HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-NOV-05 2F1E TITLE SOLUTION STRUCTURE OF APAG PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN APAG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_TAXID: 92829; SOURCE 4 STRAIN: PV. CITRI; SOURCE 5 GENE: APAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS APAG PROTEIN, XANTHOMONAS AXONOPODIS PV.CITRI, STRUCTURAL GENOMICS, KEYWDS 2 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.CONTESSA,T.A.PERTINHEZ,A.SPISNI,M.PACI,C.S.FARAH,D.O.CICERO REVDAT 4 09-MAR-22 2F1E 1 REMARK REVDAT 3 24-FEB-09 2F1E 1 VERSN REVDAT 2 27-MAR-07 2F1E 1 JRNL REVDAT 1 24-OCT-06 2F1E 0 JRNL AUTH D.O.CICERO,G.M.CONTESSA,T.A.PERTINHEZ,M.GALLO,A.M.KATSUYAMA, JRNL AUTH 2 M.PACI,C.S.FARAH,A.SPISNI JRNL TITL SOLUTION STRUCTURE OF APAG FROM XANTHOMONAS AXONOPODIS PV. JRNL TITL 2 CITRI REVEALS A FIBRONECTIN-3 FOLD. JRNL REF PROTEINS V. 67 490 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17256769 JRNL DOI 10.1002/PROT.21277 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, X-PLOR REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F1E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035331. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 0.2; 0.2 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 40 MM NAH2PO4, 50 MM NACL, 0.5 REMARK 210 MM APAG PROTEIN, 5% D2O; 40 MM REMARK 210 NAH2PO4, 50 MM NACL, 0.5 MM APAG REMARK 210 PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 400 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 122 REMARK 465 PRO A 123 REMARK 465 ARG A 124 REMARK 465 THR A 125 REMARK 465 LEU A 126 REMARK 465 HIS A 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 18 79.62 -115.40 REMARK 500 1 GLU A 67 -158.28 -66.42 REMARK 500 1 GLN A 73 74.65 -113.51 REMARK 500 1 TRP A 75 77.33 -103.09 REMARK 500 1 ALA A 116 155.69 -49.82 REMARK 500 2 GLN A 53 77.42 -116.88 REMARK 500 2 GLN A 73 72.97 -117.55 REMARK 500 2 TRP A 75 76.03 -101.45 REMARK 500 2 ALA A 116 171.29 -48.42 REMARK 500 3 GLN A 53 79.15 -116.09 REMARK 500 3 GLN A 73 75.55 -115.42 REMARK 500 3 TRP A 75 75.98 -101.34 REMARK 500 4 GLN A 53 78.28 -116.13 REMARK 500 4 GLN A 73 74.92 -116.08 REMARK 500 4 TRP A 75 77.33 -100.34 REMARK 500 5 LEU A 18 79.79 -116.18 REMARK 500 5 GLN A 53 77.19 -116.54 REMARK 500 5 GLU A 67 -157.32 -65.24 REMARK 500 5 GLN A 73 74.83 -113.84 REMARK 500 5 TRP A 75 76.36 -103.80 REMARK 500 6 GLN A 73 72.95 -118.56 REMARK 500 6 ALA A 116 161.23 -47.36 REMARK 500 7 GLN A 73 72.85 -116.14 REMARK 500 7 TRP A 75 76.54 -101.87 REMARK 500 7 ALA A 116 167.05 -48.61 REMARK 500 8 LEU A 18 78.05 -116.01 REMARK 500 8 GLN A 53 77.14 -115.51 REMARK 500 8 GLN A 73 75.57 -115.37 REMARK 500 8 TRP A 75 75.89 -100.82 REMARK 500 8 GLU A 93 -14.07 87.72 REMARK 500 8 ALA A 116 161.66 -47.58 REMARK 500 9 GLN A 73 73.15 -115.75 REMARK 500 9 TRP A 75 77.17 -103.43 REMARK 500 10 GLN A 53 77.33 -116.33 REMARK 500 10 GLN A 73 72.19 -117.86 REMARK 500 10 TRP A 75 75.32 -103.75 REMARK 500 10 ALA A 116 172.81 -49.61 REMARK 500 11 GLN A 53 75.98 -115.48 REMARK 500 11 GLN A 73 73.05 -115.24 REMARK 500 11 TRP A 75 76.88 -102.39 REMARK 500 12 GLN A 53 75.85 -115.38 REMARK 500 12 GLN A 73 75.12 -115.22 REMARK 500 12 TRP A 75 77.57 -103.14 REMARK 500 13 GLN A 73 72.24 -119.06 REMARK 500 14 GLN A 53 78.76 -115.75 REMARK 500 14 GLN A 73 75.70 -114.90 REMARK 500 14 TRP A 75 76.53 -103.36 REMARK 500 14 ALA A 116 159.13 -48.30 REMARK 500 15 GLN A 53 78.49 -115.84 REMARK 500 15 GLN A 73 74.15 -114.97 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 6 0.29 SIDE CHAIN REMARK 500 1 ARG A 8 0.30 SIDE CHAIN REMARK 500 1 ARG A 16 0.28 SIDE CHAIN REMARK 500 1 ARG A 28 0.29 SIDE CHAIN REMARK 500 1 ARG A 36 0.28 SIDE CHAIN REMARK 500 1 ARG A 46 0.28 SIDE CHAIN REMARK 500 1 ARG A 50 0.32 SIDE CHAIN REMARK 500 1 ARG A 60 0.30 SIDE CHAIN REMARK 500 1 ARG A 77 0.23 SIDE CHAIN REMARK 500 2 ARG A 6 0.31 SIDE CHAIN REMARK 500 2 ARG A 8 0.26 SIDE CHAIN REMARK 500 2 ARG A 16 0.31 SIDE CHAIN REMARK 500 2 ARG A 28 0.28 SIDE CHAIN REMARK 500 2 ARG A 36 0.30 SIDE CHAIN REMARK 500 2 ARG A 46 0.26 SIDE CHAIN REMARK 500 2 ARG A 50 0.24 SIDE CHAIN REMARK 500 2 ARG A 60 0.22 SIDE CHAIN REMARK 500 2 ARG A 77 0.30 SIDE CHAIN REMARK 500 3 ARG A 6 0.31 SIDE CHAIN REMARK 500 3 ARG A 8 0.32 SIDE CHAIN REMARK 500 3 ARG A 16 0.31 SIDE CHAIN REMARK 500 3 ARG A 28 0.29 SIDE CHAIN REMARK 500 3 ARG A 36 0.30 SIDE CHAIN REMARK 500 3 ARG A 46 0.26 SIDE CHAIN REMARK 500 3 ARG A 50 0.24 SIDE CHAIN REMARK 500 3 ARG A 60 0.27 SIDE CHAIN REMARK 500 3 ARG A 77 0.22 SIDE CHAIN REMARK 500 4 ARG A 6 0.28 SIDE CHAIN REMARK 500 4 ARG A 8 0.31 SIDE CHAIN REMARK 500 4 ARG A 16 0.30 SIDE CHAIN REMARK 500 4 ARG A 28 0.31 SIDE CHAIN REMARK 500 4 ARG A 36 0.23 SIDE CHAIN REMARK 500 4 ARG A 46 0.28 SIDE CHAIN REMARK 500 4 ARG A 50 0.32 SIDE CHAIN REMARK 500 4 ARG A 60 0.22 SIDE CHAIN REMARK 500 4 ARG A 77 0.30 SIDE CHAIN REMARK 500 5 ARG A 6 0.31 SIDE CHAIN REMARK 500 5 ARG A 8 0.31 SIDE CHAIN REMARK 500 5 ARG A 16 0.28 SIDE CHAIN REMARK 500 5 ARG A 28 0.27 SIDE CHAIN REMARK 500 5 ARG A 36 0.32 SIDE CHAIN REMARK 500 5 ARG A 46 0.29 SIDE CHAIN REMARK 500 5 ARG A 50 0.30 SIDE CHAIN REMARK 500 5 ARG A 60 0.30 SIDE CHAIN REMARK 500 5 ARG A 77 0.25 SIDE CHAIN REMARK 500 6 ARG A 6 0.30 SIDE CHAIN REMARK 500 6 ARG A 8 0.30 SIDE CHAIN REMARK 500 6 ARG A 16 0.31 SIDE CHAIN REMARK 500 6 ARG A 28 0.29 SIDE CHAIN REMARK 500 6 ARG A 36 0.29 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 180 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2F1E A 1 127 UNP Q8PP26 APAG_XANAC 1 127 SEQRES 1 A 127 MET GLN ASP ASP PRO ARG TYR ARG VAL GLU VAL GLU VAL SEQRES 2 A 127 SER PRO ARG PHE LEU ALA HIS GLN SER THR PRO ASP GLU SEQRES 3 A 127 GLY ARG TYR ALA PHE ALA TYR SER ILE ARG ILE GLN ASN SEQRES 4 A 127 ALA GLY ALA VAL PRO ALA ARG LEU VAL ALA ARG HIS TRP SEQRES 5 A 127 GLN ILE THR ASP GLY ASN GLY ARG THR GLU GLN VAL ASP SEQRES 6 A 127 GLY GLU GLY VAL VAL GLY GLU GLN PRO TRP LEU ARG PRO SEQRES 7 A 127 GLY GLU ALA PHE HIS TYR THR SER GLY VAL LEU LEU GLU SEQRES 8 A 127 THR GLU GLN GLY GLN MET GLN GLY HIS TYR ASP MET VAL SEQRES 9 A 127 ALA ASP ASP GLY THR GLU PHE ILE ALA PRO ILE ALA ALA SEQRES 10 A 127 PHE VAL LEU SER VAL PRO ARG THR LEU HIS HELIX 1 1 THR A 23 GLY A 27 5 5 SHEET 1 A 3 VAL A 9 PHE A 17 0 SHEET 2 A 3 TYR A 29 ASN A 39 -1 O GLN A 38 N GLU A 10 SHEET 3 A 3 ALA A 81 LEU A 90 -1 O PHE A 82 N ILE A 37 SHEET 1 B 3 THR A 61 GLY A 66 0 SHEET 2 B 3 ALA A 45 ASP A 56 -1 N ILE A 54 O GLU A 62 SHEET 3 B 3 TRP A 75 LEU A 76 -1 O LEU A 76 N ALA A 45 SHEET 1 C 4 THR A 61 GLY A 66 0 SHEET 2 C 4 ALA A 45 ASP A 56 -1 N ILE A 54 O GLU A 62 SHEET 3 C 4 GLY A 95 ALA A 105 -1 O GLN A 98 N GLN A 53 SHEET 4 C 4 GLU A 110 LEU A 120 -1 O ILE A 115 N GLY A 99 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1