HEADER MEMBRANE PROTEIN, IMMUNE SYSTEM, TOXIN 17-NOV-05 2F2L TITLE CRYSTAL STRUCTURE OF TRACHEAL CYTOTOXIN (TCT) BOUND TO THE ECTODOMAIN TITLE 2 COMPLEX OF PEPTIDOGLYCAN RECOGNITION PROTEINS LCA (PGRP-LCA) AND LCX TITLE 3 (PGRP-LCX) CAVEAT 2F2L HSQ A 999 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN-RECOGNITION PROTEIN-LC ISOFORM LCA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (RESIDUES 355-520); COMPND 5 SYNONYM: IMMUNE RESPONSE DEFICIENT 7 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDOGLYCAN RECOGNITION PROTEIN-LC ISOFORM LCX; COMPND 9 CHAIN: X; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN (RESIDUES 335-500); COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HI-5 INSECT CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BAC-TO-BAC (INVITROGEN); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PFASTBAC HT A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 13 ORGANISM_COMMON: FRUIT FLY; SOURCE 14 ORGANISM_TAXID: 7227; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HI-5 INSECT CELLS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BAC-TO-BAC (INVITROGEN); SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PFASTBAC HT A KEYWDS PROTEIN-PEPTIDOGLYCAN COMPLEX, MEMBRANE PROTEIN, IMMUNE SYSTEM, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR C.I.CHANG,J.DEISENHOFER REVDAT 7 15-NOV-23 2F2L 1 REMARK REVDAT 6 23-AUG-23 2F2L 1 HETSYN REVDAT 5 29-JUL-20 2F2L 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HETNAM LINK SITE REVDAT 4 05-OCT-11 2F2L 1 LINK REVDAT 3 13-JUL-11 2F2L 1 VERSN REVDAT 2 24-FEB-09 2F2L 1 VERSN REVDAT 1 04-APR-06 2F2L 0 JRNL AUTH C.I.CHANG,Y.CHELLIAH,D.BOREK,D.MENGIN-LECREULX,J.DEISENHOFER JRNL TITL STRUCTURE OF TRACHEAL CYTOTOXIN IN COMPLEX WITH A JRNL TITL 2 HETERODIMERIC PATTERN-RECOGNITION RECEPTOR. JRNL REF SCIENCE V. 311 1761 2006 JRNL REFN ISSN 0036-8075 JRNL PMID 16556841 JRNL DOI 10.1126/SCIENCE.1123056 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1431 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : -2.05000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.604 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2867 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2537 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3893 ; 1.329 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5827 ; 0.798 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 5.917 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;38.928 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;13.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.863 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3139 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 592 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 499 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2504 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1382 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1614 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2155 ; 0.524 