HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-NOV-05 2F40 TITLE STRUCTURE OF A NOVEL PROTEIN FROM BACKBONE-CENTERED NMR DATA AND NMR- TITLE 2 ASSISTED STRUCTURE PREDICTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PF1455; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10, BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRIL KEYWDS PROTEIN STRUCTURE PREDICTION, RESIDUAL DIPOLAR COUPLINGS, PYROCOCCUS KEYWDS 2 FURIOUS, SIMULATED ANNEALING, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 4 GENOMICS, SECSG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.BANSAL,J.H.PRESTEGARD,SOUTHEAST COLLABORATORY FOR STRUCTURAL AUTHOR 2 GENOMICS (SECSG) REVDAT 5 01-MAY-24 2F40 1 SEQADV REVDAT 4 13-JUL-11 2F40 1 VERSN REVDAT 3 24-FEB-09 2F40 1 VERSN REVDAT 2 07-NOV-06 2F40 1 JRNL REVDAT 1 20-DEC-05 2F40 0 JRNL AUTH K.L.MAYER,Y.QU,S.BANSAL,P.D.LEBLOND,F.E.JENNEY,P.S.BRERETON, JRNL AUTH 2 M.W.ADAMS,Y.XU,J.H.PRESTEGARD JRNL TITL STRUCTURE DETERMINATION OF A NEW PROTEIN FROM JRNL TITL 2 BACKBONE-CENTERED NMR DATA AND NMR-ASSISTED STRUCTURE JRNL TITL 3 PREDICTION. JRNL REF PROTEINS V. 65 480 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16927360 JRNL DOI 10.1002/PROT.21119 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, XPLOR-NIH 2.9.1 REMARK 3 AUTHORS : F. DELAGLIO, S. GRZESIEK, G. W. VUISTER, G. ZHU, REMARK 3 J. PFEIFER AND A. BAX (NMRPIPE), C.D.SCHWIETERS, REMARK 3 J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LIMITED AMOUNTS OF STRUCTURAL DATA ARE REMARK 3 USED TO IMPROVE AN INITIAL HOMOLOGY SEARCH AND THE DATA ARE REMARK 3 SUBSEQUENTLY USED TO PRODUCE A STRUCTURE BY DATA-CONSTRAINED REMARK 3 REFINEMENT OF AN IDENTIFIED STRUCTURAL TEMPLATE REMARK 4 REMARK 4 2F40 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035424. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 70MM NACL; 40MM NACL; 70MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM PF1455 U-15N, 20MM TRIS, REMARK 210 70MM NACL, PH 7.0, 90% H20, 10% REMARK 210 D20; 1.14MM PF1455 U-15N/16%13C, REMARK 210 11MM TRIS, 40MM NACL, 10MG/ML REMARK 210 PHAGE, PHAGE IN 90% H2O, 10% D2O; REMARK 210 1.2MM PF1455 U-15N/16%13C, 20MM REMARK 210 TRIS, 70MM NACL, 3% C12E5/ REMARK 210 HEXANOL, PH 7.0, C12E5 IN 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N IPAP HSQC; 3D_15N REMARK 210 -SEPARATED_NOESY; HNCA-ECOSY; REMARK 210 HNCAHA; 3D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : REDCAT 1.0 REMARK 210 METHOD USED : RDC DIRECTED FRAGMENT ASSEMBLY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 GLU A 75 REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 LEU A 78 REMARK 465 SER A 79 REMARK 465 TRP A 80 REMARK 465 ASN A 81 REMARK 465 ASN A 82 REMARK 465 VAL A 83 REMARK 465 LEU A 84 REMARK 465 ARG A 85 REMARK 465 SER A 86 REMARK 465 LYS A 87 REMARK 465 ALA A 88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 GLY A 60 N GLY A 60 CA 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 LEU A 70 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 1 LEU A 70 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 2 LEU A 70 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 2 LEU A 70 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 3 LEU A 70 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 