HEADER TRANSFERASE 14-NOV-05 2F0Y TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN FARNESYLTRANSFERASE TITLE 2 COMPLEXED WITH FARNESYL DIPHOSPHATE AND HYDANTOIN TITLE 3 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN COMPND 3 FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE I ALPHA COMPND 4 SUBUNIT; COMPND 5 CHAIN: A; COMPND 6 SYNONYM: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT, RAS COMPND 7 PROTEINS PRENYLTRANSFERASE ALPHA, FTASE-ALPHA, TYPE I COMPND 8 PROTEIN GERANYL-GERANYLTRANSFERASE ALPHA SUBUNIT, GGTASE-I- COMPND 9 ALPHA; COMPND 10 EC: 2.5.1.58, 2.5.1.59; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT; COMPND 14 CHAIN: B; COMPND 15 SYNONYM: CAAX FARNESYLTRANSFERASE BETA SUBUNIT, RAS COMPND 16 PROTEINS PRENYLTRANSFERASE BETA, FTASE-BETA; COMPND 17 EC: 2.5.1.58; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FARNESYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.H.KIM,J.LEE,J.KIM REVDAT 2 24-FEB-09 2F0Y 1 VERSN REVDAT 1 14-NOV-06 2F0Y 0 JRNL AUTH J.LEE,J.KIM,J.S.KOH,H.H.CHUNG,S.RO,K.H.KIM JRNL TITL HYDANTOIN DERIVATIVES AS NON-PEPRIDIC INHIBITORS JRNL TITL 2 OF RAS FARNESYL TRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.60 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.32 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.42 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.91 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F0Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-05. REMARK 100 THE RCSB ID CODE IS RCSB035316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA AETATE, PH 5.1, 0.2M NACL, REMARK 280 10% ISOPROPYL ALCOHOL , PH 5.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.78900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.57800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.68350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.47250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.89450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE DIMER OF ALPHA AND BETA REMARK 300 SUBUNITS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 GLY A 8 REMARK 465 GLU A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 GLN A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 GLN A 21 REMARK 465 PRO A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 GLN A 25 REMARK 465 PRO A 26 REMARK 465 HIS A 27 REMARK 465 PRO A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 GLN A 32 REMARK 465 GLN A 33 REMARK 465 GLN A 34 REMARK 465 HIS A 35 REMARK 465 LYS A 36 REMARK 465 GLU A 37 REMARK 465 GLU A 38 REMARK 465 MET A 39 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 ALA A 43 REMARK 465 GLY A 44 REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 VAL A 47 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 MET A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 GLY A 54 REMARK 465 THR A 369 REMARK 465 GLU A 370 REMARK 465 ASN A 371 REMARK 465 ASP A 372 REMARK 465 SER A 373 REMARK 465 PRO A 374 REMARK 465 THR A 375 REMARK 465 ASN A 376 REMARK 465 VAL A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 PHE B 7 REMARK 465 THR B 8 REMARK 465 TYR B 9 REMARK 465 TYR B 10 REMARK 465 CYS B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 VAL B 18 REMARK 465 TRP B 19 REMARK 465 SER B 20 REMARK 465 PHE B 64 REMARK 465 ASN B 65 REMARK 465 HIS B 66 REMARK 465 LEU B 67 REMARK 465 VAL B 68 REMARK 465 PRO B 69 REMARK 465 GLY B 422 REMARK 465 PHE B 423 REMARK 465 GLU B 424 REMARK 465 GLU B 425 REMARK 465 LEU B 426 REMARK 465 LYS B 427 REMARK 465 ASP B 428 REMARK 465 GLU B 429 REMARK 465 THR B 430 REMARK 465 SER B 431 REMARK 465 ALA B 432 REMARK 465 GLU B 433 REMARK 465 PRO B 434 REMARK 465 ALA B 435 REMARK 465 THR B 436 REMARK 465 ASP B 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 -18.25 -46.08 REMARK 500 ALA A 70 -76.70 -54.23 REMARK 500 GLU A 71 -0.01 -47.08 REMARK 500 PRO A 86 166.96 -47.61 REMARK 500 VAL A 88 47.28 35.71 REMARK 500 ASP A 110 37.51 78.37 REMARK 500 GLU A 111 85.07 -66.75 REMARK 500 ASN A 127 82.13 -160.30 REMARK 500 ASP A 147 95.99 -65.63 REMARK 500 GLU A 185 -74.37 -49.69 REMARK 500 VAL A 209 -71.49 -44.00 REMARK 500 ASP A 217 -44.61 -29.42 REMARK 500 VAL A 243 -75.29 -50.67 REMARK 500 THR A 247 -84.86 -131.11 REMARK 500 GLN A 298 -8.53 -51.81 REMARK 500 LEU A 300 29.48 -72.78 REMARK 500 SER A 307 47.49 -25.77 REMARK 500 LEU A 323 4.29 -67.69 REMARK 500 GLN A 326 109.25 66.30 REMARK 500 ASN A 329 39.69 71.04 REMARK 500 GLU A 347 -38.64 -130.11 REMARK 500 ASP A 349 46.81 -151.99 REMARK 500 GLN A 364 -80.41 -88.03 REMARK 500 SER A 365 -68.17 -14.72 REMARK 500 ALA B 31 4.93 -68.38 REMARK 500 SER B 60 -74.15 -36.08 REMARK 500 SER B 61 -61.17 -22.42 REMARK 500 GLN B 74 54.01 -48.81 REMARK 500 ASP B 91 5.06 -69.27 REMARK 500 SER B 99 35.46 -140.34 REMARK 500 LEU B 114 6.52 -69.85 REMARK 500 ALA B 168 -76.20 -55.03 REMARK 500 ASP B 170 -4.87 -58.05 REMARK 500 PRO B 219 -34.50 -28.42 REMARK 500 PHE B 222 42.32 -103.01 REMARK 500 PHE B 284 -70.04 -87.43 REMARK 500 PHE B 302 -65.49 -106.16 REMARK 500 MET B 329 37.47 -63.08 REMARK 500 HIS B 331 97.21 -67.24 REMARK 500 ASP B 352 -72.56 -58.68 REMARK 500 SER B 378 80.38 153.18 REMARK 500 GLN B 417 38.00 -75.56 REMARK 500 PRO B 419 -160.04 -66.81 REMARK 500 VAL B 420 -62.98 -145.