HEADER METAL BINDING PROTEIN 15-NOV-05 2F22 TITLE CRYSTAL STRUCTURE OF A PUTATIVE DNA DAMAGE-INDUCABLE (DINB) PROTEIN TITLE 2 (BH3987) FROM BACILLUS HALODURANS AT 1.42 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH3987; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 86665; SOURCE 4 GENE: 10176612; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PUTATIVE DNA DAMAGE-INDUCABLE (DINB) PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 13-JUL-11 2F22 1 VERSN REVDAT 3 28-JUL-10 2F22 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2F22 1 VERSN REVDAT 1 20-DEC-05 2F22 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF BH3987 FROM BACILLUS HALODURANS AT 1.42 JRNL TITL 2 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 55316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2955 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2305 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2520 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1754 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3433 ; 1.432 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4324 ; 1.135 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 5.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;34.812 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 499 ;13.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.659 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2799 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 498 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 553 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1802 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1209 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1219 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 302 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.310 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.095 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.045 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1496 ; 1.223 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 610 ; 0.351 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2439 ; 2.127 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1062 ; 3.832 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 969 ; 5.339 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6106 4.1964 20.2861 REMARK 3 T TENSOR REMARK 3 T11: 0.0095 T22: 0.0176 REMARK 3 T33: 0.0110 T12: -0.0073 REMARK 3 T13: 0.0098 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.5585 L22: 1.4900 REMARK 3 L33: 0.7245 L12: -0.2065 REMARK 3 L13: -0.1544 L23: 0.4539 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0132 S13: 0.0067 REMARK 3 S21: -0.0052 S22: -0.0116 S23: 0.0028 REMARK 3 S31: -0.0054 S32: -0.0035 S33: 0.0045 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9203 -4.0342 14.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: 0.0245 REMARK 3 T33: 0.0358 T12: -0.0090 REMARK 3 T13: 0.0030 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.7147 L22: 2.2382 REMARK 3 L33: 2.6559 L12: -0.2396 REMARK 3 L13: 0.1308 L23: 0.7073 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: 0.0198 S13: 0.0116 REMARK 3 S21: 0.0253 S22: 0.0198 S23: -0.0307 REMARK 3 S31: 0.0909 S32: 0.0462 S33: -0.0722 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9094 8.9246 18.7630 REMARK 3 T TENSOR REMARK 3 T11: -0.0073 T22: 0.0233 REMARK 3 T33: 0.0137 T12: -0.0008 REMARK 3 T13: 0.0093 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.9356 L22: 2.5269 REMARK 3 L33: 2.8390 L12: 0.6390 REMARK 3 L13: 0.5071 L23: 1.5834 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0019 S13: 0.0115 REMARK 3 S21: 0.0153 S22: -0.0634 S23: 0.0820 REMARK 3 S31: -0.0246 S32: -0.0886 S33: 0.0500 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 48 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7213 13.7296 15.9002 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0251 REMARK 3 T33: 0.0316 T12: 0.0097 REMARK 3 T13: 0.0039 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.6679 L22: 1.6673 REMARK 3 L33: 1.3661 L12: 0.0051 REMARK 3 L13: -0.2467 L23: 0.9858 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0043 S13: 0.0260 REMARK 3 S21: 0.0074 S22: 0.0026 S23: -0.0676 REMARK 3 S31: 0.0209 S32: -0.0167 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 41.3153 4.2039 7.6074 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0738 REMARK 3 T33: 0.0514 T12: 0.0088 REMARK 3 T13: 0.0357 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.5435 L22: 4.0584 REMARK 3 L33: 1.8935 L12: 1.2602 REMARK 3 L13: -0.1519 L23: -0.2753 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0436 S13: -0.1140 REMARK 3 S21: -0.0877 S22: 0.0035 S23: -0.1411 REMARK 3 S31: -0.0367 S32: -0.0417 S33: -0.0055 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1868 13.2832 17.3402 REMARK 3 T TENSOR REMARK 3 T11: -0.0004 T22: 0.0253 REMARK 3 T33: 0.0159 T12: -0.0024 REMARK 3 T13: 0.0107 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.5179 L22: 5.9491 REMARK 3 L33: 0.9685 L12: -0.3471 REMARK 3 L13: -0.1996 L23: 1.4692 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.0143 S13: -0.0100 REMARK 3 S21: 0.0189 S22: -0.0160 S23: -0.1355 REMARK 3 S31: -0.0147 S32: -0.0215 S33: -0.0150 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. NI ATOMS MODELED BASED ON ANOMALOUS AND REMARK 3 DIFFERENCE MAPS. REMARK 4 REMARK 4 2F22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-05. REMARK 100 THE RCSB ID CODE IS RCSB035355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 24.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : 0.48400 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M (NH4)2 TARTRATE, 20.0% PEG-3350, REMARK 280 NO BUFFER, PH 6.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.67900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.07600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.85250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.07600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.67900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.85250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 142 REMARK 465 MSE A 143 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 LYS B 96 CE NZ REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 86 O HOH A 346 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 MSE B 1 15.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 342 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH B 225 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH B 284 DISTANCE = 5.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 144 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 220 O REMARK 620 2 HOH A 195 O 73.6 REMARK 620 3 HIS A 118 NE2 89.2 82.4 REMARK 620 4 HIS A 114 NE2 166.1 93.5 94.2 REMARK 620 5 HIS A 42 NE2 85.8 159.3 99.0 106.9 REMARK 620 6 HOH A 181 O 72.0 66.7 147.1 98.5 105.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 145 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 368 O REMARK 620 2 ASP A 74 OD1 171.6 REMARK 620 3 HOH B 232 O 103.0 73.5 REMARK 620 4 HOH B 235 O 98.8 89.4 120.7 REMARK 620 5 ASP A 74 O 109.7 65.4 109.6 113.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 144 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 42 NE2 REMARK 620 2 HOH B 196 O 89.0 REMARK 620 3 HIS B 118 NE2 96.5 93.3 REMARK 620 4 HOH B 195 O 94.3 75.7 164.5 REMARK 620 5 HOH B 192 O 164.0 75.1 86.2 80.5 REMARK 620 6 HIS B 114 NE2 101.5 166.7 93.5 95.2 94.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 145 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 359078 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2F22 A 1 143 UNP Q9RC77 Q9RC77_BACHD 1 143 DBREF 2F22 B 1 143 UNP Q9RC77 Q9RC77_BACHD 1 143 SEQADV 2F22 GLY A 0 UNP Q9RC77 SEE REMARK 999 SEQADV 2F22 MSE A 1 UNP Q9RC77 MET 1 MODIFIED RESIDUE SEQADV 2F22 MSE A 12 UNP Q9RC77 MET 12 MODIFIED RESIDUE SEQADV 2F22 MSE A 80 UNP Q9RC77 MET 80 MODIFIED RESIDUE SEQADV 2F22 MSE A 97 UNP Q9RC77 MET 97 MODIFIED RESIDUE SEQADV 2F22 MSE A 105 UNP Q9RC77 MET 105 MODIFIED RESIDUE SEQADV 2F22 MSE A 143 UNP Q9RC77 MET 143 MODIFIED RESIDUE SEQADV 2F22 GLY B 0 UNP Q9RC77 SEE REMARK 999 SEQADV 2F22 MSE B 1 UNP Q9RC77 MET 1 MODIFIED RESIDUE SEQADV 2F22 MSE B 12 UNP Q9RC77 MET 12 MODIFIED RESIDUE SEQADV 2F22 MSE B 80 UNP Q9RC77 MET 80 MODIFIED RESIDUE SEQADV 2F22 MSE B 97 UNP Q9RC77 MET 97 MODIFIED RESIDUE SEQADV 2F22 MSE B 105 UNP Q9RC77 MET 105 MODIFIED RESIDUE SEQADV 2F22 MSE B 143 UNP Q9RC77 MET 143 MODIFIED RESIDUE SEQRES 1 A 144 GLY MSE ASP THR ASN GLY VAL LEU TYR ALA ALA ASN MSE SEQRES 2 A 144 THR ASN ALA LEU ALA LYS GLU ILE PRO GLU SER LYS TRP SEQRES 3 A 144 ASP ILE GLN LEU ILE PRO GLU LEU GLY THR LEU ARG LYS SEQRES 4 A 144 LEU PHE ILE HIS ILE VAL ARG VAL ARG ASP VAL TYR ARG SEQRES 5 A 144 ASP GLY LEU LYS THR GLY SER ILE LYS PHE PRO GLY ARG SEQRES 6 A 144 LEU ALA SER ASP GLU HIS ARG LEU LEU ASP GLU LEU GLU SEQRES 7 A 144 ARG SER MSE GLU GLU LEU VAL PHE GLU PHE LYS GLN THR SEQRES 8 A 144 THR PHE ASN SER ILE LYS MSE GLY GLU ASN TYR LEU SER SEQRES 9 A 144 ILE MSE GLU LEU LEU GLY THR VAL ILE GLN HIS GLU GLY SEQRES 10 A 144 ILE HIS GLN GLY GLN TYR TYR VAL ALA LEU LYS GLN SER SEQRES 11 A 144 GLY ILE ASN LEU PRO LYS GLN TRP VAL GLN ASP TRP HIS SEQRES 12 A 144 MSE SEQRES 1 B 144 GLY MSE ASP THR ASN GLY VAL LEU TYR ALA ALA ASN MSE SEQRES 2 B 144 THR ASN ALA LEU ALA LYS GLU ILE PRO GLU SER LYS TRP SEQRES 3 B 144 ASP ILE GLN LEU ILE PRO GLU LEU GLY THR LEU ARG LYS SEQRES 4 B 144 LEU PHE ILE HIS ILE VAL ARG VAL ARG ASP VAL TYR ARG SEQRES 5 B 144 ASP GLY LEU LYS THR GLY SER ILE LYS PHE PRO GLY ARG SEQRES 6 B 144 LEU ALA SER ASP GLU HIS ARG LEU LEU ASP GLU LEU GLU SEQRES 7 B 144 ARG SER MSE GLU GLU LEU VAL PHE GLU PHE LYS GLN THR SEQRES 8 B 144 THR PHE ASN SER ILE LYS MSE GLY GLU ASN TYR LEU SER SEQRES 9 B 144 ILE MSE GLU LEU LEU GLY THR VAL ILE GLN HIS GLU GLY SEQRES 10 B 144 ILE HIS GLN GLY GLN TYR TYR VAL ALA LEU LYS GLN SER SEQRES 11 B 144 GLY ILE ASN LEU PRO LYS GLN TRP VAL GLN ASP TRP HIS SEQRES 12 B 144 MSE MODRES 2F22 MSE A 1 MET SELENOMETHIONINE MODRES 2F22 MSE A 12 MET SELENOMETHIONINE MODRES 2F22 MSE A 80 MET SELENOMETHIONINE MODRES 2F22 MSE A 97 MET SELENOMETHIONINE MODRES 2F22 MSE A 105 MET SELENOMETHIONINE MODRES 2F22 MSE B 1 MET SELENOMETHIONINE MODRES 2F22 MSE B 12 MET SELENOMETHIONINE MODRES 2F22 MSE B 80 MET SELENOMETHIONINE MODRES 2F22 MSE B 97 MET SELENOMETHIONINE MODRES 2F22 MSE B 105 MET SELENOMETHIONINE MODRES 2F22 MSE B 143 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 12 18 HET MSE A 80 8 HET MSE A 97 8 HET MSE A 105 8 HET MSE B 1 13 HET MSE B 12 8 HET MSE B 80 8 HET MSE B 97 8 HET MSE B 105 8 HET MSE B 143 9 HET NI B 144 1 HET NI A 144 1 HET NA A 145 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 NI 2(NI 2+) FORMUL 5 NA NA 1+ FORMUL 6 HOH *412(H2 O) HELIX 1 1 THR A 3 ILE A 20 1 18 HELIX 2 2 PRO A 21 TRP A 25 5 5 HELIX 3 3 THR A 35 GLY A 57 1 23 HELIX 4 4 ARG A 71 THR A 90 1 20 HELIX 5 5 ILE A 104 GLY A 130 1 27 HELIX 6 6 PRO A 134 TRP A 141 1 8 HELIX 7 7 THR B 3 ILE B 20 1 18 HELIX 8 8 PRO B 21 TRP B 25 5 5 HELIX 9 9 THR B 35 GLY B 57 1 23 HELIX 10 10 ARG B 71 THR B 90 1 20 HELIX 11 11 ILE B 104 GLY B 130 1 27 HELIX 12 12 PRO B 134 HIS B 142 1 9 SHEET 1 A 3 SER A 58 ILE A 59 0 SHEET 2 A 3 SER A 94 MSE A 97 1 O LYS A 96 N ILE A 59 SHEET 3 A 3 ASN A 100 SER A 103 -1 O ASN A 100 N MSE A 97 SHEET 1 B 3 SER B 58 ILE B 59 0 SHEET 2 B 3 SER B 94 MSE B 97 1 O LYS B 96 N ILE B 59 SHEET 3 B 3 ASN B 100 SER B 103 -1 O ASN B 100 N MSE B 97 LINK C AGLY A 0 N MSE A 1 1555 1555 1.33 LINK C BGLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C ASN A 11 N MSE A 12 1555 1555 1.32 LINK C MSE A 12 N THR A 13 1555 1555 1.31 LINK C SER A 79 N MSE A 80 1555 1555 1.32 LINK C MSE A 80 N GLU A 81 1555 1555 1.34 LINK C LYS A 96 N MSE A 97 1555 1555 1.32 LINK C MSE A 97 N GLY A 98 1555 1555 1.33 LINK C ILE A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N GLU A 106 1555 1555 1.34 LINK NI NI A 144 O HOH A 220 1555 1555 2.38 LINK NI NI A 144 O HOH A 195 1555 1555 2.40 LINK NI NI A 144 NE2 HIS A 118 1555 1555 2.01 LINK NI NI A 144 NE2 HIS A 114 1555 1555 2.05 LINK NI NI A 144 NE2 HIS A 42 1555 1555 2.09 LINK NI NI A 144 O HOH A 181 1555 1555 2.04 LINK NA NA A 145 O HOH A 368 1555 1555 2.10 LINK NA NA A 145 OD1BASP A 74 1555 1555 2.10 LINK C MSE B 1 N ASP B 2 1555 1555 1.33 LINK C ASN B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N THR B 13 1555 1555 1.32 LINK C SER B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N GLU B 81 1555 1555 1.33 LINK C LYS B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N GLY B 98 1555 1555 1.33 LINK C ILE B 104 N MSE B 105 1555 1555 1.33 LINK C MSE B 105 N GLU B 106 1555 1555 1.32 LINK C HIS B 142 N MSE B 143 1555 1555 1.33 LINK NI NI B 144 NE2 HIS B 42 1555 1555 2.08 LINK NI NI B 144 O HOH B 196 1555 1555 2.19 LINK NI NI B 144 NE2 HIS B 118 1555 1555 1.98 LINK NI NI B 144 O HOH B 195 1555 1555 2.13 LINK NI NI B 144 O HOH B 192 1555 1555 2.28 LINK NI NI B 144 NE2 HIS B 114 1555 1555 2.06 LINK NA NA A 145 O HOH B 232 1555 3645 2.43 LINK NA NA A 145 O HOH B 235 1555 3645 2.36 LINK O ASP A 74 NA NA A 145 1555 1555 2.93 CISPEP 1 PHE A 61 PRO A 62 0 2.45 CISPEP 2 PHE B 61 PRO B 62 0 9.37 SITE 1 AC1 6 HIS B 42 HIS B 114 HIS B 118 HOH B 192 SITE 2 AC1 6 HOH B 195 HOH B 196 SITE 1 AC2 6 HIS A 42 HIS A 114 HIS A 118 HOH A 181 SITE 2 AC2 6 HOH A 195 HOH A 220 SITE 1 AC3 5 ASP A 74 HOH A 368 LYS B 24 HOH B 232 SITE 2 AC3 5 HOH B 235 CRYST1 49.358 77.705 80.152 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012480 0.00000