data_2F4D # _entry.id 2F4D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2F4D RCSB RCSB035437 WWPDB D_1000035437 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2007-04-10 _pdbx_database_PDB_obs_spr.pdb_id NONE _pdbx_database_PDB_obs_spr.replace_pdb_id 2F4D _pdbx_database_PDB_obs_spr.details 'Removed at PI request' # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1VHR . unspecified PDB 1J4X . unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2F4D _pdbx_database_status.recvd_initial_deposition_date 2005-11-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, Y.' 1 ? 'Shi, Z.' 2 ? 'Shi, Y.' 3 ? 'Zhou, C.Z.' 4 ? # _citation.id primary _citation.title ;Human Vaccina H1 related protein (VHR) and its specific inhibitors, from computer-aided and NMR-based screening to crystal structure validation ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, Y.' 1 primary 'Shi, Z.' 2 primary 'Shi, Y.' 3 primary 'Zhou, C.Z.' 4 # _cell.entry_id 2F4D _cell.length_a 37.686 _cell.length_b 59.406 _cell.length_c 43.037 _cell.angle_alpha 90.00 _cell.angle_beta 102.60 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2F4D _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dual specificity protein phosphatase 3' 20494.195 1 '3.1.3.48, 3.1.3.16' ? ? ? 2 non-polymer syn '(2-((2R,3S,4R,5S,6S)-3-AMINO-4,5-DIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YLAMINO)ETHOXY)STANNANETRIOL' 390.963 1 ? ? ? ? 3 non-polymer syn BETA-MERCAPTOETHANOL 78.133 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 5 water nat water 18.015 178 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VH-1 Related Protein, VHR, Dual specificity protein phosphatase VHR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SGSFELSVQDLNDLLSDGSG(CME)YSLPSQP(OCS)NEVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNT NANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSI VRQNREIGPNDGFLAQLCQLNDRLAKEGKLKP ; _entity_poly.pdbx_seq_one_letter_code_can ;SGSFELSVQDLNDLLSDGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDS GITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIG PNDGFLAQLCQLNDRLAKEGKLKP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 SER n 1 4 PHE n 1 5 GLU n 1 6 LEU n 1 7 SER n 1 8 VAL n 1 9 GLN n 1 10 ASP n 1 11 LEU n 1 12 ASN n 1 13 ASP n 1 14 LEU n 1 15 LEU n 1 16 SER n 1 17 ASP n 1 18 GLY n 1 19 SER n 1 20 GLY n 1 21 CME n 1 22 TYR n 1 23 SER n 1 24 LEU n 1 25 PRO n 1 26 SER n 1 27 GLN n 1 28 PRO n 1 29 OCS n 1 30 ASN n 1 31 GLU n 1 32 VAL n 1 33 THR n 1 34 PRO n 1 35 ARG n 1 36 ILE n 1 37 TYR n 1 38 VAL n 1 39 GLY n 1 40 ASN n 1 41 ALA n 1 42 SER n 1 43 VAL n 1 44 ALA n 1 45 GLN n 1 46 ASP n 1 47 ILE n 1 48 PRO n 1 49 LYS n 1 50 LEU n 1 51 GLN n 1 52 LYS n 1 53 LEU n 1 54 GLY n 1 55 ILE n 1 56 THR n 1 57 HIS n 1 58 VAL n 1 59 LEU n 1 60 ASN n 1 61 ALA n 1 62 ALA n 1 63 GLU n 1 64 GLY n 1 65 ARG n 1 66 SER n 1 67 PHE n 1 68 MET n 1 69 HIS n 1 70 VAL n 1 71 ASN n 1 72 THR n 1 73 ASN n 1 74 ALA n 1 75 ASN n 1 76 PHE n 1 77 TYR n 1 78 LYS n 1 79 ASP n 1 80 SER n 1 81 GLY n 1 82 ILE n 1 83 THR n 1 84 TYR n 1 85 LEU n 1 86 GLY n 1 87 ILE n 1 88 LYS n 1 89 ALA n 1 90 ASN n 1 91 ASP n 1 92 THR n 1 93 GLN n 1 94 GLU n 1 95 PHE n 1 96 ASN n 1 97 LEU n 1 98 SER n 1 99 ALA n 1 100 TYR n 1 101 PHE n 1 102 GLU n 1 103 ARG n 1 104 ALA n 1 105 ALA n 1 