 ? A GLU 95 ? A GLU 95 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 NE2 ? A HIS 137 ? A HIS 137 ? 1_555 94.3 ? 7 NE2 ? A HIS 88 ? A HIS 88 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O3 ? C GLV . ? A GLV 203 ? 1_555 90.6 ? 8 NE2 ? A HIS 90 ? A HIS 90 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O3 ? C GLV . ? A GLV 203 ? 1_555 83.1 ? 9 OE1 ? A GLU 95 ? A GLU 95 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O3 ? C GLV . ? A GLV 203 ? 1_555 95.3 ? 10 NE2 ? A HIS 137 ? A HIS 137 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O3 ? C GLV . ? A GLV 203 ? 1_555 170.3 ? 11 NE2 ? A HIS 88 ? A HIS 88 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 93.3 ? 12 NE2 ? A HIS 90 ? A HIS 90 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 165.5 ? 13 OE1 ? A GLU 95 ? A GLU 95 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 86.7 ? 14 NE2 ? A HIS 137 ? A HIS 137 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 96.1 ? 15 O3 ? C GLV . ? A GLV 203 ? 1_555 MN ? B MN . ? A MN 202 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 86.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-22 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 ADSC 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE AUTHOR STATES THAT THE ELECTRON DENSITY SUGGESTS THE FIRST AMINO ACID IS THR RATHER THAN SER. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 10 ? ? -160.87 75.30 2 1 THR A 69 ? ? 75.97 -8.92 3 1 ASN A 154 ? ? -85.54 39.88 4 1 ASN A 157 ? ? -154.80 74.83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 'GLYOXYLIC ACID' GLV 4 water HOH #