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 695 ; 0.111 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2692 ; 0.674 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1424 ; 1.417 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1201 ; 2.226 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1S2J AND 1Z6I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 1500, 5% REMARK 280 ETHYLENE GLYCOL, AND 100 MM PHOSPHATE-CITRATE, PH 4.2, REMARK 280 EVAPORATION, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.56150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.19450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.84750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.19450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.56150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.84750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE X 500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG A 998 O HOH A 185 2.11 REMARK 500 NZ LYS A 413 OD1 ASN A 442 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 474 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG X 474 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 488 35.79 -98.46 REMARK 500 ALA A 506 64.55 -167.53 REMARK 500 ALA X 368 -163.36 -127.88 REMARK 500 REMARK 500 REMARK: NULL DBREF 2F2L A 355 520 UNP Q9GNK5 PGPLC_DROME 355 520 DBREF 2F2L X 335 500 GB 20271150 AAM18530 335 500 SEQADV 2F2L ASP A 354 UNP Q9GNK5 CLONING ARTIFACT SEQADV 2F2L CSO A 414 UNP Q9GNK5 CYS 414 MODIFIED RESIDUE SEQADV 2F2L MET X 334 GB 20271150 CLONING ARTIFACT SEQRES 1 A 167 ASP PHE VAL GLU ARG GLN GLN TRP LEU ALA GLN PRO PRO SEQRES 2 A 167 GLN LYS GLU ILE PRO ASP LEU GLU LEU PRO VAL GLY LEU SEQRES 3 A 167 VAL ILE ALA LEU PRO THR ASN SER GLU ASN CYS SER THR SEQRES 4 A 167 GLN ALA ILE CYS VAL LEU ARG VAL ARG LEU LEU GLN THR SEQRES 5 A 167 TYR ASP ILE GLU SER SER GLN LYS CSO ASP ILE ALA TYR SEQRES 6 A 167 ASN PHE LEU ILE GLY GLY ASP GLY ASN VAL TYR VAL GLY SEQRES 7 A 167 ARG GLY TRP ASN LYS MET GLY ALA HIS MET ASN ASN ILE SEQRES 8 A 167 ASN TYR ASP SER GLN SER LEU SER PHE ALA TYR ILE GLY SEQRES 9 A 167 SER PHE LYS THR ILE GLN PRO SER ALA LYS GLN LEU SER SEQRES 10 A 167 VAL THR ARG LEU LEU LEU GLU ARG GLY VAL LYS LEU GLY SEQRES 11 A 167 LYS ILE ALA PRO SER TYR ARG PHE THR ALA SER SER LYS SEQRES 12 A 167 LEU MET PRO SER VAL THR ASP PHE LYS ALA ASP ALA LEU SEQRES 13 A 167 TYR ALA SER PHE ALA ASN TRP THR HIS TRP SER SEQRES 1 X 167 MET VAL ILE LEU LYS VAL ALA GLU TRP GLY GLY ARG PRO SEQRES 2 X 167 ALA LYS ARG MET LEU ASP ALA GLN GLN LEU PRO ILE ASN SEQRES 3 X 167 ARG VAL VAL ILE SER HIS THR ALA ALA GLU GLY CYS GLU SEQRES 4 X 167 SER ARG GLU VAL CYS SER ALA ARG VAL ASN VAL VAL GLN SEQRES 5 X 167 SER PHE HIS MET ASP SER TRP GLY TRP ASP HIS ILE GLY SEQRES 6 X 167 TYR ASN PHE LEU VAL GLY GLY ASP GLY ARG VAL TYR GLU SEQRES 7 X 167 GLY ARG GLY TRP ASP TYR VAL GLY ALA HIS THR LYS GLY SEQRES 8 X 167 TYR ASN ARG GLY SER ILE GLY ILE SER PHE ILE GLY THR SEQRES 9 X 167 PHE THR THR ARG LYS PRO ASN GLU ARG GLN LEU GLU ALA SEQRES 10 X 167 CYS GLN LEU LEU LEU GLN GLU GLY VAL ARG LEU LYS LYS SEQRES 11 X 167 LEU THR THR ASN TYR ARG LEU TYR GLY HIS ARG GLN LEU SEQRES 12 X 167 SER ALA THR GLU SER PRO GLY GLU GLU LEU TYR LYS ILE SEQRES 13 X 167 ILE LYS LYS TRP PRO HIS TRP SER HIS GLU ILE MODRES 2F2L ASN A 389 ASN GLYCOSYLATION SITE MODRES 2F2L ASN A 515 ASN GLYCOSYLATION SITE MODRES 2F2L CSO A 414 CYS S-HYDROXYCYSTEINE HET CSO A 414 7 HET NAG A 998 14 HET HSQ A 999 14 HET SO4 A1000 5 HET SO4 X 501 5 HET MLD X 201 64 HET CIT X 301 13 HETNAM CSO S-HYDROXYCYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM HSQ 2-ACETYLAMINO-2-DEOXY-ALPHA-L-IDOPYRANOSE HETNAM SO4 SULFATE ION HETNAM MLD GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU- HETNAM 2 MLD MESO-A2PM-D-ALA HETNAM CIT CITRIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN HSQ N-ACETYL-ALPHA-L-IDOSAMINE; 2-ACETYLAMINO-2-DEOXY- HETSYN 2 HSQ ALPHA-L-IDOSE; 2-ACETYLAMINO-2-DEOXY-L-IDOSE; 2- HETSYN 3 HSQ ACETYLAMINO-2-DEOXY-IDOSE; 2-(ACETYLAMINO)-2-DEOXY- HETSYN 4 HSQ ALPHA-L-IDOPYRANOSE HETSYN MLD 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE(BETA1-4)-2- HETSYN 2 MLD ACETAMIDO-1,6-ANHYDRO-3-O-[(R)-1-CARBOXYETHYL]-2- HETSYN 3 MLD DEOXY-BETA-D-GLUCOPYRANOSE-L-ALANYL-GAMMA-D-GLUTAMYL- HETSYN 4 MLD MESO-DIAMINOPIMELYL-D-ALANINE FORMUL 1 CSO C3 H7 N O3 S FORMUL 3 NAG C8 H15 N O6 FORMUL 4 HSQ C8 H15 N O6 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 MLD C37 H59 N7 O20 FORMUL 8 CIT C6 H8 O7 FORMUL 9 HOH *195(H2 O) HELIX 1 1 GLU A 357 LEU A 362 5 6 HELIX 2 2 THR A 392 SER A 410 1 19 HELIX 3 3 ASN A 443 SER A 448 1 6 HELIX 4 4 SER A 465 LEU A 482 1 18 HELIX 5 5 SER A 494 MET A 498 1 5 HELIX 6 6 VAL A 501 LYS A 505 5 5 HELIX 7 7 ALA A 506 SER A 512 1 7 HELIX 8 8 LYS X 338 GLY X 343 5 6 HELIX 9 9 SER X 373 ASP X 390 1 18 HELIX 10 10 ASN X 444 LEU X 461 1 18 HELIX 11 11 ARG X 474 LEU X 476 5 3 HELIX 12 12 GLY X 483 LYS X 491 1 9 SHEET 1 A 6 PHE A 355 VAL A 356 0 SHEET 2 A 6 VAL A 428 VAL A 430 1 O VAL A 428 N VAL A 356 SHEET 3 A 6 PHE A 420 ILE A 422 -1 N LEU A 421 O TYR A 429 SHEET 4 A 6 LEU A 451 TYR A 455 1 O ALA A 454 N ILE A 422 SHEET 5 A 6 VAL A 377 PRO A 384 1 N LEU A 383 O TYR A 455 SHEET 6 A 6 ILE A 485 ALA A 493 1 O ALA A 486 N VAL A 377 SHEET 1 B 6 ILE X 336 LEU X 337 0 SHEET 2 B 6 VAL X 409 GLU X 411 1 O VAL X 409 N LEU X 337 SHEET 3 B 6 PHE X 401 VAL X 403 -1 N LEU X 402 O TYR X 410 SHEET 4 B 6 ILE X 430 PHE X 434 1 O SER X 433 N VAL X 403 SHEET 5 B 6 ILE X 358 HIS X 365 1 N VAL X 362 O ILE X 430 SHEET 6 B 6 LEU X 464 GLY X 472 1 O TYR X 471 N ILE X 363 SSBOND 1 CYS A 390 CYS A 396 1555 1555 2.08 SSBOND 2 CYS X 371 CYS X 377 1555 1555 2.08 LINK ND2 ASN A 389 C1 NAG A 998 1555 1555 1.44 LINK C LYS A 413 N CSO A 414 1555 1555 1.34 LINK C CSO A 414 N ASP A 415 1555 1555 1.33 LINK ND2 ASN A 515 C1 HSQ A 999 1555 1555 1.45 CISPEP 1 LEU A 375 PRO A 376 0 -3.29 CISPEP 2 LEU X 356 PRO X 357 0 -2.67 CISPEP 3 SER X 481 PRO X 482 0 3.85 CRYST1 41.123 79.695 114.389 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008742 0.00000