106 ASP n 1 107 PHE n 1 108 ILE n 1 109 ASP n 1 110 GLN n 1 111 ALA n 1 112 LEU n 1 113 ALA n 1 114 GLN n 1 115 LYS n 1 116 ASN n 1 117 GLY n 1 118 ARG n 1 119 VAL n 1 120 LEU n 1 121 VAL n 1 122 HIS n 1 123 CYS n 1 124 ARG n 1 125 GLU n 1 126 GLY n 1 127 TYR n 1 128 SER n 1 129 ARG n 1 130 SER n 1 131 PRO n 1 132 THR n 1 133 LEU n 1 134 VAL n 1 135 ILE n 1 136 ALA n 1 137 TYR n 1 138 LEU n 1 139 MET n 1 140 MET n 1 141 ARG n 1 142 GLN n 1 143 LYS n 1 144 MET n 1 145 ASP n 1 146 VAL n 1 147 LYS n 1 148 SER n 1 149 ALA n 1 150 LEU n 1 151 SER n 1 152 ILE n 1 153 VAL n 1 154 ARG n 1 155 GLN n 1 156 ASN n 1 157 ARG n 1 158 GLU n 1 159 ILE n 1 160 GLY n 1 161 PRO n 1 162 ASN n 1 163 ASP n 1 164 GLY n 1 165 PHE n 1 166 LEU n 1 167 ALA n 1 168 GLN n 1 169 LEU n 1 170 CYS n 1 171 GLN n 1 172 LEU n 1 173 ASN n 1 174 ASP n 1 175 ARG n 1 176 LEU n 1 177 ALA n 1 178 LYS n 1 179 GLU n 1 180 GLY n 1 181 LYS n 1 182 LEU n 1 183 LYS n 1 184 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DUS3_HUMAN _struct_ref.pdbx_db_accession P51452 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SGSFELSVQDLNDLLSDGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDS GITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIG PNDGFLAQLCQLNDRLAKEGKLKP ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2F4D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P51452 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 185 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 185 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CME 'L-peptide linking' n 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' ? 'C5 H11 N O3 S2' 197.276 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HGT non-polymer . '(2-((2R,3S,4R,5S,6S)-3-AMINO-4,5-DIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YLAMINO)ETHOXY)STANNANETRIOL' ? 'C8 H20 N2 O8 Sn' 390.963 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2F4D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '15% PEG 10000, 0.1M HEPES, 10% Ethylene Glycol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-05-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Mirror _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54179 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54179 # _reflns.entry_id 2F4D _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 6.0 _reflns.d_resolution_low 29.700 _reflns.d_resolution_high 1.670 _reflns.number_obs 20799 _reflns.number_all 21535 _reflns.percent_possible_obs 96.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.672 _reflns_shell.d_res_low 1.714 _reflns_shell.percent_possible_all 92.07 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1338 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2F4D _refine.ls_number_reflns_obs 19231 _refine.ls_number_reflns_all 21535 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.67 _refine.ls_percent_reflns_obs 96.61 _refine.ls_R_factor_obs 0.19994 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19654 _refine.ls_R_factor_R_free 0.24168 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.3 _refine.ls_number_reflns_R_free 1515 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 22.608 _refine.aniso_B[1][1] -0.63 _refine.aniso_B[2][2] 0.17 _refine.aniso_B[3][3] 0.73 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.62 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1VHR' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.122 _refine.pdbx_overall_ESU_R_Free 0.122 _refine.overall_SU_ML 0.078 _refine.overall_SU_B 2.287 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1408 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 178 _refine_hist.number_atoms_total 1625 _refine_hist.d_res_high 1.67 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.016 0.022 ? 