data_2F5Y # _entry.id 2F5Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2F5Y RCSB RCSB035491 WWPDB D_1000035491 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1I92 'Structural Basis of the Nherf Pdz1-Cftr Interaction' unspecified PDB 1QAU 'Unexpected Modes of Pdz Domain Scaffolding Revealed by Structure of Nnos-Syntrophin Complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2F5Y _pdbx_database_status.recvd_initial_deposition_date 2005-11-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ugochukwu, E.' 1 'Berridge, G.' 2 'Johansson, C.' 3 'Smee, C.' 4 'Savitsky, P.' 5 'Burgess, N.' 6 'Colebrook, S.' 7 'Yang, X.' 8 'Elkins, J.' 9 'Doyle, D.' 10 'Turnbull, A.' 11 'Papagrigoriou, E.' 12 'Debreczeni, J.' 13 'Bunkoczi, G.' 14 'Gorrec, F.' 15 'von Delft, F.' 16 'Arrowsmith, C.' 17 'Sundstrom, M.' 18 'Weigelt, J.' 19 'Edwards, A.' 20 'Structural Genomics Consortium (SGC)' 21 # _citation.id primary _citation.title 'Crystal Structure of the PDZ Domain from Human RGS-3' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ugochukwu, E.' 1 primary 'Berridge, G.' 2 primary 'Johansson, C.' 3 primary 'Smee, C.' 4 primary 'Savitsky, P.' 5 primary 'Burgess, N.' 6 primary 'Colebrook, S.' 7 primary 'Yang, X.' 8 primary 'Elkins, J.' 9 primary 'Doyle, D.' 10 primary 'Turnbull, A.' 11 primary 'Papagrigoriou, E.' 12 primary 'Debreczeni, J.' 13 primary 'Bunkoczi, G.' 14 primary 'Gorrec, F.' 15 primary 'von Delft, F.' 16 primary 'Arrowsmith, C.' 17 primary 'Sundstrom, M.' 18 primary 'Weigelt, J.' 19 primary 'Edwards, A.' 20 # _cell.entry_id 2F5Y _cell.length_a 91.110 _cell.length_b 44.140 _cell.length_c 49.857 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F5Y _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'regulator of G-protein signalling 3 isoform 1' 10239.818 2 ? ? 'PDZ Domain (residues 15-103)' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMRYRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW RMVPQVKPGPD ; _entity_poly.pdbx_seq_one_letter_code_can ;SMRYRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW RMVPQVKPGPD ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ARG n 1 4 TYR n 1 5 ARG n 1 6 GLN n 1 7 ILE n 1 8 THR n 1 9 ILE n 1 10 PRO n 1 11 ARG n 1 12 GLY n 1 13 LYS n 1 14 ASP n 1 15 GLY n 1 16 PHE n 1 17 GLY n 1 18 PHE n 1 19 THR n 1 20 ILE n 1 21 CYS n 1 22 CYS n 1 23 ASP n 1 24 SER n 1 25 PRO n 1 26 VAL n 1 27 ARG n 1 28 VAL n 1 29 GLN n 1 30 ALA n 1 31 VAL n 1 32 ASP n 1 33 SER n 1 34 GLY n 1 35 GLY n 1 36 PRO n 1 37 ALA n 1 38 GLU n 1 39 ARG n 1 40 ALA n 1 41 GLY n 1 42 LEU n 1 43 GLN n 1 44 GLN n 1 45 LEU n 1 46 ASP n 1 47 THR n 1 48 VAL n 1 49 LEU n 1 50 GLN n 1 51 LEU n 1 52 ASN n 1 53 GLU n 