data_2EZF # _entry.id 2EZF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EZF pdb_00002ezf 10.2210/pdb2ezf/pdb WWPDB D_1000178057 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-10-15 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 5 'Structure model' 1 4 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EZF _pdbx_database_status.recvd_initial_deposition_date 1997-06-04 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2EZG _pdbx_database_related.details 'ENSEMBLE OF 35 STRUCTURES' _pdbx_database_related.content_type ensemble # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clore, G.M.' 1 'Huth, J.R.' 2 'Bewley, C.' 3 'Gronenborn, A.M.' 4 # _citation.id primary _citation.title 'The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motif.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 4 _citation.page_first 657 _citation.page_last 665 _citation.year 1997 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9253416 _citation.pdbx_database_id_DOI 10.1038/nsb0897-657 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huth, J.R.' 1 ? primary 'Bewley, C.A.' 2 ? primary 'Nissen, M.S.' 3 ? primary 'Evans, J.N.' 4 ? primary 'Reeves, R.' 5 ? primary 'Gronenborn, A.M.' 6 ? primary 'Clore, G.M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*C)-3') ; 3662.404 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*C)-3') ; 3662.404 1 ? ? ? ? 3 polymer man 'HIGH MOBILITY GROUP PROTEIN HMG-I/HMG-Y' 1185.469 1 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'HIGH MOBILITY GROUP PROTEIN HMG' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DA)(DA)(DA)(DT)(DT)(DC)(DC)(DT)(DC)' GGGAAATTCCTC B ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DG)(DA)(DA)(DT)(DT)(DT)(DC)(DC)(DC)' GAGGAATTTCCC C ? 3 'polypeptide(L)' no no GRKPRGRPKK GRKPRGRPKK A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DC n 1 11 DT n 1 12 DC n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DC n 2 11 DC n 2 12 DC n 3 1 GLY n 3 2 ARG n 3 3 LYS n 3 4 PRO n 3 5 ARG n 3 6 GLY n 3 7 ARG n 3 8 PRO n 3 9 LYS n 3 10 LYS n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 301 301 DG G B . n A 1 2 DG 2 302 302 DG G B . n A 1 3 DG 3 303 303 DG G B . n A 1 4 DA 4 304 304 DA A B . n A 1 5 DA 5 305 305 DA A B . n A 1 6 DA 6 306 306 DA A B . n A 1 7 DT 7 307 307 DT T B . n A 1 8 DT 8 308 308 DT T B . n A 1 9 DC 9 309 309 DC C B . n A 1 10 DC 10 310 310 DC C B . n A 1 11 DT 11 311 311 DT T B . n A 1 12 DC 12 312 312 DC C B . n B 2 1 DG 1 313 313 DG G C . n B 2 2 DA 2 314 314 DA A C . n B 2 3 DG 3 315 315 DG G C . n B 2 4 DG 4 316 316 DG G C . n B 2 5 DA 5 317 317 DA A C . n B 2 6 DA 6 318 318 DA A C . n B 2 7 DT 7 319 319 DT T C . n B 2 8 DT 8 320 320 DT T C . n B 2 9 DT 9 321 321 DT T C . n B 2 10 DC 10 322 322 DC C C . n B 2 11 DC 11 323 323 DC C C . n B 2 12 DC 12 324 324 DC C C . n C 3 1 GLY 1 32 32 GLY GLY A . n C 3 2 ARG 2 33 33 ARG ARG A . n C 3 3 LYS 3 34 34 LYS LYS A . n C 3 4 PRO 4 35 35 PRO PRO A . n C 3 5 ARG 5 36 36 ARG ARG A . n C 3 6 GLY 6 37 37 GLY GLY A . n C 3 7 ARG 7 38 38 ARG ARG A . n C 3 8 PRO 8 39 39 PRO PRO A . n C 3 9 LYS 9 40 40 LYS LYS A . n C 3 10 LYS 10 41 41 LYS LYS A . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # _cell.entry_id 2EZF _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EZF _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2EZF _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2EZF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2EZF _struct.title ;SOLUTION STRUCTURE OF A COMPLEX OF THE THIRD DNA BINDING DOMAIN OF HUMAN HMG-I(Y) BOUND TO DNA DODECAMER CONTAINING THE PRDII SITE OF THE INTERFERON-BETA PROMOTER, NMR, MINIMIZED AVERAGE STRUCTURE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EZF _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;DNA BINDING PROTEIN, MINOR GROOVE DNA BINDING, TRANSCRIPTIONAL CO-ACTIVATOR, ARCHITECTURAL FACTOR, COMPLEX (DNA-BINDING PROTEIN-DNA), DNA BINDING PROTEIN-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP HMGIY_HUMAN 3 ? ? P17096 ? 2 PDB 2EZF 1 ? ? 2EZF ? 3 PDB 2EZF 2 ? ? 2EZF ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2EZF A 1 ? 10 ? P17096 68 ? 77 ? 32 41 2 2 2EZF B 1 ? 12 ? 2EZF 301 ? 312 ? 301 312 3 3 2EZF C 1 ? 12 ? 2EZF 313 ? 324 ? 313 324 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? B DG 301 C DC 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? B DG 301 C DC 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? B DG 301 C DC 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 302 C DC 323 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 302 C DC 323 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 302 C DC 323 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 303 C DC 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 303 C DC 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 303 C DC 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? B DA 304 C DT 321 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? B DA 304 C DT 321 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 305 C DT 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 305 C DT 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 306 C DT 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 306 C DT 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 307 C DA 318 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 307 C DA 318 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 308 C DA 317 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 308 C DA 317 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 309 C DG 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 309 C DG 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 309 C DG 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 310 C DG 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 310 C DG 