3 LEU A 70 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 9 GLU A 61 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 5 -156.19 -94.57 REMARK 500 1 PHE A 6 -158.71 176.27 REMARK 500 1 ASN A 9 -77.20 -163.60 REMARK 500 1 GLU A 13 -49.27 -148.84 REMARK 500 1 GLU A 14 0.37 -62.07 REMARK 500 1 ARG A 25 -79.36 -29.91 REMARK 500 1 ASP A 26 22.29 -70.88 REMARK 500 1 GLU A 27 -40.70 -150.68 REMARK 500 1 TYR A 29 -111.51 -128.97 REMARK 500 1 TYR A 36 -30.76 -160.90 REMARK 500 1 ALA A 40 67.47 62.78 REMARK 500 1 ASP A 46 123.07 -170.76 REMARK 500 1 LYS A 48 -70.71 -101.86 REMARK 500 1 VAL A 49 -44.33 177.53 REMARK 500 1 ASN A 50 -4.64 99.23 REMARK 500 1 GLU A 61 -7.18 58.69 REMARK 500 1 GLU A 65 -73.79 -111.76 REMARK 500 1 GLU A 67 72.06 -108.11 REMARK 500 1 ILE A 68 77.90 -103.95 REMARK 500 1 THR A 69 44.31 -87.34 REMARK 500 1 GLN A 71 -114.10 26.70 REMARK 500 1 LEU A 73 -95.49 -37.76 REMARK 500 2 LYS A 5 -156.19 -94.57 REMARK 500 2 PHE A 6 -158.71 176.27 REMARK 500 2 ASN A 9 -77.20 -163.60 REMARK 500 2 GLU A 13 -49.27 -148.84 REMARK 500 2 GLU A 14 0.37 -62.07 REMARK 500 2 ARG A 25 -79.36 -29.91 REMARK 500 2 ASP A 26 22.29 -70.88 REMARK 500 2 GLU A 27 -40.70 -150.68 REMARK 500 2 TYR A 29 -111.51 -128.97 REMARK 500 2 TYR A 36 -30.76 -160.90 REMARK 500 2 ALA A 40 67.47 62.78 REMARK 500 2 ASP A 46 123.07 -170.76 REMARK 500 2 LYS A 48 -70.71 -101.86 REMARK 500 2 VAL A 49 -44.33 177.53 REMARK 500 2 ASN A 50 -4.64 99.23 REMARK 500 2 GLU A 61 -7.18 58.69 REMARK 500 2 GLU A 65 -73.79 -111.76 REMARK 500 2 GLU A 67 72.06 -108.11 REMARK 500 2 ILE A 68 77.90 -103.95 REMARK 500 2 THR A 69 44.31 -87.34 REMARK 500 2 GLN A 71 -114.10 26.70 REMARK 500 2 LEU A 73 -95.49 -37.76 REMARK 500 3 LYS A 5 -156.19 -94.57 REMARK 500 3 PHE A 6 -158.71 176.27 REMARK 500 3 ASN A 9 -77.20 -163.60 REMARK 500 3 GLU A 13 -49.27 -148.84 REMARK 500 3 GLU A 14 0.37 -62.07 REMARK 500 3 ARG A 25 -79.36 -29.91 REMARK 500 REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 71 GLU A 72 10 147.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1362288-001 RELATED DB: TARGETDB DBREF 2F40 A 2 88 GB 18977827 NP_579184 2 88 SEQADV 2F40 ALA A -7 GB 18977827 EXPRESSION TAG SEQADV 2F40 HIS A -6 GB 18977827 EXPRESSION TAG SEQADV 2F40 HIS A -5 GB 18977827 EXPRESSION TAG SEQADV 2F40 HIS A -4 GB 18977827 EXPRESSION TAG SEQADV 2F40 HIS A -3 GB 18977827 EXPRESSION TAG SEQADV 2F40 HIS A -2 GB 18977827 EXPRESSION TAG SEQADV 2F40 HIS A -1 GB 18977827 EXPRESSION TAG SEQADV 2F40 GLY A 0 GB 18977827 EXPRESSION TAG SEQADV 2F40 SER A 1 GB 18977827 EXPRESSION TAG SEQRES 1 A 96 ALA HIS HIS HIS HIS HIS HIS GLY SER LYS TRP ILE LYS SEQRES 2 A 96 PHE THR THR ASN LEU THR PRO GLU GLU ALA LYS ILE VAL SEQRES 3 A 96 GLN TYR GLU LEU SER THR ARG ASP GLU PHE TYR ARG VAL SEQRES 4 A 96 PHE ILE ASN PRO TYR ALA LYS VAL ALA GLU VAL VAL ILE SEQRES 5 A 96 ASP ASP SER LYS VAL ASN ILE GLU GLU LEU LYS GLU LYS SEQRES 6 A 96 LEU LYS GLY GLU VAL ILE GLU GLU LYS GLU ILE THR LEU SEQRES 7 A 96 GLN GLU LEU ILE GLU GLY SER LEU SER TRP ASN ASN VAL SEQRES 8 A 96 LEU ARG SER LYS ALA HELIX 1 1 ALA A 15 GLU A 21 1 7 HELIX 2 2 ASN A 50 LEU A 58 1 9 SHEET 1 A 2 TRP A 3 LYS A 5 0 SHEET 2 A 2 GLU A 41 VAL A 43 -1 O VAL A 42 N ILE A 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1