1 54 ARG n 1 55 PRO n 1 56 VAL n 1 57 GLU n 1 58 HIS n 1 59 TRP n 1 60 LYS n 1 61 CYS n 1 62 VAL n 1 63 GLU n 1 64 LEU n 1 65 ALA n 1 66 HIS n 1 67 GLU n 1 68 ILE n 1 69 ARG n 1 70 SER n 1 71 CYS n 1 72 PRO n 1 73 SER n 1 74 GLU n 1 75 ILE n 1 76 ILE n 1 77 LEU n 1 78 LEU n 1 79 VAL n 1 80 TRP n 1 81 ARG n 1 82 MET n 1 83 VAL n 1 84 PRO n 1 85 GLN n 1 86 VAL n 1 87 LYS n 1 88 PRO n 1 89 GLY n 1 90 PRO n 1 91 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene RGS3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'BL21 (DE3)' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RGS3_HUMAN _struct_ref.pdbx_db_accession P49796 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RYRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM VPQVKPGPD ; _struct_ref.pdbx_align_begin 15 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2F5Y A 3 ? 91 ? P49796 15 ? 103 ? 15 103 2 1 2F5Y B 3 ? 91 ? P49796 15 ? 103 ? 15 103 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2F5Y SER A 1 ? UNP P49796 ? ? 'CLONING ARTIFACT' 13 1 1 2F5Y MET A 2 ? UNP P49796 ? ? 'CLONING ARTIFACT' 14 2 2 2F5Y SER B 1 ? UNP P49796 ? ? 'CLONING ARTIFACT' 13 3 2 2F5Y MET B 2 ? UNP P49796 ? ? 'CLONING ARTIFACT' 14 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2F5Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '1.6M ammonium sulphate, 0.1M MES, 10% dioxane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2005-10-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9788 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9788 # _reflns.entry_id 2F5Y _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 49.86 _reflns.d_resolution_high 2.39 _reflns.number_obs 8381 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2F5Y _refine.ls_number_reflns_obs 7967 _refine.ls_number_reflns_all 7967 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.88 _refine.ls_d_res_high 2.39 _refine.ls_percent_reflns_obs 99.65 _refine.ls_R_factor_obs 0.21698 _refine.ls_R_factor_all 0.21698 _refine.ls_R_factor_R_work 0.21481 _refine.ls_R_factor_R_free 0.26429 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 386 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 40.859 _refine.aniso_B[1][1] -2.18 _refine.aniso_B[2][2] 4.63 _refine.aniso_B[3][3] -2.45 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model '1I92.pdb, 1QAU.pdb' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.369 _refine.pdbx_overall_ESU_R_Free 0.263 _refine.overall_SU_ML 0.177 _refine.overall_SU_B 15.045 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1267 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1319 _refine_hist.d_res_high 2.39 _refine_hist.d_res_low 49.