1466 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.620 1.994 ? 1971 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.277 5.000 ? 179 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 36.720 24.783 ? 69 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.891 15.000 ? 254 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 15.778 15.000 ? 10 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.114 0.200 ? 220 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1086 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined 0.214 0.200 ? 754 ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 0.304 0.200 ? 994 ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 0.154 0.200 ? 162 ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 0.269 0.200 ? 44 ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 0.149 0.200 ? 23 ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.957 1.500 ? 895 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.673 2.000 ? 1437 ? 'X-RAY DIFFRACTION' r_scbond_it 2.968 3.000 ? 581 ? 'X-RAY DIFFRACTION' r_scangle_it 4.167 4.500 ? 534 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.672 _refine_ls_shell.d_res_low 1.715 _refine_ls_shell.number_reflns_R_work 1357 _refine_ls_shell.R_factor_R_work 0.342 _refine_ls_shell.percent_reflns_obs 92.18 _refine_ls_shell.R_factor_R_free 0.469 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 93 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2F4D _struct.title 'Crystal structure of the complex of VHR and its inhibitor GATH' _struct.pdbx_descriptor 'Dual specificity protein phosphatase 3 (E.C.3.1.3.48, 3.1.3.16)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F4D _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Protein-Organotin Complex, hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 5 ? SER A 16 ? GLU A 6 SER A 17 1 ? 12 HELX_P HELX_P2 2 ASN A 40 ? GLN A 45 ? ASN A 41 GLN A 46 1 ? 6 HELX_P HELX_P3 3 ASP A 46 ? LEU A 53 ? ASP A 47 LEU A 54 1 ? 8 HELX_P HELX_P4 4 ASN A 73 ? LYS A 78 ? ASN A 74 LYS A 79 5 ? 6 HELX_P HELX_P5 5 ASN A 96 ? ALA A 99 ? ASN A 97 ALA A 100 5 ? 4 HELX_P HELX_P6 6 TYR A 100 ? GLN A 114 ? TYR A 101 GLN A 115 1 ? 15 HELX_P HELX_P7 7 SER A 128 ? GLN A 142 ? SER A 129 GLN A 143 1 ? 15 HELX_P HELX_P8 8 ASP A 145 ? ARG A 157 ? ASP A 146 ARG A 158 1 ? 13 HELX_P HELX_P9 9 ASN A 162 ? GLU A 179 ? ASN A 163 GLU A 180 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 20 C ? ? ? 1_555 A CME 21 N ? ? A GLY 21 A CME 22 1_555 ? ? ? ? ? ? ? 1.344 ? covale2 covale ? ? A CME 21 C ? ? ? 1_555 A TYR 22 N ? ? A CME 22 A TYR 23 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A PRO 28 C ? ? ? 1_555 A OCS 29 N ? ? A PRO 29 A OCS 30 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A OCS 29 C ? ? ? 1_555 A ASN 30 N ? ? A OCS 30 A ASN 31 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 OCS A 29 ? THR A 33 ? OCS A 30 THR A 34 A 2 ILE A 36 ? GLY A 39 ? ILE A 37 GLY A 40 A 3 VAL A 119 ? HIS A 122 ? VAL A 120 HIS A 123 A 4 HIS A 57 ? ASN A 60 ? HIS A 58 ASN A 61 A 5 THR A 83 ? GLY A 86 ? THR A 84 GLY A 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 33 ? N THR A 34 O ILE A 36 ? O ILE A 37 A 2 3 N TYR A 37 ? N TYR A 38 O VAL A 121 ? O VAL A 122 A 3 4 O LEU A 120 ? O LEU A 121 N LEU A 59 ? N LEU A 60 A 4 5 N VAL A 58 ? N VAL A 59 O THR A 83 ? O THR A 84 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE HGT A 201' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE BME A 202' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 203' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 204' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 205' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 MET A 68 ? MET A 69 . ? 1_555 ? 2 AC1 15 ASP A 91 ? ASP A 92 . ? 1_555 ? 3 AC1 15 GLN A 114 ? GLN A 115 . ? 1_455 ? 4 AC1 15 CYS A 123 ? CYS A 124 . ? 1_555 ? 5 AC1 15 ARG A 124 ? ARG A 125 . ? 1_555 ? 6 AC1 15 GLU A 125 ? GLU A 126 . ? 1_555 ? 7 AC1 15 GLY A 126 ? GLY A 127 . ? 1_555 ? 8 AC1 15 TYR A 127 ? TYR A 128 . ? 1_555 ? 9 AC1 15 SER A 128 ? SER A 129 . ? 1_555 ? 10 AC1 15 ARG A 129 ? ARG A 130 . ? 1_555 ? 11 AC1 15 HOH H . ? HOH A 303 . ? 1_555 ? 12 AC1 15 HOH H . ? HOH A 348 . ? 1_555 ? 13 AC1 15 HOH H . ? HOH A 352 . ? 1_555 ? 14 AC1 15 HOH H . ? HOH A 370 . ? 1_555 ? 15 AC1 15 HOH H . ? HOH A 404 . ? 1_555 ? 16 AC2 6 ASP A 91 ? ASP A 92 . ? 1_555 ? 17 AC2 6 GLN A 93 ? GLN A 94 . ? 1_555 ? 18 AC2 6 GLN A 114 ? GLN A 115 . ? 1_455 ? 19 AC2 6 ASN A 162 ? ASN A 163 . ? 1_555 ? 20 AC2 6 HOH H . ? HOH A 305 . ? 1_455 ? 21 AC2 6 HOH H . ? HOH A 340 . ? 1_555 ? 22 AC3 3 ALA A 99 ? ALA A 100 . ? 1_555 ? 23 AC3 3 TYR A 100 ? TYR A 101 . ? 1_555 ? 24 AC3 3 HOH H . ? HOH A 389 . ? 1_555 ? 25 AC4 3 SER A 23 ? SER A 24 . ? 1_555 ? 26 AC4 3 LEU A 24 ? LEU A 25 . ? 1_555 ? 27 AC4 3 HOH H . ? HOH A 339 . ? 1_555 ? 28 AC5 5 THR A 33 ? THR A 34 . ? 1_555 ? 29 AC5 5 PRO A 34 ? PRO A 35 . ? 1_555 ? 30 AC5 5 ILE A 36 ? ILE A 37 . ? 1_555 ? 31 AC5 5 LEU A 112 ? LEU A 113 . ? 1_555 ? 32 AC5 5 GLN A 142 ? GLN A 143 . ? 1_555 ? 33 AC6 4 GLU A 31 ? GLU A 32 . ? 1_555 ? 34 AC6 4 THR A 33 ? THR A 34 . ? 1_555 ? 35 AC6 4 PRO A 34 ? PRO A 35 . ? 1_555 ? 36 AC6 4 HOH H . ? HOH A 442 . ? 1_555 ? # _database_PDB_matrix.entry_id 2F4D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2F4D _atom_sites.fract_transf_matrix[1][1] 0.026535 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005931 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016833 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023809 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 ? ? ? A . n A 1 2 GLY 2 3 ? ? ? A . n A 1 3 SER 3 4 ? ? ? A . n A 1 4 PHE 4 5 ? ? ? A . n A 1 5 GLU 5 6 6 GLU GLU A . n A 1 6 LEU 6 7 7 LEU LEU A . n A 1 7 SER 7 8 8 SER SER A . n A 1 8 VAL 8 9 9 VAL VAL A . n A 1 9 GLN 9 10 10 GLN GLN A . n A 1 10 ASP 10 11 11 ASP ASP A . n A 1 11 LEU 11 12 12 LEU LEU A . n A 1 12 ASN 12 13 13 ASN ASN A . n A 1 13 ASP 13 14 14 ASP ASP A . n A 1 14 LEU 14 15 15 LEU LEU A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 SER 16 17 17 SER SER A . n A 1 17 ASP 17 18 18 ASP ASP A . n A 1 18 GLY 18 19 19 GLY GLY A . n A 1 19 SER 19 20 20 SER SER A . n A 1 20 GLY 20 21 21 GLY GLY A . n A 1 21 CME 21 22 22 CME CME A . n A 1 22 TYR 22 23 23 TYR TYR A . n A 1 23 SER 23 24 24 SER SER A . n A 1 24 LEU 24 25 25 LEU LEU A . n A 1 25 PRO 25 26 26 PRO PRO A . n A 1 26 SER 26 27 27 SER SER A . n A 1 27 GLN 27 28 28 GLN GLN A . n A 1 28 PRO 28 29 29 PRO PRO A . n A 1 29 OCS 29 30 30 OCS OCS A . n A 1 30 ASN 30 31 31 ASN ASN A . n A 1 31 GLU 31 32 32 GLU GLU A . n A 1 32 VAL 32 33 33 VAL VAL A . n A 1 33 THR 33 34 34 THR THR A . n A 1 34 PRO 34 35 35 PRO PRO A . n A 1 35 ARG 35 36 36 ARG ARG A . n A 1 36 ILE 36 37 37 ILE ILE A . n A 1 37 TYR 37 38 38 TYR TYR A . n A 1 38 VAL 38 39 39 VAL VAL A . n A 1 39 GLY 39 40 40 GLY GLY A . n A 1 40 ASN 40 41 41 ASN ASN A . n A 1 41 ALA 41 42 42 ALA ALA A . n A 1 42 SER 42 43 43 SER SER A . n A 1 43 VAL 43 44 44 VAL VAL A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 GLN 45 46 46 GLN GLN A . n A 1 46 ASP 46 47 47 ASP ASP A . n A 1 47 ILE 47 48 48 ILE ILE A . n A 1 48 PRO 48 49 49 PRO PRO A . n A 1 49 LYS 49 50 50 LYS LYS A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 GLN 51 52 52 GLN GLN A . n A 1 52 LYS 52 53 53 LYS LYS A . n A 1 53 LEU 53 54 54 LEU LEU A . n A 1 54 GLY 54 55 55 GLY GLY A . n A 1 55 ILE 55 56 56 ILE ILE A . n A 1 56 THR 56 57 57 THR THR A . n A 1 57 HIS 57 58 58 HIS HIS A . n A 1 58 VAL 58 59 59 VAL VAL A . n A 1 59 LEU 59 60 60 LEU LEU A . n A 1 60 ASN 60 61 61 ASN ASN A . n A 1 61 ALA 61 62 62 ALA ALA A . n A 1 62 ALA 62 63 63 ALA ALA A . n A 1 63 GLU 63 64 64 GLU GLU A . n A 1 64 GLY 64 65 65 GLY GLY A . n A 1 65 ARG 65 66 66 ARG ARG A . n A 1 66 SER 66 67 67 SER SER A . n A 1 67 PHE 67 68 68 PHE PHE A . n A 1 68 MET 68 69 69 MET MET A . n A 1 69 HIS 69 70 70 HIS HIS A . n A 1 70 VAL 70 71 71 VAL VAL A . n A 1 71 ASN 71 72 72 ASN ASN A . n A 1 72 THR 72 73 73 THR THR A . n A 1 73 ASN 73 74 74 ASN ASN A . n A 1 74 ALA 74 75 75 ALA ALA A . n A 1 75 ASN 75 76 76 ASN ASN A . n A 1 76 PHE 76 77 77 PHE PHE A . n A 1 77 TYR 77 78 78 TYR TYR A . n A 1 78 LYS 78 79 79 LYS LYS A . n A 1 79 ASP 79 80 80 ASP ASP A . n A 1 80 SER 80 81 81 SER SER A . n A 1 81 GLY 81 82 82 GLY GLY A . n A 1 82 ILE 82 83 83 ILE ILE A . n A 1 83 THR 83 84 84 THR THR A . n A 1 84 TYR 84 85 85 TYR TYR A . n A 1 85 LEU 85 86 86 LEU LEU A . n A 1 86 GLY 86 87 87 GLY GLY A . n A 1 87 ILE 87 88 88 ILE ILE A . n A 1 88 LYS 88 89 89 LYS LYS A . n A 1 89 ALA 89 90 90 ALA ALA A . n A 1 90 ASN 90 91 91 ASN ASN A . n A 1 91 ASP 91 92 92 ASP ASP A . n A 1 92 THR 92 93 93 THR THR A . n A 1 93 GLN 93 94 94 GLN GLN A . n A 1 94 GLU 94 95 95 GLU GLU A . n A 1 95 PHE 95 96 96 PHE PHE A . n A 1 96 ASN 96 97 97 ASN ASN A . n A 1 97 LEU 97 98 98 LEU LEU A . n A 1 98 SER 98 99 99 SER SER A . n A 1 99 ALA 99 100 100 ALA ALA A . n A 1 100 TYR 100 101 101 TYR TYR A . n A 1 101 PHE 101 102 102 PHE PHE A . n A 1 102 GLU 102 103 103 GLU GLU A . n A 1 103 ARG 103 104 104 ARG ARG A . n A 1 104 ALA 104 105 105 ALA ALA A . n A 1 105 ALA 105 106 106 ALA ALA A . n A 1 106 ASP 106 107 107 ASP ASP A . n A 1 107 PHE 107 108 108 PHE PHE A . n A 1 108 ILE 108 109 109 ILE ILE A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 GLN 110 111 111 GLN GLN A . n A 1 111 ALA 111 112 112 ALA ALA A . n A 1 112 LEU 112 113 113 LEU LEU A . n A 1 113 ALA 113 114 114 ALA ALA A . n A 1 114 GLN 114 115 115 GLN GLN A . n A 1 115 LYS 115 116 116 LYS LYS A . n A 1 116 ASN 116 117 117 ASN ASN A . n A 1 117 GLY 117 118 118 GLY GLY A . n A 1 118 ARG 118 119 119 ARG ARG A . n A 1 119 VAL 119 120 120 VAL VAL A . n A 1 120 LEU 120 121 121 LEU LEU A . n A 1 121 VAL 121 122 122 VAL VAL A . n A 1 122 HIS 122 123 123 HIS HIS A . n A 1 123 CYS 123 124 124 CYS CYS A . n A 1 124 ARG 124 125 125 ARG ARG A . n A 1 125 GLU 125 126 126 GLU GLU A . n A 1 126 GLY 126 127 127 GLY GLY A . n A 1 127 TYR 127 128 128 TYR TYR A . n A 1 128 SER 128 129 129 SER SER A . n A 1 129 ARG 129 130 130 ARG ARG A . n A 1 130 SER 130 131 131 SER SER A . n A 1 131 PRO 131 132 132 PRO PRO A . n A 1 132 THR 132 133 133 THR THR A . n A 1 133 LEU 133 134 134 LEU LEU A . n A 1 134 VAL 134 135 135 VAL VAL A . n A 1 135 ILE 135 136 136 ILE ILE A . n A 1 136 ALA 136 137 137 ALA ALA A . n A 1 137 TYR 137 138 138 TYR TYR A . n A 1 138 LEU 138 139 139 LEU LEU A . n A 1 139 MET 139 140 140 MET MET A . n A 1 140 MET 140 141 141 MET MET A . n A 1 141 ARG 141 142 142 ARG ARG A . n A 1 142 GLN 142 143 143 GLN GLN A . n A 1 143 LYS 143 144 144 LYS LYS A . n A 1 144 MET 144 145 145 MET MET A . n A 1 145 ASP 145 146 146 ASP ASP A . n A 1 146 VAL 146 147 147 VAL VAL A . n A 1 147 LYS 147 148 148 LYS LYS A . n A 1 148 SER 148 149 149 SER SER A . n A 1 149 ALA 149 150 150 ALA ALA A . n A 1 150 LEU 150 151 151 LEU LEU A . n A 1 151 SER 151 152 152 SER SER A . n A 1 152 ILE 152 153 153 ILE ILE A . n A 1 153 VAL 153 154 154 VAL VAL A . n A 1 154 ARG 154 155 155 ARG ARG A . n A 1 155 GLN 155 156 156 GLN GLN A . n A 1 156 ASN 156 157 157 ASN ASN A . n A 1 157 ARG 157 158 158 ARG ARG A . n A 1 158 GLU 158 159 159 GLU GLU A . n A 1 159 ILE 159 160 160 ILE ILE A . n A 1 160 GLY 160 161 161 GLY GLY A . n A 1 161 PRO 161 162 162 PRO PRO A . n A 1 162 ASN 162 163 163 ASN ASN A . n A 1 163 ASP 163 164 164 ASP ASP A . n A 1 164 GLY 164 165 165 GLY GLY A . n A 1 165 PHE 165 166 166 PHE PHE A . n A 1 166 LEU 166 167 167 LEU LEU A . n A 1 167 ALA 167 168 168 ALA ALA A . n A 1 168 GLN 168 169 169 GLN GLN A . n A 1 169 LEU 169 170 170 LEU LEU A . n A 1 170 CYS 170 171 171 CYS CYS A . n A 1 171 GLN 171 172 172 GLN GLN A . n A 1 172 LEU 172 173 173 LEU LEU A . n A 1 173 ASN 173 174 174 ASN ASN A . n A 1 174 ASP 174 175 175 ASP ASP A . n A 1 175 ARG 175 176 176 ARG ARG A . n A 1 176 LEU 176 177 177 LEU LEU A . n A 1 177 ALA 177 178 178 ALA ALA A . n A 1 178 LYS 178 179 179 LYS LYS A . n A 1 179 GLU 179 180 180 GLU GLU A . n A 1 180 GLY 180 181 181 GLY GLY A . n A 1 181 LYS 181 182 182 LYS LYS A . n A 1 182 LEU 182 183 183 LEU LEU A . n A 1 183 LYS 183 184 184 LYS LYS A . n A 1 184 PRO 184 185 185 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HGT 1 201 186 HGT HGT A . C 3 BME 1 202 189 BME BME A . D 4 EDO 1 203 190 EDO EDO A . E 4 EDO 1 204 191 EDO EDO A . F 4 EDO 1 205 192 EDO EDO A . G 4 EDO 1 206 193 EDO EDO A . H 5 HOH 1 301 1 HOH HOH A . H 5 HOH 2 302 2 HOH HOH A . H 5 HOH 3 303 3 HOH HOH A . H 5 HOH 4 304 4 HOH HOH A . H 5 HOH 5 305 5 HOH HOH A . H 5 HOH 6 306 6 HOH HOH A . H 5 HOH 7 307 7 HOH HOH A . H 5 HOH 8 308 8 HOH HOH A . H 5 HOH 9 309 9 HOH HOH A . H 5 HOH 10 310 10 HOH HOH A . H 5 HOH 11 311 11 HOH HOH A . H 5 HOH 12 312 12 HOH HOH A . H 5 HOH 13 313 13 HOH HOH A . H 5 HOH 14 314 14 HOH HOH A . H 5 HOH 15 315 