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 310 C DG 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 311 C DA 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 311 C DA 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 312 C DG 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 312 C DG 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 312 C DG 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 35 ? ? -69.98 -177.76 2 1 PRO A 39 ? ? -45.61 154.72 # _pdbx_nmr_ensemble.entry_id 2EZF _pdbx_nmr_ensemble.conformers_calculated_total_number 35 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 306 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_details.entry_id 2EZF _pdbx_nmr_details.text ;DATA WERE RECORDED ON A 2:1 COMPLEX OF DNA DODECAMER TO HMG-I(Y) 50-91 WHICH CONTAINS THE SECOND AND THIRD DNA DNA BINDING DOMAINS. EACH DNA BINDING DOMAIN BINDS TO 1 MOLECULE OF DNA. ; # _pdbx_nmr_refine.entry_id 2EZF _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129 - 136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANT (GARRETT ET AL. (1984) J. MAGN RESON. SERIES B 104, 99 - 103), CARBON CHEMICAL SHIFT (KUSZEWSKI ET AL. (1995) J. MAGN. RESON. SERIES B 106, 92 - 96) RESTRAINTS AND A CONFORMATIONAL DATABASE POTENTIAL (KUSZEWSKI ET AL. (1996) PROTEIN SCI 5, 1067 - 1080 AND (1997) J. MAGN. RESON. 125, 171-177) THE 3D STRUCTURE OF THE COMPLEX OF THE THIRD DNA BINDING DOMAIN OF HMG-I(Y) COMPLEXED TO DNA WAS SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR (A) PROTEIN: 31 SEQUENTIAL (|I-J|=1), 2 MEDIUM RANGE (1 < |I-J| >=5) AND 22 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; NULL 17 TORSION ANGLE RESTRAINTS 6 THREE-BOND HN-HA AND 3 THREE_BOND COCO COUPLING CONSTANT RESTRAINTS; 17 (9 CALPHA AND 8 CBETA) 13C SHIFT RESTRAINTS. (B) DNA: 249 INTRARESIDUE, 119 SEQUENTIAL INTRASTRAND AND 33 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 42 DISTANCES FOR WATSON-CRICK BASE PAIR HYDROGEN BONDS; 136 TORSION ANGLE RESTRAINTS (C) 34 INTERMOLECULAR INTERPROTON DISTANCE RESTRAINTS (D) 4 INTERMOLECULAR DISTANCE RESTRAINTS TO PHOSPHATES (E) 28 'REPULSIVE' RESTRAINTS THE STRUCTURE IN THIS ENTRY IS THE RESTRAINED REGULARIZED MEAN STRUCTURE. THE LAST NUMERIC COLUMN REPRESENTS THE RMS OF THE 35 INDIVIDUAL SIMULATED ANNEALING STRUCTURES FOUND IN PDB ENTRY 2EZF ABOUT THE MEAN COORDINATE POSITIONS. THE LAST NUMERIC COLUMN IN THE INDIVIDUAL SA STRUCTURES HAS NO MEANING. RESIDUES 32 - 41 OF THE PROTEIN CORRESPOND TO RESIDUES 79 - 88 OF INTACT HMG-I(Y). ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' 'XPLOR MODIFIED' MODIFIED ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 DA OP3 O N N 28 DA P P N N 29 DA OP1 O N N 30 DA OP2 O N N 31 DA "O5'" O N N 32 DA "C5'" C N N 33 DA "C4'" C N R 34 DA "O4'" O N N 35 DA "C3'" C N S 36 DA "O3'" O N N 37 DA "C2'" C N N 38 DA "C1'" C N R 39 DA N9 N Y N 40 DA C8 C Y N 41 DA N7 N Y N 42 DA C5 C Y N 43 DA C6 C Y N 44 DA N6 N N N 45 DA N1 N Y N 46 DA C2 C Y N 47 DA N3 N Y N 48 DA C4 C Y N 49 DA HOP3 H N N 50 DA HOP2 H N N 51 DA "H5'" H N N 52 DA "H5''" H N N 53 DA "H4'" H N N 54 DA "H3'" H N N 55 DA "HO3'" H N N 56 DA "H2'" H N N 57 DA "H2''" H N N 58 DA "H1'" H N N 59 DA H8 H N N 60 DA H61 H N N 61 DA H62 H N N 62 DA H2 H N N 63 DC OP3 O N N 64 DC P P N N 65 DC OP1 O N N 66 DC OP2 O N N 67 DC "O5'" O N N 68 DC "C5'" C N N 69 DC "C4'" C N R 70 DC "O4'" O N N 71 DC "C3'" C N S 72 DC "O3'" O N N 73 DC "C2'" C N N 74 DC "C1'" C N R 75 DC N1 N N N 76 DC C2 C N N 77 DC O2 O N N 78 DC N3 N N N 79 DC C4 C N N 80 DC N4 N N N 81 DC C5 C N N 82 DC C6 C N N 83 DC HOP3 H N N 84 DC HOP2 H N N 85 DC "H5'" H N N 86 DC "H5''" H N N 87 DC "H4'" H N N 88 DC "H3'" H N N 89 DC "HO3'" H N N 90 DC "H2'" H N N 91 DC "H2''" H N N 92 DC "H1'" H N N 93 DC H41 H N N 94 DC H42 H N N 95 DC H5 H N N 96 DC H6 H N N 97 DG OP3 O N N 98 DG P P N N 99 DG OP1 O N N 100 DG OP2 O N N 101 DG "O5'" O N N 102 DG "C5'" C N N 103 DG "C4'" C N R 104 DG "O4'" O N N 105 DG "C3'" C N S 106 DG "O3'" O N N 107 DG "C2'" C N N 108 DG "C1'" C N R 109 DG N9 N Y N 110 DG C8 C Y N 111 DG N7 N Y N 112 DG C5 C Y N 113 DG C6 C N N 114 DG O6 O N N 115 DG N1 N N N 116 DG C2 C N N 117 DG N2 N N N 118 DG N3 N N N 119 DG C4 C Y N 120 DG HOP3 H N N 121 DG HOP2 H N N 122 DG "H5'" H N N 123 DG "H5''" H N N 124 DG "H4'" H N N 125 DG "H3'" H N N 126 DG "HO3'" H N N 127 DG "H2'" H N N 128 DG "H2''" H N N 129 DG "H1'" H N N 130 DG H8 H N N 131 DG H1 H N N 132 DG H21 H N N 133 DG H22 H N N 134 DT OP3 O N N 135 DT P P N N 136 DT OP1 O N N 137 DT OP2 O N N 138 DT "O5'" O N N 139 DT "C5'" C N N 140 DT "C4'" C N R 141 DT "O4'" O N N 142 DT "C3'" C N S 143 DT "O3'" O N N 144 DT "C2'" C N N 145 DT "C1'" C N R 146 DT N1 N N N 147 DT C2 C N N 148 DT O2 O N N 149 DT N3 N N N 150 DT C4 C N N 151 DT O4 O N N 152 DT C5 C N N 153 DT C7 C N N 154 DT C6 C N N 155 DT HOP3 H N N 156 DT HOP2 H N N 157 DT "H5'" H N N 158 DT "H5''" H N N 159 DT "H4'" H N N 160 DT "H3'" H N N 161 DT "HO3'" H N N 162 DT "H2'" H N N 163 DT "H2''" H N N 164 DT "H1'" H N N 165 DT H3 H N N 166 DT H71 H N N 167 DT H72 H N N 168 DT H73 H N N 169 DT H6 H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 LYS N N N N 181 LYS CA C N S 182 LYS C C N N 183 LYS O O N N 184 LYS CB C N N 185 LYS CG C N N 186 LYS CD C N N 187 LYS CE C N N 188 LYS NZ N N N 189 LYS OXT O N N 190 LYS H H N N 191 LYS H2 H N N 192 LYS HA H N N 193 LYS HB2 H N N 194 LYS HB3 H N N 195 LYS HG2 H N N 196 LYS HG3 H N N 197 LYS HD2 H N N 198 LYS HD3 H N N 199 LYS HE2 H N N 200 LYS HE3 H N N 201 LYS HZ1 H N N 202 LYS HZ2 H N N 203 LYS HZ3 H N N 204 LYS HXT H N N 205 PRO N N N N 206 PRO CA C N S 207 PRO C C N N 208 PRO O O N N 209 PRO CB C N N 210 PRO CG C N N 211 PRO CD C N N 212 PRO OXT O N N 213 PRO H H N N 214 PRO HA H N N 215 PRO HB2 H N N 216 PRO HB3 H N N 217 PRO HG2 H N N 218 PRO HG3 H N N 219 PRO HD2 H N N 220 PRO HD3 H N N 221 PRO HXT H N N 222 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 DA OP3 P sing N N 27 DA OP3 HOP3 sing N N 28 DA P OP1 doub N N 29 DA P OP2 sing N N 30 DA P "O5'" sing N N 31 DA OP2 HOP2 sing N N 32 DA "O5'" "C5'" sing N N 33 DA "C5'" "C4'" sing N N 34 DA "C5'" "H5'" sing N N 35 DA "C5'" "H5''" sing N N 36 DA "C4'" "O4'" sing N N 37 DA "C4'" "C3'" sing N N 38 DA "C4'" "H4'" sing N N 39 DA "O4'" "C1'" sing N N 40 DA "C3'" "O3'" sing N N 41 DA "C3'" "C2'" sing N N 42 DA "C3'" "H3'" sing N N 43 DA "O3'" "HO3'" sing N N 44 DA "C2'" "C1'" sing N N 45 DA "C2'" "H2'" sing N N 46 DA "C2'" "H2''" sing N N 47 DA "C1'" N9 sing N N 48 DA "C1'" "H1'" sing N N 49 DA N9 C8 sing Y N 50 DA N9 C4 sing Y N 51 DA C8 N7 doub Y N 52 DA C8 H8 sing N N 53 DA N7 C5 sing Y N 54 DA C5 C6 sing Y N 55 DA C5 C4 doub Y N 56 DA C6 N6 sing N N 57 DA C6 N1 doub Y N 58 DA N6 H61 sing N N 59 DA N6 H62 sing N N 60 DA N1 C2 sing Y N 61 DA C2 N3 doub Y N 62 DA C2 H2 sing N N 63 DA N3 C4 sing Y N 64 DC OP3 P sing N N 65 DC OP3 HOP3 sing N N 66 DC P OP1 doub N N 67 DC P OP2 sing N N 68 DC P "O5'" sing N N 69 DC OP2 HOP2 sing N N 70 DC "O5'" "C5'" sing N N 71 DC "C5'" "C4'" sing N N 72 DC "C5'" "H5'" sing N N 73 DC "C5'" "H5''" sing N N 74 DC "C4'" "O4'" sing N N 75 DC "C4'" "C3'" sing N N 76 DC "C4'" "H4'" sing N N 77 DC "O4'" "C1'" sing N N 78 DC "C3'" "O3'" sing N N 79 DC "C3'" "C2'" sing N N 80 DC "C3'" "H3'" sing N N 81 DC "O3'" "HO3'" sing N N 82 DC "C2'" "C1'" sing N N 83 DC "C2'" "H2'" sing N N 84 DC "C2'" "H2''" sing N N 85 DC "C1'" N1 sing N N 86 DC "C1'" "H1'" sing N N 87 DC N1 C2 sing N N 88 DC N1 C6 sing N N 89 DC C2 O2 doub N N 90 DC C2 N3 sing N N 91 DC N3 C4 doub N N 92 DC C4 N4 sing N N 93 DC C4 C5 sing N N 94 DC N4 H41 sing N N 95 DC N4 H42 sing N N 96 DC C5 C6 doub N N 97 DC C5 H5 sing N N 98 DC C6 H6 sing N N 99 DG OP3 P sing N N 100 DG OP3 HOP3 sing N N 101 DG P OP1 doub N N 102 DG P OP2 sing N N 103 DG P "O5'" sing N N 104 DG OP2 HOP2 sing N N 105 DG "O5'" "C5'" sing N N 106 DG "C5'" "C4'" sing N N 107 DG "C5'" "H5'" sing N N 108 DG "C5'" "H5''" sing N N 109 DG "C4'" "O4'" sing N N 110 DG "C4'" "C3'" sing N N 111 DG "C4'" "H4'" sing N N 112 DG "O4'" "C1'" sing N N 113 DG "C3'" "O3'" sing N N 114 DG "C3'" "C2'" sing N N 115 DG "C3'" "H3'" sing N N 116 DG "O3'" "HO3'" sing N N 117 DG "C2'" "C1'" sing N N 118 DG "C2'" "H2'" sing N N 119 DG "C2'" "H2''" sing N N 120 DG "C1'" N9 sing N N 121 DG "C1'" "H1'" sing N N 122 DG N9 C8 sing Y N 123 DG N9 C4 sing Y N 124 DG C8 N7 doub Y N 125 DG C8 H8 sing N N 126 DG N7 C5 sing Y N 127 DG C5 C6 sing N N 128 DG C5 C4 doub Y N 129 DG C6 O6 doub N N 130 DG C6 N1 sing N N 131 DG N1 C2 sing N N 132 DG N1 H1 sing N N 133 DG C2 N2 sing N N 134 DG C2 N3 doub N N 135 DG N2 H21 sing N N 136 DG N2 H22 sing N N 137 DG N3 C4 sing N N 138 DT OP3 P sing N N 139 DT OP3 HOP3 sing N N 140 DT P OP1 doub N N 141 DT P OP2 sing N N 142 DT P "O5'" sing N N 143 DT OP2 HOP2 sing N N 144 DT "O5'" "C5'" sing N N 145 DT "C5'" "C4'" sing N N 146 DT "C5'" "H5'" sing N N 147 DT "C5'" "H5''" sing N N 148 DT "C4'" "O4'" sing N N 149 DT "C4'" "C3'" sing N N 150 DT "C4'" "H4'" sing N N 151 DT "O4'" "C1'" sing N N 152 DT "C3'" "O3'" sing N N 153 DT "C3'" "C2'" sing N N 154 DT "C3'" "H3'" sing N N 155 DT "O3'" "HO3'" sing N N 156 DT "C2'" "C1'" sing N N 157 DT "C2'" "H2'" sing N N 158 DT "C2'" "H2''" sing N N 159 DT "C1'" N1 sing N N 160 DT "C1'" "H1'" sing N N 161 DT N1 C2 sing N N 162 DT N1 C6 sing N N 163 DT C2 O2 doub N N 164 DT C2 N3 sing N N 165 DT N3 C4 sing N N 166 DT N3 H3 sing N N 167 DT C4 O4 doub N N 168 DT C4 C5 sing N N 169 DT C5 C7 sing N N 170 DT C5 C6 doub N N 171 DT C7 H71 sing N N 172 DT C7 H72 sing N N 173 DT C7 H73 sing N N 174 DT C6 H6 sing N N 175 GLY N CA sing N N 176 GLY N H sing N N 177 GLY N H2 sing N N 178 GLY CA C sing N N 179 GLY CA HA2 sing N N 180 GLY CA HA3 sing N N 181 GLY C O doub N N 182 GLY C OXT sing N N 183 GLY OXT HXT sing N N 184 LYS N CA sing N N 185 LYS N H sing N N 186 LYS N H2 sing N N 187 LYS CA C sing N N 188 LYS CA CB sing N N 189 LYS CA HA sing N N 190 LYS C O doub N N 191 LYS C OXT sing N N 192 LYS CB CG sing N N 193 LYS CB HB2 sing N N 194 LYS CB HB3 sing N N 195 LYS CG CD sing N N 196 LYS CG HG2 sing N N 197 LYS CG HG3 sing N N 198 LYS CD CE sing N N 199 LYS CD HD2 sing N N 200 LYS CD HD3 sing N N 201 LYS CE NZ sing N N 202 LYS CE HE2 sing N N 203 LYS CE HE3 sing N N 204 LYS NZ HZ1 sing N N 205 LYS NZ HZ2 sing N N 206 LYS NZ HZ3 sing N N 207 LYS OXT HXT sing N N 208 PRO N CA sing N N 209 PRO N CD sing N N 210 PRO N H sing N N 211 PRO CA C sing N N 212 PRO CA CB sing N N 213 PRO CA HA sing N N 214 PRO C O doub N N 215 PRO C OXT sing N N 216 PRO CB CG sing N N 217 PRO CB HB2 sing N N 218 PRO CB HB3 sing N N 219 PRO CG CD sing N N 220 PRO CG HG2 sing N N 221 PRO CG HG3 sing N N 222 PRO CD HD2 sing N N 223 PRO CD HD3 sing N N 224 PRO OXT HXT sing N N 225 # _ndb_struct_conf_na.entry_id 2EZF _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 12 1_555 -0.458 -0.171 0.037 3.931 0.746 2.021 1 B_DG301:DC324_C B 301 ? C 324 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.240 -0.034 0.330 10.328 -2.855 -0.927 2 B_DG302:DC323_C B 302 ? C 323 ? 19 1 1 A DG 3 1_555 B DC 10 1_555 0.070 -0.195 0.540 9.551 -10.369 -2.311 3 B_DG303:DC322_C B 303 ? C 322 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 -0.156 -0.202 0.323 -0.422 -12.407 -0.759 4 B_DA304:DT321_C B 304 ? C 321 ? 20 1 1 A DA 5 1_555 B DT 8 1_555 0.060 -0.110 -0.051 0.004 -9.173 -3.497 5 B_DA305:DT320_C B 305 ? C 320 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.342 -0.118 -0.153 12.017 -4.961 -10.473 6 B_DA306:DT319_C B 306 ? C 319 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.038 -0.072 -0.243 5.366 -14.839 -7.900 7 B_DT307:DA318_C B 307 ? C 318 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.269 -0.226 -0.323 5.916 -23.911 1.069 8 B_DT308:DA317_C B 308 ? C 317 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.226 -0.278 -0.152 -7.322 -14.711 0.858 9 B_DC309:DG316_C B 309 ? C 316 ? 19 1 1 A DC 10 1_555 B DG 3 1_555 -0.097 -0.201 -0.163 -8.869 -11.012 -2.759 10 B_DC310:DG315_C B 310 ? C 315 ? 19 1 1 A DT 11 1_555 B DA 2 1_555 0.001 -0.026 0.075 -5.002 -4.469 -9.699 11 B_DT311:DA314_C B 311 ? C 314 ? 20 1 1 A DC 12 1_555 B DG 1 1_555 0.473 -0.161 0.034 -3.734 0.591 2.394 12 B_DC312:DG313_C B 312 ? C 313 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.757 0.415 4.057 -2.048 -5.916 35.846 1.684 0.860 3.976 -9.522 3.296 36.371 1 BB_DG301DG302:DC323DC324_CC B 301 ? C 324 ? B 302 ? C 323 ? 1 A DG 2 1_555 B DC 11 1_555 A DG 3 1_555 B DC 10 1_555 -0.072 0.157 3.938 -0.710 -2.253 35.686 0.647 -0.006 3.922 -3.671 1.157 35.762 2 BB_DG302DG303:DC322DC323_CC B 302 ? C 323 ? B 303 ? C 322 ? 1 A DG 3 1_555 B DC 10 1_555 A DA 4 1_555 B DT 9 1_555 0.148 0.161 4.240 0.881 1.980 35.570 -0.110 -0.076 4.245 3.237 -1.440 35.633 3 BB_DG303DA304:DT321DC322_CC B 303 ? C 322 ? B 304 ? C 321 ? 1 A DA 4 1_555 B DT 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.235 0.016 3.850 0.745 -3.112 36.237 0.535 0.498 3.830 -4.991 -1.196 36.373 4 BB_DA304DA305:DT320DT321_CC B 304 ? C 321 ? B 305 ? C 320 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.526 -0.190 3.197 -0.705 -1.905 32.871 -0.017 0.809 3.212 -3.363 1.244 32.932 5 BB_DA305DA306:DT319DT320_CC B 305 ? C 320 ? B 306 ? C 319 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.172 -0.204 4.136 2.111 0.120 33.648 -0.377 0.137 4.138 0.206 -3.643 33.713 6 BB_DA306DT307:DA318DT319_CC B 306 ? C 319 ? B 307 ? C 318 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.719 0.041 3.632 1.947 -6.065 37.736 0.913 -0.825 3.614 -9.296 -2.984 38.250 7 BB_DT307DT308:DA317DA318_CC B 307 ? C 318 ? B 308 ? C 317 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.052 0.490 4.077 -1.536 2.593 40.561 0.345 -0.138 4.098 3.734 2.212 40.668 8 BB_DT308DC309:DG316DA317_CC B 308 ? C 317 ? B 309 ? C 316 ? 1 A DC 9 1_555 B DG 4 1_555 A DC 10 1_555 B DG 3 1_555 -0.130 0.270 3.825 -0.598 -3.191 36.146 0.954 0.112 3.790 -5.130 0.961 36.286 9 BB_DC309DC310:DG315DG316_CC B 309 ? C 316 ? B 310 ? C 315 ? 1 A DC 10 1_555 B DG 3 1_555 A DT 11 1_555 B DA 2 1_555 -0.428 -0.021 3.715 -1.014 -6.985 35.459 1.089 0.527 3.664 -11.330 1.645 36.133 10 BB_DC310DT311:DA314DG315_CC B 310 ? C 315 ? B 311 ? C 314 ? 1 A DT 11 1_555 B DA 2 1_555 A DC 12 1_555 B DG 1 1_555 0.916 0.337 4.061 -0.204 -1.258 33.646 0.835 -1.622 4.041 -2.173 0.352 33.670 11 BB_DT311DC312:DG313DA314_CC B 311 ? C 314 ? B 312 ? C 313 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 AMX500 Bruker 600 2 AMX600 Bruker 500 3 DMX600 Bruker 750 4 DMX750 Bruker 750 # _atom_sites.entry_id 2EZF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_