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1310 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 921 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.484 1.968 ? 1779 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.524 3.004 ? 2223 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 10.573 5.000 ? 164 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.290 21.964 ? 56 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.598 15.000 ? 223 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.663 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.203 0.200 ? 201 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1437 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 268 'X-RAY DIFFRACTION' ? r_nbd_refined 0.200 0.200 ? 223 'X-RAY DIFFRACTION' ? r_nbd_other 0.201 0.200 ? 1020 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.166 0.200 ? 612 'X-RAY DIFFRACTION' ? r_nbtor_other 0.088 0.200 ? 763 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.147 0.200 ? 54 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.137 0.200 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.272 0.200 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.093 0.200 ? 4 'X-RAY DIFFRACTION' ? r_mcbond_it 3.122 3.000 ? 856 'X-RAY DIFFRACTION' ? r_mcbond_other 1.058 3.000 ? 331 'X-RAY DIFFRACTION' ? r_mcangle_it 4.152 5.000 ? 1327 'X-RAY DIFFRACTION' ? r_scbond_it 6.807 7.000 ? 523 'X-RAY DIFFRACTION' ? r_scangle_it 8.990 11.000 ? 451 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 1042 0.55 0.50 'medium positional' 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 A 1042 0.83 2.00 'medium thermal' 1 'X-RAY DIFFRACTION' 2 ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.394 _refine_ls_shell.d_res_low 2.456 _refine_ls_shell.number_reflns_R_work 559 _refine_ls_shell.R_factor_R_work 0.244 _refine_ls_shell.percent_reflns_obs 97.20 _refine_ls_shell.R_factor_R_free 0.364 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 14 A 95 1 4 A MET 2 ? A VAL 83 ? 1 ? 2 B 14 B 95 1 4 B MET 2 ? B VAL 83 ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2F5Y _struct.title 'Crystal Structure of the PDZ Domain from Human RGS-3' _struct.pdbx_descriptor 'regulator of G-protein signalling 3 isoform 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F5Y _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'PDZ Domain, RGS-3, Human, Structural Genomics, Structural Genomics Consortium, SGC, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 35 ? GLY A 41 ? GLY A 47 GLY A 53 1 ? 7 HELX_P HELX_P2 2 LYS A 60 ? SER A 70 ? LYS A 72 SER A 82 1 ? 11 HELX_P HELX_P3 3 GLY B 35 ? GLY B 41 ? GLY B 47 GLY B 53 1 ? 