15 HOH HOH A . H 5 HOH 16 316 16 HOH HOH A . H 5 HOH 17 317 17 HOH HOH A . H 5 HOH 18 318 18 HOH HOH A . H 5 HOH 19 319 19 HOH HOH A . H 5 HOH 20 320 20 HOH HOH A . H 5 HOH 21 321 21 HOH HOH A . H 5 HOH 22 322 22 HOH HOH A . H 5 HOH 23 323 23 HOH HOH A . H 5 HOH 24 324 24 HOH HOH A . H 5 HOH 25 325 25 HOH HOH A . H 5 HOH 26 326 26 HOH HOH A . H 5 HOH 27 327 27 HOH HOH A . H 5 HOH 28 328 28 HOH HOH A . H 5 HOH 29 329 29 HOH HOH A . H 5 HOH 30 330 30 HOH HOH A . H 5 HOH 31 331 31 HOH HOH A . H 5 HOH 32 332 32 HOH HOH A . H 5 HOH 33 333 33 HOH HOH A . H 5 HOH 34 334 34 HOH HOH A . H 5 HOH 35 335 35 HOH HOH A . H 5 HOH 36 336 36 HOH HOH A . H 5 HOH 37 337 37 HOH HOH A . H 5 HOH 38 338 38 HOH HOH A . H 5 HOH 39 339 39 HOH HOH A . H 5 HOH 40 340 40 HOH HOH A . H 5 HOH 41 341 41 HOH HOH A . H 5 HOH 42 342 42 HOH HOH A . H 5 HOH 43 343 43 HOH HOH A . H 5 HOH 44 344 44 HOH HOH A . H 5 HOH 45 345 45 HOH HOH A . H 5 HOH 46 346 46 HOH HOH A . H 5 HOH 47 347 47 HOH HOH A . H 5 HOH 48 348 48 HOH HOH A . H 5 HOH 49 349 49 HOH HOH A . H 5 HOH 50 350 50 HOH HOH A . H 5 HOH 51 351 51 HOH HOH A . H 5 HOH 52 352 52 HOH HOH A . H 5 HOH 53 353 53 HOH HOH A . H 5 HOH 54 354 54 HOH HOH A . H 5 HOH 55 355 55 HOH HOH A . H 5 HOH 56 356 56 HOH HOH A . H 5 HOH 57 357 57 HOH HOH A . H 5 HOH 58 358 58 HOH HOH A . H 5 HOH 59 359 59 HOH HOH A . H 5 HOH 60 360 60 HOH HOH A . H 5 HOH 61 361 61 HOH HOH A . H 5 HOH 62 362 62 HOH HOH A . H 5 HOH 63 363 63 HOH HOH A . H 5 HOH 64 364 64 HOH HOH A . H 5 HOH 65 365 65 HOH HOH A . H 5 HOH 66 366 66 HOH HOH A . H 5 HOH 67 367 67 HOH HOH A . H 5 HOH 68 368 68 HOH HOH A . H 5 HOH 69 369 69 HOH HOH A . H 5 HOH 70 370 70 HOH HOH A . H 5 HOH 71 371 71 HOH HOH A . H 5 HOH 72 372 72 HOH HOH A . H 5 HOH 73 373 73 HOH HOH A . H 5 HOH 74 374 74 HOH HOH A . H 5 HOH 75 375 75 HOH HOH A . H 5 HOH 76 376 76 HOH HOH A . H 5 HOH 77 377 77 HOH HOH A . H 5 HOH 78 378 79 HOH HOH A . H 5 HOH 79 379 80 HOH HOH A . H 5 HOH 80 380 81 HOH HOH A . H 5 HOH 81 381 82 HOH HOH A . H 5 HOH 82 382 83 HOH HOH A . H 5 HOH 83 383 84 HOH HOH A . H 5 HOH 84 384 85 HOH HOH A . H 5 HOH 85 385 86 HOH HOH A . H 5 HOH 86 386 87 HOH HOH A . H 5 HOH 87 387 88 HOH HOH A . H 5 HOH 88 388 89 HOH HOH A . H 5 HOH 89 389 90 HOH HOH A . H 5 HOH 90 390 91 HOH HOH A . H 5 HOH 91 391 92 HOH HOH A . H 5 HOH 92 392 93 HOH HOH A . H 5 HOH 93 393 94 HOH HOH A . H 5 HOH 94 394 95 HOH HOH A . H 5 HOH 95 395 96 HOH HOH A . H 5 HOH 96 396 97 HOH HOH A . H 5 HOH 97 397 98 HOH HOH A . H 5 HOH 98 398 99 HOH HOH A . H 5 HOH 99 399 100 HOH HOH A . H 5 HOH 100 400 101 HOH HOH A . H 5 HOH 101 401 102 HOH HOH A . H 5 HOH 102 402 103 HOH HOH A . H 5 HOH 103 403 104 HOH HOH A . H 5 HOH 104 404 105 HOH HOH A . H 5 HOH 105 405 106 HOH HOH A . H 5 HOH 106 406 107 HOH HOH A . H 5 HOH 107 407 108 HOH HOH A . H 5 HOH 108 408 109 HOH HOH A . H 5 HOH 109 409 110 HOH HOH A . H 5 HOH 110 410 111 HOH HOH A . H 5 HOH 111 411 112 HOH HOH A . H 5 HOH 112 412 113 HOH HOH A . H 5 HOH 113 413 114 HOH HOH A . H 5 HOH 114 414 115 HOH HOH A . H 5 HOH 115 415 116 HOH HOH A . H 5 HOH 116 416 117 HOH HOH A . H 5 HOH 117 417 118 HOH HOH A . H 5 HOH 118 418 119 HOH HOH A . H 5 HOH 119 419 120 HOH HOH A . H 5 HOH 120 420 121 HOH HOH A . H 5 HOH 121 421 122 HOH HOH A . H 5 HOH 122 422 123 HOH HOH A . H 5 HOH 123 423 124 HOH HOH A . H 5 HOH 124 424 125 HOH HOH A . H 5 HOH 125 425 126 HOH HOH A . H 5 HOH 126 426 127 HOH HOH A . H 5 HOH 127 427 128 HOH HOH A . H 5 HOH 128 428 129 HOH HOH A . H 5 HOH 129 429 130 HOH HOH A . H 5 HOH 130 430 131 HOH HOH A . H 5 HOH 131 431 132 HOH HOH A . H 5 HOH 132 432 133 HOH HOH A . H 5 HOH 133 433 134 HOH HOH A . H 5 HOH 134 434 135 HOH HOH A . H 5 HOH 135 435 136 HOH HOH A . H 5 HOH 136 436 137 HOH HOH A . H 5 HOH 137 437 138 HOH HOH A . H 5 HOH 138 438 139 HOH HOH A . H 5 HOH 139 439 140 HOH HOH A . H 5 HOH 140 440 141 HOH HOH A . H 5 HOH 141 441 142 HOH HOH A . H 5 HOH 142 442 143 HOH HOH A . H 5 HOH 143 443 144 HOH HOH A . H 5 HOH 144 444 145 HOH HOH A . H 5 HOH 145 445 146 HOH HOH A . H 5 HOH 146 446 147 HOH HOH A . H 5 HOH 147 447 148 HOH HOH A . H 5 HOH 148 448 149 HOH HOH A . H 5 HOH 149 449 150 HOH HOH A . H 5 HOH 150 450 151 HOH HOH A . H 5 HOH 151 451 152 HOH HOH A . H 5 HOH 152 452 153 HOH HOH A . H 5 HOH 153 453 154 HOH HOH A . H 5 HOH 154 454 155 HOH HOH A . H 5 HOH 155 455 156 HOH HOH A . H 5 HOH 156 456 157 HOH HOH A . H 5 HOH 157 457 158 HOH HOH A . H 5 HOH 158 458 159 HOH HOH A . H 5 HOH 159 459 160 HOH HOH A . H 5 HOH 160 460 161 HOH HOH A . H 5 HOH 161 461 162 HOH HOH A . H 5 HOH 162 462 163 HOH HOH A . H 5 HOH 163 463 164 HOH HOH A . H 5 HOH 164 464 165 HOH HOH A . H 5 HOH 165 465 166 HOH HOH A . H 5 HOH 166 466 167 HOH HOH A . H 5 HOH 167 467 168 HOH HOH A . H 5 HOH 168 468 169 HOH HOH A . H 5 HOH 169 469 170 HOH HOH A . H 5 HOH 170 470 171 HOH HOH A . H 5 HOH 171 471 172 HOH HOH A . H 5 HOH 172 472 173 HOH HOH A . H 5 HOH 173 473 174 HOH HOH A . H 5 HOH 174 474 175 HOH HOH A . H 5 HOH 175 475 176 HOH HOH A . H 5 HOH 176 476 177 HOH HOH A . H 5 HOH 177 477 178 HOH HOH A . H 5 HOH 178 478 179 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CME 21 A CME 22 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' 2 A OCS 29 A OCS 30 ? CYS 'CYSTEINESULFONIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-14 2 'Structure model' 1 1 2007-04-10 3 'Structure model' 1 2 2008-04-27 4 'Structure model' 1 3 2011-07-13 5 'Structure model' 1 4 2012-04-04 6 'Structure model' 1 5 2012-05-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 3 'Structure model' 'Version format compliance' 2 4 'Structure model' 'Version format compliance' 3 5 'Structure model' Other 4 6 'Structure model' Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MAR 'data reduction' . ? 2 AUTOMAR 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 94 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 456 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.02 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 47 ? ? -105.60 76.38 2 1 ALA A 63 ? ? -140.76 34.28 3 1 CYS A 124 ? ? -137.61 -144.29 4 1 SER A 129 ? ? -124.82 -57.51 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C24 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id HGT _pdbx_validate_chiral.auth_seq_id 201 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 2 ? A SER 1 2 1 Y 1 A GLY 3 ? A GLY 2 3 1 Y 1 A SER 4 ? A SER 3 4 1 Y 1 A PHE 5 ? A PHE 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2-((2R,3S,4R,5S,6S)-3-AMINO-4,5-DIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YLAMINO)ETHOXY)STANNANETRIOL' HGT 3 BETA-MERCAPTOETHANOL BME 4 1,2-ETHANEDIOL EDO 5 water HOH #