HEADER MEMBRANE PROTEIN 27-OCT-05 2ETD TITLE CRYSTAL STRUCTURE OF A LEMA PROTEIN (TM0961) FROM THERMOTOGA MARITIMA TITLE 2 MSB8 AT 2.28 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEMA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0961; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: HK100 KEYWDS BROMODOMAIN-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2ETD 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 2ETD 1 REMARK REVDAT 4 13-JUL-11 2ETD 1 VERSN REVDAT 3 23-MAR-11 2ETD 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2ETD 1 VERSN REVDAT 1 15-NOV-05 2ETD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF LEMA PROTEIN (TM0961) FROM THERMOTOGA JRNL TITL 2 MARITIMA AT 2.28 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 7717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 375 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1106 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.938 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1119 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1023 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1505 ; 1.362 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2384 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 139 ; 5.250 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;31.773 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 208 ;15.049 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;24.674 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 168 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1246 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 210 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 259 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 927 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 540 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 656 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 41 ; 0.199 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 18 ; 0.386 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 735 ; 2.243 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 284 ; 0.562 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1116 ; 3.354 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 449 ; 5.965 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 389 ; 8.617 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1683 28.8656 53.6444 REMARK 3 T TENSOR REMARK 3 T11: -0.1623 T22: -0.2821 REMARK 3 T33: -0.1240 T12: -0.0042 REMARK 3 T13: -0.0423 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.4018 L22: 1.0196 REMARK 3 L33: 6.6168 L12: 0.1682 REMARK 3 L13: -2.1498 L23: -0.8106 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.0457 S13: 0.2954 REMARK 3 S21: 0.0509 S22: 0.0258 S23: -0.0354 REMARK 3 S31: -0.3101 S32: 0.1317 S33: -0.0596 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION REMARK 3 DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE REMARK 3 MSE REMARK 3 RESIDUES WAS REDUCED TO 0.7 TO ACCOUNT FOR THE REDUCED SCATTERING REMARK 3 POWER REMARK 3 DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 3. THE STRUCTURE WAS NOT MODELED BETWEEN 162-171 BECAUSE THE REMARK 3 ELECTRON DENSITY REMARK 3 IN THIS REGION IS DISORDERED. REMARK 3 4. THIS PROTEIN IS REDUCTIVELY METHYLATED. HOWEVER, DENSITY FOR REMARK 3 MOST OF THE REMARK 3 METHYL GROUPS ARE NOT OBSERVED, MAYBE DUE TO FLEXIBILITY OR REMARK 3 LIMITED RESOLUTION. REMARK 4 REMARK 4 2ETD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000035068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0163, 0.9797, 0.9796 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8126 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4NO3, 20.0% PEG-3350, NO BUFFER REMARK 280 PH 6.3 , VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.22700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.62950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.22700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.62950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.22700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.62950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.22700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.62950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS REMARK 300 A BIOLOGICALLY SIGNIFICANT OLIGIMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 MLY A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 PHE A 162 REMARK 465 PRO A 163 REMARK 465 GLY A 164 REMARK 465 VAL A 165 REMARK 465 ILE A 166 REMARK 465 PHE A 167 REMARK 465 ALA A 168 REMARK 465 MLY A 169 REMARK 465 MSE A 170 REMARK 465 PHE A 171 REMARK 465 GLY A 184 REMARK 465 ALA A 185 REMARK 465 GLU A 186 REMARK 465 GLU A 187 REMARK 465 VAL A 188 REMARK 465 PRO A 189 REMARK 465 GLU A 190 REMARK 465 VAL A 191 REMARK 465 MLY A 192 REMARK 465 PHE A 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 36 CG1 CG2 REMARK 470 GLN A 43 CD OE1 NE2 REMARK 470 MLY A 45 CH1 CH2 REMARK 470 GLN A 48 OE1 REMARK 470 GLU A 65 CD OE1 OE2 REMARK 470 MLY A 68 CH1 CH2 REMARK 470 MLY A 75 CH1 CH2 REMARK 470 GLU A 76 OE1 OE2 REMARK 470 MLY A 87 CH1 CH2 REMARK 470 MLY A 92 CH1 CH2 REMARK 470 MLY A 122 CH1 CH2 REMARK 470 MLY A 153 CH1 CH2 REMARK 470 MLY A 154 CH1 CH2 REMARK 470 MLY A 160 CH1 CH2 REMARK 470 MLY A 161 CH1 CH2 REMARK 470 MLY A 176 CH1 CH2 REMARK 470 MLY A 182 CD CE NZ CH1 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 71 65.88 -150.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358514 RELATED DB: TARGETDB DBREF 2ETD A 35 193 UNP Q9X056 Q9X056_THEMA 35 193 SEQADV 2ETD MSE A -11 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD GLY A -10 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD SER A -9 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD ASP A -8 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD MLY A -7 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD ILE A -6 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD HIS A -5 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD HIS A -4 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD HIS A -3 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD HIS A -2 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD HIS A -1 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD HIS A 0 UNP Q9X056 EXPRESSION TAG SEQADV 2ETD MLY A 45 UNP Q9X056 LYS 45 MODIFIED RESIDUE SEQADV 2ETD MLY A 68 UNP Q9X056 LYS 68 MODIFIED RESIDUE SEQADV 2ETD MLY A 75 UNP Q9X056 LYS 75 MODIFIED RESIDUE SEQADV 2ETD MLY A 87 UNP Q9X056 LYS 87 MODIFIED RESIDUE SEQADV 2ETD MLY A 92 UNP Q9X056 LYS 92 MODIFIED RESIDUE SEQADV 2ETD MLY A 122 UNP Q9X056 LYS 122 MODIFIED RESIDUE SEQADV 2ETD MSE A 131 UNP Q9X056 MET 131 MODIFIED RESIDUE SEQADV 2ETD MLY A 153 UNP Q9X056 LYS 153 MODIFIED RESIDUE SEQADV 2ETD MLY A 154 UNP Q9X056 LYS 154 MODIFIED RESIDUE SEQADV 2ETD MLY A 160 UNP Q9X056 LYS 160 MODIFIED RESIDUE SEQADV 2ETD MLY A 161 UNP Q9X056 LYS 161 MODIFIED RESIDUE SEQADV 2ETD MLY A 169 UNP Q9X056 LYS 169 MODIFIED RESIDUE SEQADV 2ETD MSE A 170 UNP Q9X056 MET 170 MODIFIED RESIDUE SEQADV 2ETD MLY A 176 UNP Q9X056 LYS 176 MODIFIED RESIDUE SEQADV 2ETD MLY A 182 UNP Q9X056 LYS 182 MODIFIED RESIDUE SEQADV 2ETD MLY A 192 UNP Q9X056 LYS 192 MODIFIED RESIDUE SEQRES 1 A 171 MSE GLY SER ASP MLY ILE HIS HIS HIS HIS HIS HIS LEU SEQRES 2 A 171 VAL SER LEU GLU GLN GLU VAL GLN GLU MLY TYR SER GLN SEQRES 3 A 171 ILE GLN ASN GLN LEU GLN ARG ARG ALA ASP LEU ILE PRO SEQRES 4 A 171 ASN LEU VAL GLU THR VAL MLY GLY TYR ALA ALA HIS GLU SEQRES 5 A 171 MLY GLU ILE LEU GLU GLU ILE ALA ASN ALA ARG ALA MLY SEQRES 6 A 171 LEU ILE GLY ALA MLY THR PRO GLN GLU SER ALA GLN ALA SEQRES 7 A 171 ASP ALA GLU LEU SER SER ALA LEU SER ARG LEU LEU ALA SEQRES 8 A 171 ILE ALA GLU ASN TYR PRO ASN LEU MLY ALA ASP ALA ASN SEQRES 9 A 171 PHE ARG GLN LEU MSE ASP GLU LEU ALA GLY THR GLU ASN SEQRES 10 A 171 ARG ILE ALA VAL ALA ARG ARG ASP TYR ASN GLU ALA VAL SEQRES 11 A 171 MLY MLY TYR ASN THR ALA ILE MLY MLY PHE PRO GLY VAL SEQRES 12 A 171 ILE PHE ALA MLY MSE PHE GLY PHE GLU GLU MLY GLN TYR SEQRES 13 A 171 PHE GLU ALA MLY PRO GLY ALA GLU GLU VAL PRO GLU VAL SEQRES 14 A 171 MLY PHE MODRES 2ETD MLY A 45 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 68 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 75 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 87 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 92 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 122 LYS N-DIMETHYL-LYSINE MODRES 2ETD MSE A 131 MET SELENOMETHIONINE MODRES 2ETD MLY A 153 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 154 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 160 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 161 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 176 LYS N-DIMETHYL-LYSINE MODRES 2ETD MLY A 182 LYS N-DIMETHYL-LYSINE HET MLY A 45 9 HET MLY A 68 9 HET MLY A 75 9 HET MLY A 87 9 HET MLY A 92 9 HET MLY A 122 9 HET MSE A 131 8 HET MLY A 153 9 HET MLY A 154 9 HET MLY A 160 9 HET MLY A 161 9 HET MLY A 176 9 HET MLY A 182 6 HET CL A 1 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MLY 12(C8 H18 N2 O2) FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 CL CL 1- FORMUL 3 HOH *62(H2 O) HELIX 1 1 HIS A -1 ALA A 71 1 39 HELIX 2 2 GLU A 74 ALA A 91 1 18 HELIX 3 3 THR A 93 GLU A 116 1 24 HELIX 4 4 TYR A 118 ASP A 124 1 7 HELIX 5 5 ASP A 124 MLY A 160 1 37 LINK C GLU A 44 N MLY A 45 1555 1555 1.33 LINK C MLY A 45 N TYR A 46 1555 1555 1.32 LINK C VAL A 67 N MLY A 68 1555 1555 1.33 LINK C MLY A 68 N GLY A 69 1555 1555 1.34 LINK C GLU A 74 N MLY A 75 1555 1555 1.33 LINK C MLY A 75 N GLU A 76 1555 1555 1.32 LINK C ALA A 86 N MLY A 87 1555 1555 1.34 LINK C MLY A 87 N LEU A 88 1555 1555 1.32 LINK C ALA A 91 N MLY A 92 1555 1555 1.33 LINK C MLY A 92 N THR A 93 1555 1555 1.32 LINK C LEU A 121 N MLY A 122 1555 1555 1.33 LINK C MLY A 122 N ALA A 123 1555 1555 1.33 LINK C LEU A 130 N MSE A 131 1555 1555 1.35 LINK C MSE A 131 N ASP A 132 1555 1555 1.34 LINK C VAL A 152 N MLY A 153 1555 1555 1.34 LINK C MLY A 153 N MLY A 154 1555 1555 1.33 LINK C MLY A 154 N TYR A 155 1555 1555 1.33 LINK C ILE A 159 N MLY A 160 1555 1555 1.34 LINK C MLY A 160 N MLY A 161 1555 1555 1.34 LINK C GLU A 175 N MLY A 176 1555 1555 1.32 LINK C MLY A 176 N GLN A 177 1555 1555 1.33 LINK C ALA A 181 N MLY A 182 1555 1555 1.33 LINK C MLY A 182 N PRO A 183 1555 1555 1.34 SITE 1 AC1 2 ARG A 56 LEU A 108 CRYST1 80.454 85.259 53.397 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012430 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018730 0.00000