7 HELX_P HELX_P4 4 LYS B 60 ? SER B 70 ? LYS B 72 SER B 82 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 B CYS 22 SG ? ? A CYS 33 B CYS 34 1_555 ? ? ? ? ? ? ? 2.032 ? disulf2 disulf ? ? A CYS 22 SG ? ? ? 1_555 B CYS 21 SG ? ? A CYS 34 B CYS 33 1_555 ? ? ? ? ? ? ? 2.035 ? disulf3 disulf ? ? A CYS 22 SG ? ? ? 1_555 B CYS 22 SG ? ? A CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? 2.726 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 24 A . ? SER 36 A PRO 25 A ? PRO 37 A 1 -0.18 2 SER 24 B . ? SER 36 B PRO 25 B ? PRO 37 B 1 -1.41 3 MET 82 B . ? MET 94 B VAL 83 B ? VAL 95 B 1 -4.97 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 5 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 3 ? PRO A 10 ? ARG A 15 PRO A 22 A 2 GLU A 74 ? ARG A 81 ? GLU A 86 ARG A 93 A 3 THR A 47 ? LEU A 51 ? THR A 59 LEU A 63 A 4 ARG A 54 ? PRO A 55 ? ARG A 66 PRO A 67 B 1 PHE A 18 ? CYS A 21 ? PHE A 30 CYS A 33 B 2 ARG A 27 ? VAL A 31 ? ARG A 39 VAL A 43 C 1 ARG B 3 ? PRO B 10 ? ARG B 15 PRO B 22 C 2 GLU B 74 ? ARG B 81 ? GLU B 86 ARG B 93 C 3 THR B 47 ? LEU B 51 ? THR B 59 LEU B 63 C 4 VAL B 26 ? VAL B 31 ? VAL B 38 VAL B 43 C 5 PHE B 18 ? CYS B 21 ? PHE B 30 CYS B 33 D 1 ARG B 3 ? PRO B 10 ? ARG B 15 PRO B 22 D 2 GLU B 74 ? ARG B 81 ? GLU B 86 ARG B 93 D 3 THR B 47 ? LEU B 51 ? THR B 59 LEU B 63 D 4 ARG B 54 ? PRO B 55 ? ARG B 66 PRO B 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 5 ? N ARG A 17 O VAL A 79 ? O VAL A 91 A 2 3 O TRP A 80 ? O TRP A 92 N THR A 47 ? N THR A 59 A 3 4 N LEU A 51 ? N LEU A 63 O ARG A 54 ? O ARG A 66 B 1 2 N CYS A 21 ? N CYS A 33 O ARG A 27 ? O ARG A 39 C 1 2 N ILE B 9 ? N ILE B 21 O ILE B 75 ? O ILE B 87 C 2 3 O LEU B 78 ? O LEU B 90 N LEU B 49 ? N LEU B 61 C 3 4 O VAL B 48 ? O VAL B 60 N VAL B 26 ? N VAL B 38 C 4 5 O ARG B 27 ? O ARG B 39 N CYS B 21 ? N CYS B 33 D 1 2 N ILE B 9 ? N ILE B 21 O ILE B 75 ? O ILE B 87 D 2 3 O LEU B 78 ? O LEU B 90 N LEU B 49 ? N LEU B 61 D 3 4 N LEU B 51 ? N LEU B 63 O ARG B 54 ? O ARG B 66 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLY A 12 ? GLY A 24 . ? 1_555 ? 2 AC1 7 LYS A 13 ? LYS A 25 . ? 1_555 ? 3 AC1 7 PRO A 36 ? PRO A 48 . ? 1_555 ? 4 AC1 7 ARG A 39 ? ARG A 51 . ? 1_555 ? 5 AC1 7 GLY B 12 ? GLY B 24 . ? 1_556 ? 6 AC1 7 LYS B 13 ? LYS B 25 . ? 1_556 ? 7 AC1 7 ASP B 14 ? ASP B 26 . ? 1_556 ? 8 AC2 6 VAL A 62 ? VAL A 74 . ? 1_555 ? 9 AC2 6 ALA A 65 ? ALA A 77 . ? 1_555 ? 10 AC2 6 HIS A 66 ? HIS A 78 . ? 1_555 ? 11 AC2 6 ARG A 69 ? ARG A 81 . ? 1_555 ? 12 AC2 6 HOH E . ? HOH A 122 . ? 1_555 ? 13 AC2 6 LYS B 60 ? LYS B 72 . ? 