data_2ETS # _entry.id 2ETS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ETS pdb_00002ets 10.2210/pdb2ets/pdb RCSB RCSB035082 ? ? WWPDB D_1000035082 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 358600 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2ETS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-10-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold.' _citation.journal_abbrev Proteins _citation.journal_volume 71 _citation.page_first 1589 _citation.page_last 1596 _citation.year 2008 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18324683 _citation.pdbx_database_id_DOI 10.1002/prot.22020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kozbial, P.' 1 ? primary 'Xu, Q.' 2 ? primary 'Chiu, H.J.' 3 ? primary 'McMullan, D.' 4 ? primary 'Krishna, S.S.' 5 ? primary 'Miller, M.D.' 6 ? primary 'Abdubek, P.' 7 ? primary 'Acosta, C.' 8 ? primary 'Astakhova, T.' 9 ? primary 'Axelrod, H.L.' 10 ? primary 'Carlton, D.' 11 ? primary 'Clayton, T.' 12 ? primary 'Deller, M.' 13 ? primary 'Duan, L.' 14 ? primary 'Elias, Y.' 15 ? primary 'Elsliger, M.A.' 16 ? primary 'Feuerhelm, J.' 17 ? primary 'Grzechnik, S.K.' 18 ? primary 'Hale, J.' 19 ? primary 'Han, G.W.' 20 ? primary 'Jaroszewski, L.' 21 ? primary 'Jin, K.K.' 22 ? primary 'Klock, H.E.' 23 ? primary 'Knuth, M.W.' 24 ? primary 'Koesema, E.' 25 ? primary 'Kumar, A.' 26 ? primary 'Marciano, D.' 27 ? primary 'Morse, A.T.' 28 ? primary 'Murphy, K.D.' 29 ? primary 'Nigoghossian, E.' 30 ? primary 'Okach, L.' 31 ? primary 'Oommachen, S.' 32 ? primary 'Reyes, R.' 33 ? primary 'Rife, C.L.' 34 ? primary 'Spraggon, G.' 35 ? primary 'Trout, C.V.' 36 ? primary 'van den Bedem, H.' 37 ? primary 'Weekes, D.' 38 ? primary 'White, A.' 39 ? primary 'Wolf, G.' 40 ? primary 'Zubieta, C.' 41 ? primary 'Hodgson, K.O.' 42 ? primary 'Wooley, J.' 43 ? primary 'Deacon, A.M.' 44 ? primary 'Godzik, A.' 45 ? primary 'Lesley, S.A.' 46 ? primary 'Wilson, I.A.' 47 ? # _cell.length_a 93.473 _cell.length_b 93.473 _cell.length_c 101.164 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2ETS _cell.pdbx_unique_axis ? _cell.Z_PDB 18 # _symmetry.Int_Tables_number 155 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.entry_id 2ETS _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 15462.802 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 4 water nat water 18.015 55 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)NDLVESLIYEVNN(MSE)QQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLHREFI IEVPY(MSE)NSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDGVTKEGTDG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMNDLVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVPYMNSRKFE LLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDGVTKEGTDG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 358600 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 ASN n 1 15 ASP n 1 16 LEU n 1 17 VAL n 1 18 GLU n 1 19 SER n 1 20 LEU n 1 21 ILE n 1 22 TYR n 1 23 GLU n 1 24 VAL n 1 25 ASN n 1 26 ASN n 1 27 MSE n 1 28 GLN n 1 29 GLN n 1 30 ASN n 1 31 PHE n 1 32 GLU n 1 33 ASN n 1 34 VAL n 1 35 LYS n 1 36 SER n 1 37 GLN n 1 38 GLN n 1 39 GLN n 1 40 ASP n 1 41 HIS n 1 42 ASP n 1 43 PHE n 1 44 TYR n 1 45 GLN n 1 46 THR n 1 47 VAL n 1 48 LYS n 1 49 PRO n 1 50 TYR n 1 51 THR n 1 52 GLU n 1 53 HIS n 1 54 ILE n 1 55 ASP n 1 56 SER n 1 57 ILE n 1 58 LEU n 1 59 ASN n 1 60 GLU n 1 61 ILE n 1 62 LYS n 1 63 LEU n 1 64 HIS n 1 65 ARG n 1 66 GLU n 1 67 PHE n 1 68 ILE n 1 69 ILE n 1 70 GLU n 1 71 VAL n 1 72 PRO n 1 73 TYR n 1 74 MSE n 1 75 ASN n 1 76 SER n 1 77 ARG n 1 78 LYS n 1 79 PHE n 1 80 GLU n 1 81 LEU n 1 82 LEU n 1 83 ILE n 1 84 ALA n 1 85 ASN n 1 86 ILE n 1 87 GLU n 1 88 GLN n 1 89 LEU n 1 90 SER n 1 91 VAL n 1 92 GLU n 1 93 CYS n 1 94 HIS n 1 95 PHE n 1 96 LYS n 1 97 ARG n 1 98 THR n 1 99 SER n 1 100 ARG n 1 101 LYS n 1 102 LEU n 1 103 PHE n 1 104 ILE n 1 105 GLU n 1 106 LYS n 1 107 LEU n 1 108 LYS n 1 109 SER n 1 110 VAL n 1 111 GLN n 1 112 TYR n 1 113 ASP n 1 114 LEU n 1 115 GLN n 1 116 ASN n 1 117 ILE n 1 118 LEU n 1 119 ASP n 1 120 GLY n 1 121 VAL n 1 122 THR n 1 123 LYS n 1 124 GLU n 1 125 GLY n 1 126 THR n 1 127 ASP n 1 128 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene np_646154.1 _entity_src_gen.gene_src_species 'Staphylococcus aureus' _entity_src_gen.gene_src_strain MW2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 196620 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8NWP7_STAAW _struct_ref.pdbx_db_accession Q8NWP7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNDLVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSMLNEIKLHREFIIEVPYMNSRKFELLIANIEQLSVE CHFKRTSRKLFIEKLKSVQYDLQNILDGVTKEGTDG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ETS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8NWP7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 116 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ETS MSE A 1 ? UNP Q8NWP7 ? ? 'expression tag' -11 1 1 2ETS GLY A 2 ? UNP Q8NWP7 ? ? 'expression tag' -10 2 1 2ETS SER A 3 ? UNP Q8NWP7 ? ? 'expression tag' -9 3 1 2ETS ASP A 4 ? UNP Q8NWP7 ? ? 'expression tag' -8 4 1 2ETS LYS A 5 ? UNP Q8NWP7 ? ? 'expression tag' -7 5 1 2ETS ILE A 6 ? UNP Q8NWP7 ? ? 'expression tag' -6 6 1 2ETS HIS A 7 ? UNP Q8NWP7 ? ? 'expression tag' -5 7 1 2ETS HIS A 8 ? UNP Q8NWP7 ? ? 'expression tag' -4 8 1 2ETS HIS A 9 ? UNP Q8NWP7 ? ? 'expression tag' -3 9 1 2ETS HIS A 10 ? UNP Q8NWP7 ? ? 'expression tag' -2 10 1 2ETS HIS A 11 ? UNP Q8NWP7 ? ? 'expression tag' -1 11 1 2ETS HIS A 12 ? UNP Q8NWP7 ? ? 'expression tag' 0 12 1 2ETS MSE A 13 ? UNP Q8NWP7 MET 1 'modified residue' 1 13 1 2ETS MSE A 27 ? UNP Q8NWP7 MET 15 'modified residue' 15 14 1 2ETS ILE A 57 ? UNP Q8NWP7 MET 45 'SEE REMARK 999' 45 15 1 2ETS MSE A 74 ? UNP Q8NWP7 MET 62 'modified residue' 62 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2ETS # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 58.50 _exptl_crystal.density_Matthews 2.99 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP, NANODROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M MgCl2, 2.5M NaCl, 0.1M Tris, pH 7.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors. K-B geometry' _diffrn_detector.pdbx_collection_date 2005-08-03 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'DOUBLE CRYSTAL SI (111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97942 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97942 _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 2ETS _reflns.d_resolution_low 29.29 _reflns.d_resolution_high 2.25 _reflns.number_obs 8245 _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rmerge_I_obs 0.13 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy 14.900 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 3.900 _reflns.pdbx_Rsym_value 0.13 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_all _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.31 2.25 596 100.000 0.976 ? 15.300 ? 0.700 0.976 ? ? ? 1 1 2.37 2.31 589 100.000 0.756 ? 15.200 ? 1.000 0.756 ? ? ? 2 1 2.44 2.37 578 100.000 0.57 ? 15.300 ? 1.300 0.57 ? ? ? 3 1 2.52 2.44 546 100.000 0.507 ? 15.300 ? 1.500 0.507 ? ? ? 4 1 2.60 2.52 544 100.000 0.407 ? 15.200 ? 1.800 0.407 ? ? ? 5 1 2.69 2.60 518 100.000 0.359 ? 15.200 ? 1.000 0.359 ? ? ? 6 1 2.79 2.69 497 100.000 0.293 ? 15.300 ? 2.500 0.293 ? ? ? 7 1 2.90 2.79 501 100.000 0.224 ? 15.100 ? 3.200 0.224 ? ? ? 8 1 3.03 2.90 455 100.000 0.188 ? 15.300 ? 3.800 0.188 ? ? ? 9 1 3.18 3.03 454 100.000 0.154 ? 15.200 ? 4.600 0.154 ? ? ? 10 1 3.35 3.18 421 100.000 0.128 ? 15.000 ? 5.200 0.128 ? ? ? 11 1 3.56 3.35 395 100.000 0.107 ? 14.900 ? 6.100 0.107 ? ? ? 12 1 3.80 3.56 377 100.000 0.099 ? 14.900 ? 6.300 0.099 ? ? ? 13 1 4.11 3.80 359 100.000 0.096 ? 14.600 ? 6.800 0.096 ? ? ? 14 1 4.50 4.11 332 100.000 0.084 ? 14.300 ? 7.400 0.084 ? ? ? 15 1 5.03 4.50 297 100.000 0.081 ? 14.400 ? 7.500 0.081 ? ? ? 16 1 5.81 5.03 274 100.000 0.089 ? 14.400 ? 6.500 0.089 ? ? ? 17 1 7.12 5.81 227 100.000 0.094 ? 14.000 ? 6.800 0.094 ? ? ? 18 1 10.06 7.12 178 100.000 0.079 ? 13.500 ? 7.200 0.079 ? ? ? 19 1 29.29 10.06 107 96.900 0.079 ? 11.700 ? 7.000 0.079 ? ? ? 20 1 # _refine.ls_d_res_high 2.250 _refine.ls_d_res_low 29.29 _refine.ls_percent_reflns_obs 99.920 _refine.ls_number_reflns_obs 7863 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.177 _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free 0.217 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 382 _refine.B_iso_mean 49.769 _refine.aniso_B[1][1] -1.340 _refine.aniso_B[2][2] -1.340 _refine.aniso_B[3][3] 2.010 _refine.aniso_B[1][2] -0.670 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.pdbx_overall_ESU_R 0.207 _refine.pdbx_overall_ESU_R_Free 0.179 _refine.overall_SU_ML 0.138 _refine.overall_SU_B 10.573 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct SAD _refine.entry_id 2ETS _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ;1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2). POOR DEFINED DENSITY A -4 TO A -1. 3). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.7 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4). THE ARG 85 SIDE CHAIN IS LOCATED ON THE 2-FOLD AXIS AND IS DISORDERED. ARG 85 WITHOUT SIDE CHAIN BEYOND BETA CARBON IS MODELED. 5). THE CHLORIDE AND PHOSPHATE IONS ARE TENATIVELY MODELLED ACCORDING ELECTRON DENSITY. ; _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 949 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1012 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 29.29 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 977 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 854 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1320 1.357 1.940 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1997 0.804 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 116 6.070 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 54 36.348 25.741 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 182 16.083 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 3 9.441 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 146 0.069 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1076 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 187 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 249 0.229 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 834 0.174 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 479 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 491 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 39 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 5 0.205 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 21 0.245 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.274 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 632 2.202 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 232 0.530 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 938 3.196 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 431 6.736 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 381 8.205 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.251 _refine_ls_shell.d_res_low 2.310 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.830 _refine_ls_shell.number_reflns_R_work 566 _refine_ls_shell.R_factor_R_work 0.208 _refine_ls_shell.R_factor_R_free 0.215 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ETS _struct.title ;CRYSTAL STRUCTURE OF A BACTERIAL DOMAIN OF UNKNOWN FUNCTION FROM DUF1798 FAMILY (MW1337) FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS AT 2.25 A RESOLUTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ETS _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS A BIOLOGICALLY SIGNIFICANT OLIGIMERIZATION STATE. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 11 ? GLN A 38 ? HIS A -1 GLN A 26 1 ? 28 HELX_P HELX_P2 2 THR A 46 ? HIS A 64 ? THR A 34 HIS A 52 1 ? 19 HELX_P HELX_P3 3 HIS A 64 ? ILE A 69 ? HIS A 52 ILE A 57 1 ? 6 HELX_P HELX_P4 4 ASN A 75 ? CYS A 93 ? ASN A 63 CYS A 81 1 ? 19 HELX_P HELX_P5 5 SER A 99 ? VAL A 121 ? SER A 87 VAL A 109 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A ASN 14 N ? ? A MSE 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A ASN 26 C ? ? ? 1_555 A MSE 27 N ? ? A ASN 14 A MSE 15 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A MSE 27 C ? ? ? 1_555 A GLN 28 N ? ? A MSE 15 A GLN 16 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A TYR 73 C ? ? ? 1_555 A MSE 74 N ? ? A TYR 61 A MSE 62 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A MSE 74 C ? ? ? 1_555 A ASN 75 N ? ? A MSE 62 A ASN 63 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 117 ? 4 'BINDING SITE FOR RESIDUE PO4 A 117' AC2 Software A CL 118 ? 3 'BINDING SITE FOR RESIDUE CL A 118' AC3 Software A CL 119 ? 3 'BINDING SITE FOR RESIDUE CL A 119' AC4 Software A CL 120 ? 3 'BINDING SITE FOR RESIDUE CL A 120' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 55 ? ASP A 43 . ? 11_565 ? 2 AC1 4 LYS A 62 ? LYS A 50 . ? 1_555 ? 3 AC1 4 GLU A 87 ? GLU A 75 . ? 1_555 ? 4 AC1 4 HOH F . ? HOH A 143 . ? 11_565 ? 5 AC2 3 ASN A 75 ? ASN A 63 . ? 1_555 ? 6 AC2 3 ARG A 77 ? ARG A 65 . ? 1_555 ? 7 AC2 3 CL D . ? CL A 119 . ? 1_555 ? 8 AC3 3 ARG A 97 ? ARG A 85 . ? 11_565 ? 9 AC3 3 CL C . ? CL A 118 . ? 1_555 ? 10 AC3 3 HOH F . ? HOH A 124 . ? 1_555 ? 11 AC4 3 GLN A 111 ? GLN A 99 . ? 1_555 ? 12 AC4 3 GLN A 115 ? GLN A 103 . ? 1_555 ? 13 AC4 3 HOH F . ? HOH A 162 . ? 1_555 ? # _atom_sites.entry_id 2ETS _atom_sites.fract_transf_matrix[1][1] 0.01070 _atom_sites.fract_transf_matrix[1][2] 0.00618 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01235 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00989 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 -4 HIS HIS A . n A 1 9 HIS 9 -3 -3 HIS HIS A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 ASN 14 2 2 ASN ASN A . n A 1 15 ASP 15 3 3 ASP ASP A . n A 1 16 LEU 16 4 4 LEU LEU A . n A 1 17 VAL 17 5 5 VAL VAL A . n A 1 18 GLU 18 6 6 GLU GLU A . n A 1 19 SER 19 7 7 SER SER A . n A 1 20 LEU 20 8 8 LEU LEU A . n A 1 21 ILE 21 9 9 ILE ILE A . n A 1 22 TYR 22 10 10 TYR TYR A . n A 1 23 GLU 23 11 11 GLU GLU A . n A 1 24 VAL 24 12 12 VAL VAL A . n A 1 25 ASN 25 13 13 ASN ASN A . n A 1 26 ASN 26 14 14 ASN ASN A . n A 1 27 MSE 27 15 15 MSE MSE A . n A 1 28 GLN 28 16 16 GLN GLN A . n A 1 29 GLN 29 17 17 GLN GLN A . n A 1 30 ASN 30 18 18 ASN ASN A . n A 1 31 PHE 31 19 19 PHE PHE A . n A 1 32 GLU 32 20 20 GLU GLU A . n A 1 33 ASN 33 21 21 ASN ASN A . n A 1 34 VAL 34 22 22 VAL VAL A . n A 1 35 LYS 35 23 23 LYS LYS A . n A 1 36 SER 36 24 24 SER SER A . n A 1 37 GLN 37 25 25 GLN GLN A . n A 1 38 GLN 38 26 26 GLN GLN A . n A 1 39 GLN 39 27 27 GLN GLN A . n A 1 40 ASP 40 28 28 ASP ASP A . n A 1 41 HIS 41 29 29 HIS HIS A . n A 1 42 ASP 42 30 30 ASP ASP A . n A 1 43 PHE 43 31 31 PHE PHE A . n A 1 44 TYR 44 32 32 TYR TYR A . n A 1 45 GLN 45 33 33 GLN GLN A . n A 1 46 THR 46 34 34 THR THR A . n A 1 47 VAL 47 35 35 VAL VAL A . n A 1 48 LYS 48 36 36 LYS LYS A . n A 1 49 PRO 49 37 37 PRO PRO A . n A 1 50 TYR 50 38 38 TYR TYR A . n A 1 51 THR 51 39 39 THR THR A . n A 1 52 GLU 52 40 40 GLU GLU A . n A 1 53 HIS 53 41 41 HIS HIS A . n A 1 54 ILE 54 42 42 ILE ILE A . n A 1 55 ASP 55 43 43 ASP ASP A . n A 1 56 SER 56 44 44 SER SER A . n A 1 57 ILE 57 45 45 ILE ILE A . n A 1 58 LEU 58 46 46 LEU LEU A . n A 1 59 ASN 59 47 47 ASN ASN A . n A 1 60 GLU 60 48 48 GLU GLU A . n A 1 61 ILE 61 49 49 ILE ILE A . n A 1 62 LYS 62 50 50 LYS LYS A . n A 1 63 LEU 63 51 51 LEU LEU A . n A 1 64 HIS 64 52 52 HIS HIS A . n A 1 65 ARG 65 53 53 ARG ARG A . n A 1 66 GLU 66 54 54 GLU GLU A . n A 1 67 PHE 67 55 55 PHE PHE A . n A 1 68 ILE 68 56 56 ILE ILE A . n A 1 69 ILE 69 57 57 ILE ILE A . n A 1 70 GLU 70 58 58 GLU GLU A . n A 1 71 VAL 71 59 59 VAL VAL A . n A 1 72 PRO 72 60 60 PRO PRO A . n A 1 73 TYR 73 61 61 TYR TYR A . n A 1 74 MSE 74 62 62 MSE MSE A . n A 1 75 ASN 75 63 63 ASN ASN A . n A 1 76 SER 76 64 64 SER SER A . n A 1 77 ARG 77 65 65 ARG ARG A . n A 1 78 LYS 78 66 66 LYS LYS A . n A 1 79 PHE 79 67 67 PHE PHE A . n A 1 80 GLU 80 68 68 GLU GLU A . n A 1 81 LEU 81 69 69 LEU LEU A . n A 1 82 LEU 82 70 70 LEU LEU A . n A 1 83 ILE 83 71 71 ILE ILE A . n A 1 84 ALA 84 72 72 ALA ALA A . n A 1 85 ASN 85 73 73 ASN ASN A . n A 1 86 ILE 86 74 74 ILE ILE A . n A 1 87 GLU 87 75 75 GLU GLU A . n A 1 88 GLN 88 76 76 GLN GLN A . n A 1 89 LEU 89 77 77 LEU LEU A . n A 1 90 SER 90 78 78 SER SER A . n A 1 91 VAL 91 79 79 VAL VAL A . n A 1 92 GLU 92 80 80 GLU GLU A . n A 1 93 CYS 93 81 81 CYS CYS A . n A 1 94 HIS 94 82 82 HIS HIS A . n A 1 95 PHE 95 83 83 PHE PHE A . n A 1 96 LYS 96 84 84 LYS LYS A . n A 1 97 ARG 97 85 85 ARG ARG A . n A 1 98 THR 98 86 86 THR THR A . n A 1 99 SER 99 87 87 SER SER A . n A 1 100 ARG 100 88 88 ARG ARG A . n A 1 101 LYS 101 89 89 LYS LYS A . n A 1 102 LEU 102 90 90 LEU LEU A . n A 1 103 PHE 103 91 91 PHE PHE A . n A 1 104 ILE 104 92 92 ILE ILE A . n A 1 105 GLU 105 93 93 GLU GLU A . n A 1 106 LYS 106 94 94 LYS LYS A . n A 1 107 LEU 107 95 95 LEU LEU A . n A 1 108 LYS 108 96 96 LYS LYS A . n A 1 109 SER 109 97 97 SER SER A . n A 1 110 VAL 110 98 98 VAL VAL A . n A 1 111 GLN 111 99 99 GLN GLN A . n A 1 112 TYR 112 100 100 TYR TYR A . n A 1 113 ASP 113 101 101 ASP ASP A . n A 1 114 LEU 114 102 102 LEU LEU A . n A 1 115 GLN 115 103 103 GLN GLN A . n A 1 116 ASN 116 104 104 ASN ASN A . n A 1 117 ILE 117 105 105 ILE ILE A . n A 1 118 LEU 118 106 106 LEU LEU A . n A 1 119 ASP 119 107 107 ASP ASP A . n A 1 120 GLY 120 108 108 GLY GLY A . n A 1 121 VAL 121 109 109 VAL VAL A . n A 1 122 THR 122 110 110 THR THR A . n A 1 123 LYS 123 111 ? ? ? A . n A 1 124 GLU 124 112 ? ? ? A . n A 1 125 GLY 125 113 ? ? ? A . n A 1 126 THR 126 114 ? ? ? A . n A 1 127 ASP 127 115 ? ? ? A . n A 1 128 GLY 128 116 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 117 1 PO4 PO4 A . C 3 CL 1 118 2 CL CL A . D 3 CL 1 119 3 CL CL A . E 3 CL 1 120 4 CL CL A . F 4 HOH 1 121 5 HOH HOH A . F 4 HOH 2 122 6 HOH HOH A . F 4 HOH 3 123 7 HOH HOH A . F 4 HOH 4 124 8 HOH HOH A . F 4 HOH 5 125 9 HOH HOH A . F 4 HOH 6 126 10 HOH HOH A . F 4 HOH 7 127 11 HOH HOH A . F 4 HOH 8 128 12 HOH HOH A . F 4 HOH 9 129 13 HOH HOH A . F 4 HOH 10 130 14 HOH HOH A . F 4 HOH 11 131 15 HOH HOH A . F 4 HOH 12 132 16 HOH HOH A . F 4 HOH 13 133 17 HOH HOH A . F 4 HOH 14 134 18 HOH HOH A . F 4 HOH 15 135 19 HOH HOH A . F 4 HOH 16 136 20 HOH HOH A . F 4 HOH 17 137 21 HOH HOH