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1038 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH B1145 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B1181 DISTANCE = 5.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 297 OD2 REMARK 620 2 CYS B 299 SG 109.0 REMARK 620 3 HIS B 362 NE2 108.6 114.1 REMARK 620 4 3MN B 963 N5 91.6 110.2 120.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP B 1001 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3MN B 963 DBREF 2F0Y A 1 379 UNP P49354 PFTA_HUMAN 1 379 DBREF 2F0Y B 1 437 UNP P49356 PFTB_HUMAN 1 437 SEQRES 1 A 379 MET ALA ALA THR GLU GLY VAL GLY GLU ALA ALA GLN GLY SEQRES 2 A 379 GLY GLU PRO GLY GLN PRO ALA GLN PRO PRO PRO GLN PRO SEQRES 3 A 379 HIS PRO PRO PRO PRO GLN GLN GLN HIS LYS GLU GLU MET SEQRES 4 A 379 ALA ALA GLU ALA GLY GLU ALA VAL ALA SER PRO MET ASP SEQRES 5 A 379 ASP GLY PHE VAL SER LEU ASP SER PRO SER TYR VAL LEU SEQRES 6 A 379 TYR ARG ASP ARG ALA GLU TRP ALA ASP ILE ASP PRO VAL SEQRES 7 A 379 PRO GLN ASN ASP GLY PRO ASN PRO VAL VAL GLN ILE ILE SEQRES 8 A 379 TYR SER ASP LYS PHE ARG ASP VAL TYR ASP TYR PHE ARG SEQRES 9 A 379 ALA VAL LEU GLN ARG ASP GLU ARG SER GLU ARG ALA PHE SEQRES 10 A 379 LYS LEU THR ARG ASP ALA ILE GLU LEU ASN ALA ALA ASN SEQRES 11 A 379 TYR THR VAL TRP HIS PHE ARG ARG VAL LEU LEU LYS SER SEQRES 12 A 379 LEU GLN LYS ASP LEU HIS GLU GLU MET ASN TYR ILE THR SEQRES 13 A 379 ALA ILE ILE GLU GLU GLN PRO LYS ASN TYR GLN VAL TRP SEQRES 14 A 379 HIS HIS ARG ARG VAL LEU VAL GLU TRP LEU ARG ASP PRO SEQRES 15 A 379 SER GLN GLU LEU GLU PHE ILE ALA ASP ILE LEU ASN GLN SEQRES 16 A 379 ASP ALA LYS ASN TYR HIS ALA TRP GLN HIS ARG GLN TRP SEQRES 17 A 379 VAL ILE GLN GLU PHE LYS LEU TRP ASP ASN GLU LEU GLN SEQRES 18 A 379 TYR VAL ASP GLN LEU LEU LYS GLU ASP VAL ARG ASN ASN SEQRES 19 A 379 SER VAL TRP ASN GLN ARG TYR PHE VAL ILE SER ASN THR SEQRES 20 A 379 THR GLY TYR ASN ASP ARG ALA VAL LEU GLU ARG GLU VAL SEQRES 21 A 379 GLN TYR THR LEU GLU MET ILE LYS LEU VAL PRO HIS ASN SEQRES 22 A 379 GLU SER ALA TRP ASN TYR LEU LYS GLY ILE LEU GLN ASP SEQRES 23 A 379 ARG GLY LEU SER LYS TYR PRO ASN LEU LEU ASN GLN LEU SEQRES 24 A 379 LEU ASP LEU GLN PRO SER HIS SER SER PRO TYR LEU ILE SEQRES 25 A 379 ALA PHE LEU VAL ASP ILE TYR GLU ASP MET LEU GLU ASN SEQRES 26 A 379 GLN CYS ASP ASN LYS GLU ASP ILE LEU ASN LYS ALA LEU SEQRES 27 A 379 GLU LEU CYS GLU ILE LEU ALA LYS GLU LYS ASP THR ILE SEQRES 28 A 379 ARG LYS GLU TYR TRP ARG TYR ILE GLY ARG SER LEU GLN SEQRES 29 A 379 SER LYS HIS SER THR GLU ASN ASP SER PRO THR ASN VAL SEQRES 30 A 379 GLN GLN SEQRES 1 B 437 MET ALA SER PRO SER SER PHE THR TYR TYR CYS PRO PRO SEQRES 2 B 437 SER SER SER PRO VAL TRP SER GLU PRO LEU TYR SER LEU SEQRES 3 B 437 ARG PRO GLU HIS ALA ARG GLU ARG LEU GLN ASP ASP SER SEQRES 4 B 437 VAL GLU THR VAL THR SER ILE GLU GLN ALA LYS VAL GLU SEQRES 5 B 437 GLU LYS ILE GLN GLU VAL PHE SER SER TYR LYS PHE ASN SEQRES 6 B 437 HIS LEU VAL PRO ARG LEU VAL LEU GLN ARG GLU LYS HIS SEQRES 7 B 437 PHE HIS TYR LEU LYS ARG GLY LEU ARG GLN LEU THR ASP SEQRES 8 B 437 ALA TYR GLU CYS LEU ASP ALA SER ARG PRO TRP LEU CYS SEQRES 9 B 437 TYR TRP ILE LEU HIS SER LEU GLU LEU LEU ASP GLU PRO SEQRES 10 B 437 ILE PRO GLN ILE VAL ALA THR ASP VAL CYS GLN PHE LEU SEQRES 11 B 437 GLU LEU CYS GLN SER PRO GLU GLY GLY PHE GLY GLY GLY SEQRES 12 B 437 PRO GLY GLN TYR PRO HIS LEU ALA PRO THR TYR ALA ALA SEQRES 13 B 437 VAL ASN ALA LEU CYS ILE ILE GLY THR GLU GLU ALA TYR SEQRES 14 B 437 ASP ILE ILE ASN ARG GLU LYS LEU LEU GLN TYR LEU TYR SEQRES 15 B 437 SER LEU LYS GLN PRO ASP GLY SER PHE LEU MET HIS VAL SEQRES 16 B 437 GLY GLY GLU VAL ASP VAL ARG SER ALA TYR CYS ALA ALA SEQRES 17 B 437 SER VAL ALA SER LEU THR ASN ILE ILE THR PRO ASP LEU SEQRES 18 B 437 PHE GLU GLY THR ALA GLU TRP ILE ALA ARG CYS GLN ASN SEQRES 19 B 437 TRP GLU GLY GLY ILE GLY GLY VAL PRO GLY MET GLU ALA SEQRES 20 B 437 HIS GLY GLY TYR THR PHE CYS GLY LEU ALA ALA LEU VAL SEQRES 21 B 437 ILE LEU LYS ARG GLU ARG SER LEU ASN LEU LYS SER LEU SEQRES 22 B 437 LEU GLN TRP VAL THR SER ARG GLN MET ARG PHE GLU GLY SEQRES 23 B 437 GLY PHE GLN GLY ARG CYS ASN LYS LEU VAL ASP GLY CYS SEQRES 24 B 437 TYR SER PHE TRP GLN ALA GLY LEU LEU PRO LEU LEU HIS SEQRES 25 B 437 ARG ALA LEU HIS ALA GLN GLY ASP PRO ALA LEU SER MET SEQRES 26 B 437 SER HIS TRP MET PHE HIS GLN GLN ALA LEU GLN GLU TYR SEQRES 27 B 437 ILE LEU MET CYS CYS GLN CYS PRO ALA GLY GLY LEU LEU SEQRES 28 B 437 ASP LYS PRO GLY LYS SER ARG ASP PHE TYR HIS THR CYS SEQRES 29 B 437 TYR CYS LEU SER GLY LEU SER ILE ALA GLN HIS PHE GLY SEQRES 30 B 437 SER GLY ALA MET LEU HIS ASP VAL VAL LEU GLY VAL PRO SEQRES 31 B 437 GLU ASN ALA LEU GLN PRO THR HIS PRO VAL TYR ASN ILE SEQRES 32 B 437 GLY PRO ASP LYS VAL ILE GLN ALA THR THR TYR PHE LEU SEQRES 33 B 437 GLN LYS PRO VAL PRO GLY PHE GLU GLU LEU LYS ASP GLU SEQRES 34 B 437 THR SER ALA GLU PRO ALA THR ASP HET ZN B 501 1 HET FPP B1001 24 HET 3MN B 963 35 HETNAM ZN ZINC ION HETNAM FPP FARNESYL DIPHOSPHATE HETNAM 3MN 3-({3-[3-(1H-IMIDAZOL-1-YL)PROPYL]-5-METHYL-5-(1- HETNAM 2 3MN NAPHTHYL)-2,4-DIOXOIMIDAZOLIDIN-1-YL}METHYL) HETNAM 3 3MN BENZONITRILE FORMUL 3 ZN ZN 2+ FORMUL 4 FPP C15 H28 O7 P2 FORMUL 5 3MN C28 H25 N5 O2 FORMUL 6 HOH *409(H2 O) HELIX 1 1 ARG A 69 ALA A 73 5 5 HELIX 2 2 SER A 93 ASP A 110 1 18 HELIX 3 3 SER A 113 ASN A 127 1 15 HELIX 4 4 ASN A 130 LEU A 144 1 15 HELIX 5 5 ASP A 147 GLN A 162 1 16 HELIX 6 6 ASN A 165 ARG A 180 1 16 HELIX 7 7 GLN A 184 ASP A 196 1 13 HELIX 8 8 ASN A 199 PHE A 213 1 15 HELIX 9 9 LEU A 215 ASP A 217 5 3 HELIX 10 10 ASN A 218 ASP A 230 1 13 HELIX 11 11 ASN A 233 ASN A 246 1 14 HELIX 12 12 ASP A 252 VAL A 270 1 19 HELIX 13 13 ASN A 273 GLN A 285 1 13 HELIX 14 14 ASP A 286 LYS A 291 5 6 HELIX 15 15 TYR A 292 LEU A 300 1 9 HELIX 16 16 LEU A 302 SER A 307 1 6 HELIX 17 17 SER A 308 GLN A 326 1 19 HELIX 18 18 ASN A 329 GLU A 347 1 19 HELIX 19 19 ASP A 349 ILE A 351 5 3 HELIX 20 20 ARG A 352 LYS A 366 1 15 HELIX 21 21 PRO B 28 GLU B 33 5 6 HELIX 22 22 THR B 42 LYS B 63 1 22 HELIX 23 23 GLN B 74 ARG B 87 1 14 HELIX 24 24 THR B 90 ALA B 98 5 9 HELIX 25 25 SER B 99 LEU B 114 1 16 HELIX 26 26 PRO B 119 GLN B 134 1 16 HELIX 27 27 HIS B 149 GLY B 164 1 16 HELIX 28 28 THR B 165 ASP B 170 1 6 HELIX 29 29 ASN B 173 LYS B 185 1 13 HELIX 30 30 ASP B 200 THR B 214 1 15 HELIX 31 31 GLY B 224 CYS B 232 1 9 HELIX 32 32 HIS B 248 LYS B 263 1 16 HELIX 33 33 ARG B 264 LEU B 268 5 5 HELIX 34 34 ASN B 269 ARG B 280 1 12 HELIX 35 35 CYS B 299 GLN B 304 1 6 HELIX 36 36 GLY B 306 ALA B 317 1 12 HELIX 37 37 HIS B 331 CYS B 343 1 13 HELIX 38 38 ASP B 359 HIS B 375 1 17 HELIX 39 39 GLY B 404 GLN B 417 1 14 SHEET 1 A 2 GLN A 89 ILE A 90 0 SHEET 2 A 2 GLN B 88 LEU B 89 1 O LEU B 89 N GLN A 89 SHEET 1 B 2 PHE B 288 GLN B 289 0 SHEET 2 B 2 VAL B 296 ASP B 297 -1 O ASP B 297 N PHE B 288 LINK OD2 ASP B 297 ZN ZN B 501 1555 1555 1.99 LINK SG CYS B 299 ZN ZN B 501 1555 1555 2.35 LINK NE2 HIS B 362 ZN ZN B 501 1555 1555 2.27 LINK ZN ZN B 501 N5 3MN B 963 1555 1555 2.26 SITE 1 AC1 4 ASP B 297 CYS B 299 HIS B 362 3MN B 963 SITE 1 AC2 18 LYS A 164 TYR A 166 HIS A 201 ARG B 202 SITE 2 AC2 18 HIS B 248 GLY B 250 TYR B 251 CYS B 254 SITE 3 AC2 18 ARG B 291 LYS B 294 TYR B 300 TRP B 303 SITE 4 AC2 18 3MN B 963 HOH B1011 HOH B1014 HOH B1024 SITE 5 AC2 18 HOH B1142 HOH B1186 SITE 1 AC3 11 TYR B 93 LEU B 96 SER B 99 TRP B 102 SITE 2 AC3 11 ASP B 297 TYR B 300 ASP B 359 PHE B 360 SITE 3 AC3 11 TYR B 361 ZN B 501 FPP B1001 CRYST1 171.888 171.888 71.367 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005818 0.003359 0.000000 0.00000 SCALE2 0.000000 0.006718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014012 0.00000