HEADER DNA BINDING PROTEIN 26-JUL-98 2EZX TITLE SOLUTION STRUCTURE OF HUMAN BARRIER-TO-AUTOINTEGRATION FACTOR BAF, TITLE 2 NMR, REGULARIZED MEAN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BARRIER-TO-AUTOINTEGRATION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-BINDING PROTEIN, INTEGRATION, AIDS, RETROVIRUSES, DNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR AUTHOR G.M.CLORE,M.CAI,A.M.GRONENBORN REVDAT 4 29-MAY-24 2EZX 1 REMARK REVDAT 3 09-MAR-22 2EZX 1 KEYWDS REMARK REVDAT 2 24-FEB-09 2EZX 1 VERSN REVDAT 1 13-JAN-99 2EZX 0 JRNL AUTH M.CAI,Y.HUANG,R.ZHENG,S.Q.WEI,R.GHIRLANDO,M.S.LEE,R.CRAIGIE, JRNL AUTH 2 A.M.GRONENBORN,G.M.CLORE JRNL TITL SOLUTION STRUCTURE OF THE CELLULAR FACTOR BAF RESPONSIBLE JRNL TITL 2 FOR PROTECTING RETROVIRAL DNA FROM AUTOINTEGRATION. JRNL REF NAT.STRUCT.BIOL. V. 5 903 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9783751 JRNL DOI 10.1038/2345 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES WERE CALCULATED USING THE SIMULATED REMARK 3 ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. REMARK 3 229, 129 - 136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) REMARK 3 MODIFIED TO INCORPORATE COUPLING CONSTANT (GARRETT ET AL. REMARK 3 (1984) J.MAGN.RESON. SERIES B 104, 99 - 103), CARBON REMARK 3 CHEMICAL SHIFT (KUSZEWSKI ET AL. (1995) J.MAGN.RESON. REMARK 3 SERIES B 106, 92 - 96) RESTRAINTS, 1H CHEMICAL SHIFT REMARK 3 RESTRAINTS (KUSZEWSKI ET AL. (1995) J.MAGN.RESON. SERIES REMARK 3 B 107, 293-297; (1996) J.MAGN.RESON. SERIES B 112, REMARK 3 79-81), AND A CONFORMATIONAL DATABASE POTENTIAL REMARK 3 (KUSZWESKI ET AL. (1996) PROTEIN SCI. 5, 1067-108 AND REMARK 3 (1997) J.MAGN.RESON. 125, 171-177). REMARK 3 REMARK 3 THE 3D STRUCTURE OF THE 21 KDA BAF DIMER WAS SOLVED BY REMARK 3 MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR REMARK 3 BASED ON 1655 EXPERIMENTAL RESTRAINTS (PER MONOMER): REMARK 3 (A) INTRASUBUNIT: 288 SEQUENTIAL (|I-J|=1), 267 MEDIUM REMARK 3 RANGE (1 < |I-J| >=5) AND 190 LONG RANGE (|I-J| >5) REMARK 3 INTERRESIDUE, AND 7 INTRARESIDUE APPROXIMATE INTERPROTON REMARK 3 DISTANCE RESTRAINTS; 64 DISTANCE RESTRAINTS FOR 32 REMARK 3 HYDROGEN BONDS; 257 TORSION ANGLE (84 PHI, 78 PSI, 60 CHI1 REMARK 3 29 CHI2 AND 6 CHI3) RESTRAINTS; 66 THREE-BOND HN-HA REMARK 3 COUPLING CONSTANT RESTRAINTS; 165 (87 CALPHA AND 78 CBETA) REMARK 3 13C SHIFT RESTRAINTS; 44 1H METHYL PROTON CHEMICAL SHIFTS; REMARK 3 259 DIPOLAR COUPLINGS (76 N-H, 76 CALPHA-C', 55 N-C' REMARK 3 AND 52 HN-C'). REMARK 3 (B) 48 INTERSUBUNIT INTERPROTON DISTANCE RESTRAINTS. REMARK 3 REMARK 3 RMS DEVIATIONS. REMARK 3 BOND LENGTHS : 0.004931 REMARK 3 BOND ANGLES : 0.543143 REMARK 3 IMPROPER ANGLES : 0.551732 REMARK 3 CDIH : 0.128297 REMARK 3 NOE : 0.022087 REMARK 3 COUP : 0.943946 REMARK 3 13C SHIFTS RMS CA, CB (PPM): 1.04812, 1.20411 REMARK 3 JHNHA RMS (HZ): 0.943946 0 REMARK 3 DIPOLAR COUPLINGS NH CACO NCO HNCO REMARK 3 RMS DIPOLAR (HZ): 0.421677 1.31903 0.483471 1.20095 REMARK 3 1H METHYL SHIFTS: 0.118116 REMARK 3 REMARK 3 THE STRUCTURE IN THIS ENTRY IS THE RESTRAINED REGULARIZED REMARK 3 MEAN STRUCTURE AND THE LAST NUMERIC COLUMN REPRESENTS THE REMARK 3 RMS OF THE 40 INDIVIDUAL SIMULATED ANNEALING STRUCTURES REMARK 3 FOUND IN PDB ENTRY 2EZY ABOUT THE MEAN COORDINATE REMARK 3 POSITIONS. THE LAST NUMERIC COLUMN IN THE INDIVIDUAL SA REMARK 3 STRUCTURES HAS NO MEANING. REMARK 4 REMARK 4 2EZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178070. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX600; DMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS MODIFIED MODIFIED REMARK 210 METHOD USED : SEE REMARK 3 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : REGULARIZED MEAN STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE IN THIS ENTRY IS THE RESTRAINED REGULARIZED REMARK 210 MEAN STRUCTURE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 159.98 -41.59 REMARK 500 PHE A 39 74.47 -105.21 REMARK 500 CYS A 67 -30.02 -131.52 REMARK 500 PRO B 14 159.98 -41.51 REMARK 500 PHE B 39 74.55 -105.26 REMARK 500 CYS B 67 -30.05 -131.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 2EZX A 1 89 UNP O75531 BAF_HUMAN 1 89 DBREF 2EZX B 1 89 UNP O75531 BAF_HUMAN 1 89 SEQRES 1 A 89 MET THR THR SER GLN LYS HIS ARG ASP PHE VAL ALA GLU SEQRES 2 A 89 PRO MET GLY GLU LYS PRO VAL GLY SER LEU ALA GLY ILE SEQRES 3 A 89 GLY GLU VAL LEU GLY LYS LYS LEU GLU GLU ARG GLY PHE SEQRES 4 A 89 ASP LYS ALA TYR VAL VAL LEU GLY GLN PHE LEU VAL LEU SEQRES 5 A 89 LYS LYS ASP GLU ASP LEU PHE ARG GLU TRP LEU LYS ASP SEQRES 6 A 89 THR CYS GLY ALA ASN ALA LYS GLN SER ARG ASP CYS PHE SEQRES 7 A 89 GLY CYS LEU ARG GLU TRP CYS ASP ALA PHE LEU SEQRES 1 B 89 MET THR THR SER GLN LYS HIS ARG ASP PHE VAL ALA GLU SEQRES 2 B 89 PRO MET GLY GLU LYS PRO VAL GLY SER LEU ALA GLY ILE SEQRES 3 B 89 GLY GLU VAL LEU GLY LYS LYS LEU GLU GLU ARG GLY PHE SEQRES 4 B 89 ASP LYS ALA TYR VAL VAL LEU GLY GLN PHE LEU VAL LEU SEQRES 5 B 89 LYS LYS ASP GLU ASP LEU PHE ARG GLU TRP LEU LYS ASP SEQRES 6 B 89 THR CYS GLY ALA ASN ALA LYS GLN SER ARG ASP CYS PHE SEQRES 7 B 89 GLY CYS LEU ARG GLU TRP CYS ASP ALA PHE LEU HELIX 1 1 GLN A 5 ALA A 12 1 8 HELIX 2 2 VAL A 20 SER A 22 5 3 HELIX 3 3 GLU A 28 ARG A 37 1 10 HELIX 4 4 ALA A 42 VAL A 51 1 10 HELIX 5 5 GLU A 56 CYS A 67 1 12 HELIX 6 6 ALA A 71 ALA A 87 1 17 HELIX 7 7 GLN B 5 ALA B 12 1 8 HELIX 8 8 VAL B 20 SER B 22 5 3 HELIX 9 9 GLU B 28 ARG B 37 1 10 HELIX 10 10 ALA B 42 VAL B 51 1 10 HELIX 11 11 GLU B 56 CYS B 67 1 12 HELIX 12 12 ALA B 71 ALA B 87 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000