3_554 ? # _database_PDB_matrix.entry_id 2F5Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2F5Y _atom_sites.fract_transf_matrix[1][1] 0.010976 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022655 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020057 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 13 ? ? ? A . n A 1 2 MET 2 14 14 MET MET A . n A 1 3 ARG 3 15 15 ARG ARG A . n A 1 4 TYR 4 16 16 TYR TYR A . n A 1 5 ARG 5 17 17 ARG ARG A . n A 1 6 GLN 6 18 18 GLN GLN A . n A 1 7 ILE 7 19 19 ILE ILE A . n A 1 8 THR 8 20 20 THR THR A . n A 1 9 ILE 9 21 21 ILE ILE A . n A 1 10 PRO 10 22 22 PRO PRO A . n A 1 11 ARG 11 23 23 ARG ARG A . n A 1 12 GLY 12 24 24 GLY GLY A . n A 1 13 LYS 13 25 25 LYS LYS A . n A 1 14 ASP 14 26 26 ASP ASP A . n A 1 15 GLY 15 27 27 GLY GLY A . n A 1 16 PHE 16 28 28 PHE PHE A . n A 1 17 GLY 17 29 29 GLY GLY A . n A 1 18 PHE 18 30 30 PHE PHE A . n A 1 19 THR 19 31 31 THR THR A . n A 1 20 ILE 20 32 32 ILE ILE A . n A 1 21 CYS 21 33 33 CYS CYS A . n A 1 22 CYS 22 34 34 CYS CYS A . n A 1 23 ASP 23 35 35 ASP ASP A . n A 1 24 SER 24 36 36 SER SER A . n A 1 25 PRO 25 37 37 PRO PRO A . n A 1 26 VAL 26 38 38 VAL VAL A . n A 1 27 ARG 27 39 39 ARG ARG A . n A 1 28 VAL 28 40 40 VAL VAL A . n A 1 29 GLN 29 41 41 GLN GLN A . n A 1 30 ALA 30 42 42 ALA ALA A . n A 1 31 VAL 31 43 43 VAL VAL A . n A 1 32 ASP 32 44 44 ASP ASP A . n A 1 33 SER 33 45 45 SER SER A . n A 1 34 GLY 34 46 46 GLY GLY A . n A 1 35 GLY 35 47 47 GLY GLY A . n A 1 36 PRO 36 48 48 PRO PRO A . n A 1 37 ALA 37 49 49 ALA ALA A . n A 1 38 GLU 38 50 50 GLU GLU A . n A 1 39 ARG 39 51 51 ARG ARG A . n A 1 40 ALA 40 52 52 ALA ALA A . n A 1 41 GLY 41 53 53 GLY GLY A . n A 1 42 LEU 42 54 54 LEU LEU A . n A 1 43 GLN 43 55 55 GLN GLN A . n A 1 44 GLN 44 56 56 GLN GLN A . n A 1 45 LEU 45 57 57 LEU LEU A . n A 1 46 ASP 46 58 58 ASP ASP A . n A 1 47 THR 47 59 59 THR THR A . n A 1 48 VAL 48 60 60 VAL VAL A . n A 1 49 LEU 49 61 61 LEU LEU A . n A 1 50 GLN 50 62 62 GLN GLN A . n A 1 51 LEU 51 63 63 LEU LEU A . n A 1 52 ASN 52 64 64 ASN ASN A . n A 1 53 GLU 53 65 65 GLU GLU A . n A 1 54 ARG 54 66 66 ARG ARG A . n A 1 55 PRO 55 67 67 PRO PRO A . n A 1 56 VAL 56 68 68 VAL VAL A . n A 1 57 GLU 57 69 69 GLU GLU A . n A 1 58 HIS 58 70 70 HIS HIS A . n A 1 59 TRP 59 71 71 TRP TRP A . n A 1 60 LYS 60 72 72 LYS LYS A . n A 1 61 CYS 61 73 73 CYS CYS A . n A 1 62 VAL 62 74 74 VAL VAL A . n A 1 63 GLU 63 75 75 GLU GLU A . n A 1 64 LEU 64 76 76 LEU LEU A . n A 1 65 ALA 65 77 77 ALA ALA A . n A 1 66 HIS 66 78 78 HIS HIS A . n A 1 67 GLU 67 79 79 GLU GLU A . n A 1 68 ILE 68 80 80 ILE ILE A . n A 1 69 ARG 69 81 81 ARG ARG A . n A 1 70 SER 70 82 82 SER SER A . n A 1 71 CYS 71 83 83 CYS CYS A . n A 1 72 PRO 72 84 84 PRO PRO A . n A 1 73 SER 73 85 85 SER SER A . n A 1 74 GLU 74 86 86 GLU GLU A . n A 1 75 ILE 75 87 87 ILE ILE A . n A 1 76 ILE 76 88 88 ILE ILE A . n A 1 77 LEU 77 89 89 LEU LEU A . n A 1 78 LEU 78 90 90 LEU LEU A . n A 1 79 VAL 79 91 91 VAL VAL A . n A 1 80 TRP 80 92 92 TRP TRP A . n A 1 81 ARG 81 93 93 ARG ARG A . n A 1 82 MET 82 94 94 MET MET A . n A 1 83 VAL 83 95 95 VAL VAL A . n A 1 84 PRO 84 96 ? ? ? A . n A 1 85 GLN 85 97 ? ? ? A . n A 1 86 VAL 86 98 ? ? ? A . n A 1 87 LYS 87 99 ? ? ? A . n A 1 88 PRO 88 100 ? ? ? A . n A 1 89 GLY 89 101 ? ? ? A . n A 1 90 PRO 90 102 ? ? ? A . n A 1 91 ASP 91 103 ? ? ? A . n B 1 1 SER 1 13 ? ? ? B . n B 1 2 MET 2 14 14 MET MET B . n B 1 3 ARG 3 15 15 ARG ARG B . n B 1 4 TYR 4 16 16 TYR TYR B . n B 1 5 ARG 5 17 17 ARG ARG B . n B 1 6 GLN 6 18 18 GLN GLN B . n B 1 7 ILE 7 19 19 ILE ILE B . n B 1 8 THR 8 20 20 THR THR B . n B 1 9 ILE 9 21 21 ILE ILE B . n B 1 10 PRO 10 22 22 PRO PRO B . n B 1 11 ARG 11 23 23 ARG ARG B . n B 1 12 GLY 12 24 24 GLY GLY B . n B 1 13 LYS 13 25 25 LYS LYS B . n B 1 14 ASP 14 26 26 ASP ASP B . n B 1 15 GLY 15 27 27 GLY GLY B . n B 1 16 PHE 16 28 28 PHE PHE B . n B 1 17 GLY 17 29 29 GLY GLY B . n B 1 18 PHE 18 30 30 PHE PHE B . n B 1 19 THR 19 31 31 THR THR B . n B 1 20 ILE 20 32 32 ILE ILE B . n B 1 21 CYS 21 33 33 CYS CYS B . n B 1 22 CYS 22 34 34 CYS CYS B . n B 1 23 ASP 23 35 35 ASP ASP B . n B 1 24 SER 24 36 36 SER SER B . n B 1 25 PRO 25 37 37 PRO PRO B . n B 1 26 VAL 26 38 38 VAL VAL B . n B 1 27 ARG 27 39 39 ARG ARG B . n B 1 28 VAL 28 40 40 VAL VAL B . n B 1 29 GLN 29 41 41 GLN GLN B . n B 1 30 ALA 30 42 42 ALA ALA B . n B 1 31 VAL 31 43 43 VAL VAL B . n B 1 32 ASP 32 44 44 ASP ASP B . n B 1 33 SER 33 45 45 SER SER B . n B 1 34 GLY 34 46 46 GLY GLY B . n B 1 35 GLY 35 47 47 GLY GLY B . n B 1 36 PRO 36 48 48 PRO PRO B . n B 1 37 ALA 37 49 49 ALA ALA B . n B 1 38 GLU 38 50 50 GLU GLU B . n B 1 39 ARG 39 51 51 ARG ARG B . n B 1 40 ALA 40 52 52 ALA ALA B . n B 1 41 GLY 41 53 53 GLY GLY B . n B 1 42 LEU 42 54 54 LEU LEU B . n B 1 43 GLN 43 55 55 GLN GLN B . n B 1 44 GLN 44 56 56 GLN GLN B . n B 1 45 LEU 45 57 57 LEU LEU B . n B 1 46 ASP 46 58 58 ASP ASP B . n B 1 47 THR 47 59 59 THR THR B . n B 1 48 VAL 48 60 60 VAL VAL B . n B 1 49 LEU 49 61 61 LEU LEU B . n B 1 50 GLN 50 62 62 GLN GLN B . n B 1 51 LEU 51 63 63 LEU LEU B . n B 1 52 ASN 52 64 64 ASN ASN B . n B 1 53 GLU 53 65 65 GLU GLU B . n B 1 54 ARG 54 66 66 ARG ARG B . n B 1 55 PRO 55 67 67 PRO PRO B . n B 1 56 VAL 56 68 68 VAL VAL B . n B 1 57 GLU 57 69 69 GLU GLU B . n B 1 58 HIS 58 70 70 HIS HIS B . n B 1 59 TRP 59 71 71 TRP TRP B . n B 1 60 LYS 60 72 72 LYS LYS B . n B 1 61 CYS 61 73 73 CYS CYS B . n B 1 62 VAL 62 74 74 VAL VAL B . n B 1 63 GLU 63 75 75 GLU GLU B . n B 1 64 LEU 64 76 76 LEU LEU B . n B 1 65 ALA 65 77 77 