A . F 4 HOH 18 138 22 HOH HOH A . F 4 HOH 19 139 23 HOH HOH A . F 4 HOH 20 140 24 HOH HOH A . F 4 HOH 21 141 25 HOH HOH A . F 4 HOH 22 142 26 HOH HOH A . F 4 HOH 23 143 27 HOH HOH A . F 4 HOH 24 144 28 HOH HOH A . F 4 HOH 25 145 29 HOH HOH A . F 4 HOH 26 146 30 HOH HOH A . F 4 HOH 27 147 31 HOH HOH A . F 4 HOH 28 148 32 HOH HOH A . F 4 HOH 29 149 33 HOH HOH A . F 4 HOH 30 150 34 HOH HOH A . F 4 HOH 31 151 35 HOH HOH A . F 4 HOH 32 152 36 HOH HOH A . F 4 HOH 33 153 37 HOH HOH A . F 4 HOH 34 154 38 HOH HOH A . F 4 HOH 35 155 39 HOH HOH A . F 4 HOH 36 156 40 HOH HOH A . F 4 HOH 37 157 41 HOH HOH A . F 4 HOH 38 158 42 HOH HOH A . F 4 HOH 39 159 43 HOH HOH A . F 4 HOH 40 160 44 HOH HOH A . F 4 HOH 41 161 45 HOH HOH A . F 4 HOH 42 162 46 HOH HOH A . F 4 HOH 43 163 47 HOH HOH A . F 4 HOH 44 164 48 HOH HOH A . F 4 HOH 45 165 49 HOH HOH A . F 4 HOH 46 166 50 HOH HOH A . F 4 HOH 47 167 51 HOH HOH A . F 4 HOH 48 168 52 HOH HOH A . F 4 HOH 49 169 53 HOH HOH A . F 4 HOH 50 170 54 HOH HOH A . F 4 HOH 51 171 55 HOH HOH A . F 4 HOH 52 172 56 HOH HOH A . F 4 HOH 53 173 57 HOH HOH A . F 4 HOH 54 174 58 HOH HOH A . F 4 HOH 55 175 59 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 27 A MSE 15 ? MET SELENOMETHIONINE 3 A MSE 74 A MSE 62 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2,3,4,5,6 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 12500 ? 2 MORE -295 ? 2 'SSA (A^2)' 29670 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 46.7365000000 0.8660254038 -0.5000000000 0.0000000000 80.9499925679 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -46.7365000000 -0.8660254038 -0.5000000000 0.0000000000 80.9499925679 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_455 y-1/3,x+1/3,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 -46.7365000000 0.8660254038 0.5000000000 0.0000000000 26.9833308560 0.0000000000 0.0000000000 -1.0000000000 33.7213333333 5 'crystal symmetry operation' 11_565 x-y+2/3,-y+4/3,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 107.9333234239 0.0000000000 0.0000000000 -1.0000000000 33.7213333333 6 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 46.7365000000 -0.8660254038 0.5000000000 0.0000000000 26.9833308560 0.0000000000 0.0000000000 -1.0000000000 33.7213333333 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 138 ? F HOH . 2 1 A HOH 144 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-08 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' 'Author supporting evidence' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_assembly_auth_evidence 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 20.0650 _pdbx_refine_tls.origin_y 53.8410 _pdbx_refine_tls.origin_z 27.2360 _pdbx_refine_tls.T[1][1] -0.2368 _pdbx_refine_tls.T[2][2] 0.0684 _pdbx_refine_tls.T[3][3] -0.1926 _pdbx_refine_tls.T[1][2] -0.0135 _pdbx_refine_tls.T[1][3] -0.1507 _pdbx_refine_tls.T[2][3] -0.1953 _pdbx_refine_tls.L[1][1] 4.3636 _pdbx_refine_tls.L[2][2] 6.5572 _pdbx_refine_tls.L[3][3] 2.2547 _pdbx_refine_tls.L[1][2] 0.3765 _pdbx_refine_tls.L[1][3] 0.5765 _pdbx_refine_tls.L[2][3] 0.7858 _pdbx_refine_tls.S[1][1] 0.2543 _pdbx_refine_tls.S[1][2] -0.6654 _pdbx_refine_tls.S[1][3] -0.0666 _pdbx_refine_tls.S[2][1] 0.3507 _pdbx_refine_tls.S[2][2] 0.1241 _pdbx_refine_tls.S[2][3] -0.6192 _pdbx_refine_tls.S[3][1] 0.1011 _pdbx_refine_tls.S[3][2] 0.4803 _pdbx_refine_tls.S[3][3] -0.3784 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -4 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 8 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 110 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 122 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? ? 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 SCALA . ? ? 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran ? 2 PDB_EXTRACT 1.601 'Jan. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 5 SHELXD . ? ? ? ? phasing ? ? ? 6 autoSHARP . ? ? ? ? phasing ? ? ? 7 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; 999 ;SEQUENCE THE STRAIN CLONED DIFFERS FROM THE SEQUENCED STRAIN IN DATABASE. SEQUENCING CONFIRMED THAT RESIDUE 45 IS ILE IN THIS STRAIN. THE ELECTRON DENSITY SUPPORTS THIS ASSIGNMENT. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A -2 ? ? -105.16 57.40 2 1 THR A 34 ? ? -125.21 -54.78 3 1 VAL A 109 ? ? -107.52 58.17 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 HIS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 -2 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 HIS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 -1 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 140.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -4 ? CG ? A HIS 8 CG 2 1 Y 1 A HIS -4 ? ND1 ? A HIS 8 ND1 3 1 Y 1 A HIS -4 ? CD2 ? A HIS 8 CD2 4 1 Y 1 A HIS -4 ? CE1 ? A HIS 8 CE1 5 1 Y 1 A HIS -4 ? NE2 ? A HIS 8 NE2 6 1 Y 1 A HIS -3 ? CB ? A HIS 9 CB 7 1 Y 1 A HIS -3 ? CG ? A HIS 9 CG 8 1 Y 1 A HIS -3 ? ND1 ? A HIS 9 ND1 9 1 Y 1 A HIS -3 ? CD2 ? A HIS 9 CD2 10 1 Y 1 A HIS -3 ? CE1 ? A HIS 9 CE1 11 1 Y 1 A HIS -3 ? NE2 ? A HIS 9 NE2 12 1 Y 1 A HIS -2 ? CB ? A HIS 10 CB 13 1 Y 1 A HIS -2 ? CG ? A HIS 10 CG 14 1 Y 1 A HIS -2 ? ND1 ? A HIS 10 ND1 15 1 Y 1 A HIS -2 ? CD2 ? A HIS 10 CD2 16 1 Y 1 A HIS -2 ? CE1 ? A HIS 10 CE1 17 1 Y 1 A HIS -2 ? NE2 ? A HIS 10 NE2 18 1 Y 1 A SER 44 ? OG ? A SER 56 OG 19 1 Y 1 A GLU 48 ? CD ? A GLU 60 CD 20 1 Y 1 A GLU 48 ? OE1 ? A GLU 60 OE1 21 1 Y 1 A GLU 48 ? OE2 ? A GLU 60 OE2 22 1 Y 1 A GLU 54 ? CD ? A GLU 66 CD 23 1 Y 1 A GLU 54 ? OE1 ? A GLU 66 OE1 24 1 Y 1 A GLU 54 ? OE2 ? A GLU 66 OE2 25 1 Y 1 A ARG 85 ? CG ? A ARG 97 CG 26 1 Y 1 A ARG 85 ? CD ? A ARG 97 CD 27 1 Y 1 A ARG 85 ? NE ? A ARG 97 NE 28 1 Y 1 A ARG 85 ? CZ ? A ARG 97 CZ 29 1 Y 1 A ARG 85 ? NH1 ? A ARG 97 NH1 30 1 Y 1 A ARG 85 ? NH2 ? A ARG 97 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A LYS 111 ? A LYS 123 9 1 Y 1 A GLU 112 ? A GLU 124 10 1 Y 1 A GLY 113 ? A GLY 125 11 1 Y 1 A THR 114 ? A THR 126 12 1 Y 1 A ASP 115 ? A ASP 127 13 1 Y 1 A GLY 116 ? A GLY 128 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 'CHLORIDE ION' CL 4 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #