HEADER DNA BINDING PROTEIN/STRUCTURAL GENOMICS 16-NOV-05 2F2E TITLE CRYSTAL STRUCTURE OF PA1607, A PUTATIVE TRANSCRIPTION FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA1607; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PA1607; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15-MODIFIED KEYWDS TRANSCRIPTION FACTOR, HELIX-TRUN-HELIX, APC5613, STRUCTURAL GENOMICS, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, DNA BINDING PROTEIN-STRUCTURAL GENOMICS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.SIEMINSKA,X.XU,H.ZHENG,V.LUNIN,M.CUFF,A.JOACHIMIAK,A.EDWARDS, AUTHOR 2 A.SAVCHENKO,D.A.SANDERS,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 5 29-JUL-20 2F2E 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 24-FEB-09 2F2E 1 VERSN REVDAT 3 18-NOV-08 2F2E 1 JRNL REVDAT 2 28-NOV-06 2F2E 1 REMARK MASTER REVDAT 1 14-MAR-06 2F2E 0 JRNL AUTH E.A.SIEMINSKA,X.XU,A.SAVCHENKO,D.A.SANDERS JRNL TITL THE X-RAY CRYSTAL STRUCTURE OF PA1607 FROM PSEUDOMONAS JRNL TITL 2 AUREGINOSA AT 1.9 A RESOLUTION--A PUTATIVE TRANSCRIPTION JRNL TITL 3 FACTOR. JRNL REF PROTEIN SCI. V. 16 543 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17322537 JRNL DOI 10.1110/PS.062668207 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 21007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 890 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12000 REMARK 3 B22 (A**2) : -1.83000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.596 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2262 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3070 ; 1.696 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;31.623 ;22.264 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;14.916 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.385 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1739 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1150 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1546 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.347 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 1.254 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2243 ; 1.744 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 909 ; 2.965 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 824 ; 4.013 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-05 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932, 0.97948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 78.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN, 0.1 M TRIS, 0.2 M REMARK 280 LISO4, 28 % PEG 3350, PH 8.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 23.44200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.43250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 23.44200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.43250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN IS A DIMER IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 44.62475 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.90866 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -206.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 46.88400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 524 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 531 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 MSE B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 THR B 5 REMARK 465 ASP B 146 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 5 CB OG1 CG2 REMARK 480 LYS A 8 CB CG CD CE NZ REMARK 480 GLU A 63 OE1 OE2 REMARK 480 GLU A 73 CB CG CD OE1 OE2 REMARK 480 SER A 74 CB OG REMARK 480 ARG A 113 CD NE CZ NH1 NH2 REMARK 480 LYS B 51 NZ REMARK 480 ILE B 53 CD1 REMARK 480 ARG B 145 CG CD NE CZ NH1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 663 O HOH B 665 1.85 REMARK 500 O HOH A 531 O HOH B 650 1.98 REMARK 500 OD1 ASN A 60 O HOH A 660 2.17 REMARK 500 O HOH B 568 O HOH B 588 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 663 O HOH B 664 2655 1.54 REMARK 500 O HOH B 661 O HOH B 662 2655 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 8 CA LYS A 8 CB -0.137 REMARK 500 GLU A 63 CD GLU A 63 OE1 -0.478 REMARK 500 GLU A 63 CD GLU A 63 OE2 0.280 REMARK 500 SER A 74 CA SER A 74 CB -0.171 REMARK 500 LYS B 51 CE LYS B 51 NZ -0.339 REMARK 500 MSE B 67 SE MSE B 67 CE -0.370 REMARK 500 ARG B 145 CZ ARG B 145 NH2 -0.559 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 5 CB - CA - C ANGL. DEV. = 29.8 DEGREES REMARK 500 THR A 5 CA - CB - OG1 ANGL. DEV. = 19.3 DEGREES REMARK 500 GLU A 63 OE1 - CD - OE2 ANGL. DEV. = 21.9 DEGREES REMARK 500 GLU A 63 CG - CD - OE2 ANGL. DEV. = -31.7 DEGREES REMARK 500 LYS B 51 CD - CE - NZ ANGL. DEV. = 19.0 DEGREES REMARK 500 ARG B 145 CA - CB - CG ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG B 145 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 25 -31.51 -140.34 REMARK 500 SER A 76 63.80 -111.20 REMARK 500 GLN A 121 106.61 75.50 REMARK 500 ARG A 145 24.26 -76.10 REMARK 500 TRP B 25 -33.10 -131.23 REMARK 500 SER B 119 -56.97 158.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 119 GLY A 120 -126.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5613 RELATED DB: TARGETDB DBREF 2F2E A 1 146 UNP Q9I3B4 Q9I3B4_PSEAE 1 146 DBREF 2F2E B 1 146 UNP Q9I3B4 Q9I3B4_PSEAE 1 146 SEQADV 2F2E MSE A 1 UNP Q9I3B4 MET 1 MODIFIED RESIDUE SEQADV 2F2E MSE A 27 UNP Q9I3B4 MET 27 MODIFIED RESIDUE SEQADV 2F2E MSE A 67 UNP Q9I3B4 MET 67 MODIFIED RESIDUE SEQADV 2F2E MSE B 1 UNP Q9I3B4 MET 1 MODIFIED RESIDUE SEQADV 2F2E MSE B 27 UNP Q9I3B4 MET 27 MODIFIED RESIDUE SEQADV 2F2E MSE B 67 UNP Q9I3B4 MET 67 MODIFIED RESIDUE SEQRES 1 A 146 MSE VAL LYS ARG THR SER HIS LYS GLN ALA SER CYS PRO SEQRES 2 A 146 VAL ALA ARG PRO LEU ASP VAL ILE GLY ASP GLY TRP SER SEQRES 3 A 146 MSE LEU ILE VAL ARG ASP ALA PHE GLU GLY LEU THR ARG SEQRES 4 A 146 PHE GLY GLU PHE GLN LYS SER LEU GLY LEU ALA LYS ASN SEQRES 5 A 146 ILE LEU ALA ALA ARG LEU ARG ASN LEU VAL GLU HIS GLY SEQRES 6 A 146 VAL MSE VAL ALA VAL PRO ALA GLU SER GLY SER HIS GLN SEQRES 7 A 146 GLU TYR ARG LEU THR ASP LYS GLY ARG ALA LEU PHE PRO SEQRES 8 A 146 LEU LEU VAL ALA ILE ARG GLN TRP GLY GLU ASP TYR PHE SEQRES 9 A 146 PHE ALA PRO ASP GLU SER HIS VAL ARG LEU VAL GLU ARG SEQRES 10 A 146 ASP SER GLY GLN PRO VAL PRO ARG LEU GLN VAL ARG ALA SEQRES 11 A 146 GLY ASP GLY SER PRO LEU ALA ALA GLU ASP THR ARG VAL SEQRES 12 A 146 SER ARG ASP SEQRES 1 B 146 MSE VAL LYS ARG THR SER HIS LYS GLN ALA SER CYS PRO SEQRES 2 B 146 VAL ALA ARG PRO LEU ASP VAL ILE GLY ASP GLY TRP SER SEQRES 3 B 146 MSE LEU ILE VAL ARG ASP ALA PHE GLU GLY LEU THR ARG SEQRES 4 B 146 PHE GLY GLU PHE GLN LYS SER LEU GLY LEU ALA LYS ASN SEQRES 5 B 146 ILE LEU ALA ALA ARG LEU ARG ASN LEU VAL GLU HIS GLY SEQRES 6 B 146 VAL MSE VAL ALA VAL PRO ALA GLU SER GLY SER HIS GLN SEQRES 7 B 146 GLU TYR ARG LEU THR ASP LYS GLY ARG ALA LEU PHE PRO SEQRES 8 B 146 LEU LEU VAL ALA ILE ARG GLN TRP GLY GLU ASP TYR PHE SEQRES 9 B 146 PHE ALA PRO ASP GLU SER HIS VAL ARG LEU VAL GLU ARG SEQRES 10 B 146 ASP SER GLY GLN PRO VAL PRO ARG LEU GLN VAL ARG ALA SEQRES 11 B 146 GLY ASP GLY SER PRO LEU ALA ALA GLU ASP THR ARG VAL SEQRES 12 B 146 SER ARG ASP MODRES 2F2E MSE A 27 MET SELENOMETHIONINE MODRES 2F2E MSE A 67 MET SELENOMETHIONINE MODRES 2F2E MSE B 27 MET SELENOMETHIONINE MODRES 2F2E MSE B 67 MET SELENOMETHIONINE HET MSE A 27 8 HET MSE A 67 8 HET MSE B 27 8 HET MSE B 67 8 HET SO4 A 501 5 HET SO4 A 502 5 HET GLC B 401 12 HET SO4 B 503 5 HET SO4 B 504 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GLC ALPHA-D-GLUCOPYRANOSE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GLC C6 H12 O6 FORMUL 8 HOH *329(H2 O) HELIX 1 1 PRO A 17 GLY A 22 1 6 HELIX 2 2 TRP A 25 GLU A 35 1 11 HELIX 3 3 ARG A 39 GLY A 48 1 10 HELIX 4 4 ALA A 50 HIS A 64 1 15 HELIX 5 5 THR A 83 ALA A 88 1 6 HELIX 6 6 LEU A 89 PHE A 104 1 16 HELIX 7 7 ALA A 137 GLU A 139 5 3 HELIX 8 8 VAL B 14 GLY B 22 1 9 HELIX 9 9 TRP B 25 GLY B 36 1 12 HELIX 10 10 ARG B 39 GLY B 48 1 10 HELIX 11 11 ALA B 50 HIS B 64 1 15 HELIX 12 12 THR B 83 ALA B 88 1 6 HELIX 13 13 LEU B 89 PHE B 104 1 16 HELIX 14 14 ALA B 137 GLU B 139 5 3 SHEET 1 A 2 MSE A 67 PRO A 71 0 SHEET 2 A 2 GLN A 78 LEU A 82 -1 O GLU A 79 N VAL A 70 SHEET 1 B 2 ARG A 113 GLU A 116 0 SHEET 2 B 2 THR B 141 SER B 144 -1 O SER B 144 N ARG A 113 SHEET 1 C 2 THR A 141 SER A 144 0 SHEET 2 C 2 ARG B 113 GLU B 116 -1 O ARG B 113 N SER A 144 SHEET 1 D 2 MSE B 67 PRO B 71 0 SHEET 2 D 2 GLN B 78 LEU B 82 -1 O GLU B 79 N VAL B 70 LINK C SER A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N LEU A 28 1555 1555 1.34 LINK C VAL A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N VAL A 68 1555 1555 1.34 LINK C SER B 26 N MSE B 27 1555 1555 1.33 LINK C MSE B 27 N LEU B 28 1555 1555 1.33 LINK C VAL B 66 N MSE B 67 1555 1555 1.33 LINK C MSE B 67 N VAL B 68 1555 1555 1.34 CISPEP 1 GLY A 120 GLN A 121 0 3.26 CRYST1 46.884 78.865 78.941 90.00 91.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021329 0.000000 0.000609 0.00000 SCALE2 0.000000 0.012680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012673 0.00000