ALA ALA B . n B 1 66 HIS 66 78 78 HIS HIS B . n B 1 67 GLU 67 79 79 GLU GLU B . n B 1 68 ILE 68 80 80 ILE ILE B . n B 1 69 ARG 69 81 81 ARG ARG B . n B 1 70 SER 70 82 82 SER SER B . n B 1 71 CYS 71 83 83 CYS CYS B . n B 1 72 PRO 72 84 84 PRO PRO B . n B 1 73 SER 73 85 85 SER SER B . n B 1 74 GLU 74 86 86 GLU GLU B . n B 1 75 ILE 75 87 87 ILE ILE B . n B 1 76 ILE 76 88 88 ILE ILE B . n B 1 77 LEU 77 89 89 LEU LEU B . n B 1 78 LEU 78 90 90 LEU LEU B . n B 1 79 VAL 79 91 91 VAL VAL B . n B 1 80 TRP 80 92 92 TRP TRP B . n B 1 81 ARG 81 93 93 ARG ARG B . n B 1 82 MET 82 94 94 MET MET B . n B 1 83 VAL 83 95 95 VAL VAL B . n B 1 84 PRO 84 96 ? ? ? B . n B 1 85 GLN 85 97 ? ? ? B . n B 1 86 VAL 86 98 ? ? ? B . n B 1 87 LYS 87 99 ? ? ? B . n B 1 88 PRO 88 100 ? ? ? B . n B 1 89 GLY 89 101 ? ? ? B . n B 1 90 PRO 90 102 ? ? ? B . n B 1 91 ASP 91 103 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 1 1 SO4 SO4 A . D 2 SO4 1 2 2 SO4 SO4 A . E 3 HOH 1 104 4 HOH HOH A . E 3 HOH 2 105 8 HOH HOH A . E 3 HOH 3 106 9 HOH HOH A . E 3 HOH 4 107 11 HOH HOH A . E 3 HOH 5 108 13 HOH HOH A . E 3 HOH 6 109 16 HOH HOH A . E 3 HOH 7 110 17 HOH HOH A . E 3 HOH 8 111 19 HOH HOH A . E 3 HOH 9 112 21 HOH HOH A . E 3 HOH 10 113 22 HOH HOH A . E 3 HOH 11 114 24 HOH HOH A . E 3 HOH 12 115 26 HOH HOH A . E 3 HOH 13 116 28 HOH HOH A . E 3 HOH 14 117 31 HOH HOH A . E 3 HOH 15 118 32 HOH HOH A . E 3 HOH 16 119 33 HOH HOH A . E 3 HOH 17 120 36 HOH HOH A . E 3 HOH 18 121 37 HOH HOH A . E 3 HOH 19 122 39 HOH HOH A . E 3 HOH 20 123 40 HOH HOH A . E 3 HOH 21 124 47 HOH HOH A . F 3 HOH 1 104 5 HOH HOH B . F 3 HOH 2 105 6 HOH HOH B . F 3 HOH 3 106 7 HOH HOH B . F 3 HOH 4 107 10 HOH HOH B . F 3 HOH 5 108 12 HOH HOH B . F 3 HOH 6 109 14 HOH HOH B . F 3 HOH 7 110 15 HOH HOH B . F 3 HOH 8 111 18 HOH HOH B . F 3 HOH 9 112 20 HOH HOH B . F 3 HOH 10 113 23 HOH HOH B . F 3 HOH 11 114 25 HOH HOH B . F 3 HOH 12 115 27 HOH HOH B . F 3 HOH 13 116 29 HOH HOH B . F 3 HOH 14 117 30 HOH HOH B . F 3 HOH 15 118 34 HOH HOH B . F 3 HOH 16 119 35 HOH HOH B . F 3 HOH 17 120 38 HOH HOH B . F 3 HOH 18 121 41 HOH HOH B . F 3 HOH 19 122 42 HOH HOH B . F 3 HOH 20 123 44 HOH HOH B . F 3 HOH 21 124 48 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E 2 1 B,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 11.5012 -4.6324 -21.7192 -0.2384 -0.1788 -0.1983 -0.0032 -0.0152 0.0170 3.3408 5.4178 6.5406 0.8394 1.0520 2.0034 0.1600 -0.1435 -0.0045 0.1205 -0.2332 -0.0215 0.1048 0.0070 0.0732 'X-RAY DIFFRACTION' 2 ? refined 11.1807 -16.5929 -43.8321 -0.1728 -0.1803 -0.1289 -0.0071 -0.0487 -0.0110 4.5605 6.6532 6.0421 -1.2058 0.3362 1.5861 -0.0224 0.3398 -0.0193 -0.3723 -0.1232 0.6764 -0.0952 -0.2881 0.1456 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 14 A 2 A 95 A 83 ? 'X-RAY DIFFRACTION' ? 2 2 B 14 B 2 B 95 B 83 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 34 ? ? 72.56 159.42 2 1 LEU A 57 ? ? 78.19 -9.31 3 1 ASN A 64 ? ? 53.20 -124.76 4 1 HIS A 70 ? ? -160.35 -14.28 5 1 CYS B 34 ? ? 80.97 161.48 6 1 LEU B 57 ? ? 75.27 -3.28 7 1 SER B 85 ? ? -108.14 -61.50 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 69 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 HIS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 70 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -105.46 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id VAL _pdbx_validate_chiral.auth_seq_id 95 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 65 ? CG ? A GLU 53 CG 2 1 Y 1 A GLU 65 ? CD ? A GLU 53 CD 3 1 Y 1 A GLU 65 ? OE1 ? A GLU 53 OE1 4 1 Y 1 A GLU 65 ? OE2 ? A GLU 53 OE2 5 1 Y 1 A LYS 72 ? NZ ? A LYS 60 NZ 6 1 Y 1 A MET 94 ? CE ? A MET 82 CE 7 1 Y 1 B ARG 17 ? NE ? B ARG 5 NE 8 1 Y 1 B ARG 17 ? CZ ? B ARG 5 CZ 9 1 Y 1 B ARG 17 ? NH1 ? B ARG 5 NH1 10 1 Y 1 B ARG 17 ? NH2 ? B ARG 5 NH2 11 1 Y 1 B LYS 25 ? CG ? B LYS 13 CG 12 1 Y 1 B LYS 25 ? CD ? B LYS 13 CD 13 1 Y 1 B LYS 25 ? CE ? B LYS 13 CE 14 1 Y 1 B LYS 25 ? NZ ? B LYS 13 NZ 15 1 Y 1 B ASP 26 ? CG ? B ASP 14 CG 16 1 Y 1 B ASP 26 ? OD1 ? B ASP 14 OD1 17 1 Y 1 B ASP 26 ? OD2 ? B ASP 14 OD2 18 1 Y 1 B GLN 56 ? OE1 ? B GLN 44 OE1 19 1 Y 1 B GLN 56 ? NE2 ? B GLN 44 NE2 20 1 Y 1 B GLU 65 ? CG ? B GLU 53 CG 21 1 Y 1 B GLU 65 ? CD ? B GLU 53 CD 22 1 Y 1 B GLU 65 ? OE1 ? B GLU 53 OE1 23 1 Y 1 B GLU 65 ? OE2 ? B GLU 53 OE2 24 1 Y 1 B GLU 86 ? OE1 ? B GLU 74 OE1 25 1 Y 1 B GLU 86 ? OE2 ? B GLU 74 OE2 26 1 Y 1 B TRP 92 ? CG ? B TRP 80 CG 27 1 Y 1 B TRP 92 ? CD1 ? B TRP 80 CD1 28 1 Y 1 B TRP 92 ? CD2 ? B TRP 80 CD2 29 1 Y 1 B TRP 92 ? NE1 ? B TRP 80 NE1 30 1 Y 1 B TRP 92 ? CE2 ? B TRP 80 CE2 31 1 Y 1 B TRP 92 ? CE3 ? B TRP 80 CE3 32 1 Y 1 B TRP 92 ? CZ2 ? B TRP 80 CZ2 33 1 Y 1 B TRP 92 ? CZ3 ? B TRP 80 CZ3 34 1 Y 1 B TRP 92 ? CH2 ? B TRP 80 CH2 35 1 Y 1 B MET 94 ? CE ? B MET 82 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 13 ? A SER 1 2 1 Y 1 A PRO 96 ? A PRO 84 3 1 Y 1 A GLN 97 ? A GLN 85 4 1 Y 1 A VAL 98 ? A VAL 86 5 1 Y 1 A LYS 99 ? A LYS 87 6 1 Y 1 A PRO 100 ? A PRO 88 7 1 Y 1 A GLY 101 ? A GLY 89 8 1 Y 1 A PRO 102 ? A PRO 90 9 1 Y 1 A ASP 103 ? A ASP 91 10 1 Y 1 B SER 13 ? B SER 1 11 1 Y 1 B PRO 96 ? B PRO 84 12 1 Y 1 B GLN 97 ? B GLN 85 13 1 Y 1 B VAL 98 ? B VAL 86 14 1 Y 1 B LYS 99 ? B LYS 87 15 1 Y 1 B PRO 100 ? B PRO 88 16 1 Y 1 B GLY 101 ? B GLY 89 17 1 Y 1 B PRO 102 ? B PRO 90 18 1 Y 1 B ASP 103 ? B ASP 91 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #