HEADER HYDROLASE 29-NOV-05 2F6D TITLE STRUCTURE OF THE COMPLEX OF A GLUCOAMYLASE FROM SACCHAROMYCOPSIS TITLE 2 FIBULIGERA WITH ACARBOSE CAVEAT 2F6D GLC B 1 HAS WRONG CHIRALITY AT ATOM C1 GLC C 1 HAS WRONG CAVEAT 2 2F6D CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOAMYLASE GLU1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUCAN 1,4-ALPHA-GLUCOSIDASE, 1,4-ALPHA-D-GLUCAN COMPND 5 GLUCOHYDROLASE; COMPND 6 EC: 3.2.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCOPSIS FIBULIGERA; SOURCE 3 ORGANISM_TAXID: 4944; SOURCE 4 STRAIN: HUT 7212; SOURCE 5 GENE: GLU1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS (ALPHA-ALPHA)6 BARREL, PROTEIN-ACARBOSE COMPLEX, SUGAR TONGS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SEVCIK,E.HOSTINOVA,A.SOLOVICOVA,J.GASPERIK,Z.DAUTER,K.S.WILSON REVDAT 5 23-AUG-23 2F6D 1 HETSYN REVDAT 4 29-JUL-20 2F6D 1 CAVEAT COMPND REMARK HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 13-JUL-11 2F6D 1 VERSN REVDAT 2 24-FEB-09 2F6D 1 VERSN REVDAT 1 23-MAY-06 2F6D 0 JRNL AUTH J.SEVCIK,E.HOSTINOVA,A.SOLOVICOVA,J.GASPERIK,Z.DAUTER, JRNL AUTH 2 K.S.WILSON JRNL TITL STRUCTURE OF THE COMPLEX OF A YEAST GLUCOAMYLASE WITH JRNL TITL 2 ACARBOSE REVEALS THE PRESENCE OF A RAW STARCH BINDING SITE JRNL TITL 3 ON THE CATALYTIC DOMAIN. JRNL REF FEBS J. V. 273 2161 2006 JRNL REFN ISSN 1742-464X JRNL PMID 16649993 JRNL DOI 10.1111/J.1742-4658.2006.05230.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SEVCIK,A.SOLOVICOVA,E.HOSTINOVA,J.GASPERIK,K.S.WILSON, REMARK 1 AUTH 2 Z.DAUTER REMARK 1 TITL STRUCTURE OF GLUCOAMYLASE FROM SACCHAROMYCOPSIS FIBULIGERA REMARK 1 TITL 2 AT 1.7 A RESOLUTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. D54 854 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 56255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3705 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1460 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.1930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.314 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4058 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3365 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5545 ; 1.609 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7887 ; 1.047 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 491 ; 5.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4611 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 824 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 984 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4155 ; 0.248 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2129 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 611 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 76 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 99 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2443 ; 0.938 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3928 ; 1.535 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1615 ; 2.237 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1617 ; 3.318 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4058 ; 1.184 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 812 ; 2.593 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3963 ; 1.820 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9096 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59266 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.490 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1AYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM ACETATE BUFFER, 15% PEG 8K, PH REMARK 280 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1348 O HOH A 1807 1.98 REMARK 500 O HOH A 1613 O HOH A 1804 2.07 REMARK 500 O HOH A 1751 O HOH A 1799 2.16 REMARK 500 O HOH A 1146 O HOH A 1806 2.17 REMARK 500 O HOH A 1565 O HOH A 1802 2.19 REMARK 500 O4 GLC C 2 O5 AC1 C 3 2.19 REMARK 500 O4 GLC C 1 O5 GLC C 2 2.19 REMARK 500 O HOH A 1252 O HOH A 1783 2.19 REMARK 500 O4 GLC B 1 O5 GLC B 2 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 160 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 241 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 268 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 300 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 310 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 312 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 329 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 386 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 87 75.47 69.10 REMARK 500 ASN A 178 39.41 -91.65 REMARK 500 ILE A 189 -54.33 -123.42 REMARK 500 ASP A 202 34.77 -99.18 REMARK 500 ASP A 239 58.45 -112.82 REMARK 500 ALA A 339 -117.08 -119.40 REMARK 500 ASP A 354 38.82 -162.45 REMARK 500 SER A 357 -81.90 -160.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 176 ILE A 177 -145.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 998 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 177 O REMARK 620 2 HOH A 999 O 86.2 REMARK 620 3 HOH A1000 O 91.5 167.5 REMARK 620 4 HOH A1350 O 169.4 88.9 91.2 REMARK 620 5 HOH A1600 O 83.1 85.4 82.2 87.1 REMARK 620 6 HOH A1613 O 100.9 103.4 89.0 89.3 170.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 997 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 310 OD1 REMARK 620 2 HOH A1620 O 97.4 REMARK 620 3 HOH A1627 O 90.9 169.3 REMARK 620 4 HOH A1646 O 90.6 95.2 91.4 REMARK 620 5 HOH A1764 O 175.5 84.7 87.5 85.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AYX RELATED DB: PDB REMARK 900 GLUCOAMYLASE FROM SACCHAROMYCOPSIS FIBULIGERA DBREF 2F6D A 1 492 UNP P08017 AMYG_SACFI 28 519 SEQRES 1 A 492 ALA TYR PRO SER PHE GLU ALA TYR SER ASN TYR LYS VAL SEQRES 2 A 492 ASP ARG THR ASP LEU GLU THR PHE LEU ASP LYS GLN LYS SEQRES 3 A 492 GLU VAL SER LEU TYR TYR LEU LEU GLN ASN ILE ALA TYR SEQRES 4 A 492 PRO GLU GLY GLN PHE ASN ASN GLY VAL PRO GLY THR VAL SEQRES 5 A 492 ILE ALA SER PRO SER THR SER ASN PRO ASP TYR TYR TYR SEQRES 6 A 492 GLN TRP THR ARG ASP SER ALA ILE THR PHE LEU THR VAL SEQRES 7 A 492 LEU SER GLU LEU GLU ASP ASN ASN PHE ASN THR THR LEU SEQRES 8 A 492 ALA LYS ALA VAL GLU TYR TYR ILE ASN THR SER TYR ASN SEQRES 9 A 492 LEU GLN ARG THR SER ASN PRO SER GLY SER PHE ASP ASP SEQRES 10 A 492 GLU ASN HIS LYS GLY LEU GLY GLU PRO LYS PHE ASN THR SEQRES 11 A 492 ASP GLY SER ALA TYR THR GLY ALA TRP GLY ARG PRO GLN SEQRES 12 A 492 ASN ASP GLY PRO ALA LEU ARG ALA TYR ALA ILE SER ARG SEQRES 13 A 492 TYR LEU ASN ASP VAL ASN SER LEU ASN GLU GLY LYS LEU SEQRES 14 A 492 VAL LEU THR ASP SER GLY ASP ILE ASN PHE SER SER THR SEQRES 15 A 492 GLU ASP ILE TYR LYS ASN ILE ILE LYS PRO ASP LEU GLU SEQRES 16 A 492 TYR VAL ILE GLY TYR TRP ASP SER THR GLY PHE ASP LEU SEQRES 17 A 492 TRP GLU GLU ASN GLN GLY ARG HIS PHE PHE THR SER LEU SEQRES 18 A 492 VAL GLN GLN LYS ALA LEU ALA TYR ALA VAL ASP ILE ALA SEQRES 19 A 492 LYS SER PHE ASP ASP GLY ASP PHE ALA ASN THR LEU SER SEQRES 20 A 492 SER THR ALA SER THR LEU GLU SER TYR LEU SER GLY SER SEQRES 21 A 492 ASP GLY GLY PHE VAL ASN THR ASP VAL ASN HIS ILE VAL SEQRES 22 A 492 GLU ASN PRO ASP LEU LEU GLN GLN ASN SER ARG GLN GLY SEQRES 23 A 492 LEU ASP SER ALA THR TYR ILE GLY PRO LEU LEU THR HIS SEQRES 24 A 492 ASP ILE GLY GLU SER SER SER THR PRO PHE ASP VAL ASP SEQRES 25 A 492 ASN GLU TYR VAL LEU GLN SER TYR TYR LEU LEU LEU GLU SEQRES 26 A 492 ASP ASN LYS ASP ARG TYR SER VAL ASN SER ALA TYR SER SEQRES 27 A 492 ALA GLY ALA ALA ILE GLY ARG TYR PRO GLU ASP VAL TYR SEQRES 28 A 492 ASN GLY ASP GLY SER SER GLU GLY ASN PRO TRP PHE LEU SEQRES 29 A 492 ALA THR ALA TYR ALA ALA GLN VAL PRO TYR LYS LEU ALA SEQRES 30 A 492 TYR ASP ALA LYS SER ALA SER ASN ASP ILE THR ILE ASN SEQRES 31 A 492 LYS ILE ASN TYR ASP PHE PHE ASN LYS TYR ILE VAL ASP SEQRES 32 A 492 LEU SER THR ILE ASN SER ALA TYR GLN SER SER ASP SER SEQRES 33 A 492 VAL THR ILE LYS SER GLY SER ASP GLU PHE ASN THR VAL SEQRES 34 A 492 ALA ASP ASN LEU VAL THR PHE GLY ASP SER PHE LEU GLN SEQRES 35 A 492 VAL ILE LEU ASP HIS ILE ASN ASP ASP GLY SER LEU ASN SEQRES 36 A 492 GLU GLN LEU ASN ARG TYR THR GLY TYR SER THR GLY ALA SEQRES 37 A 492 TYR SER LEU THR TRP SER SER GLY ALA LEU LEU GLU ALA SEQRES 38 A 492 ILE ARG LEU ARG ASN LYS VAL LYS ALA LEU ALA HET GLC B 1 12 HET GLC B 2 11 HET AC1 B 3 21 HET GLC C 1 12 HET GLC C 2 11 HET AC1 C 3 21 HET PO4 A 900 5 HET NA A 997 1 HET NA A 998 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM AC1 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETNAM 2 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETNAM 3 AC1 GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN AC1 6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX- HETSYN 2 AC1 2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL; 4,6- HETSYN 3 AC1 DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETSYN 4 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETSYN 5 AC1 GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 6 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 7 AC1 D-GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 8 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 9 AC1 GLUCOSE FORMUL 2 GLC 4(C6 H12 O6) FORMUL 2 AC1 2(C13 H23 N O8) FORMUL 4 PO4 O4 P 3- FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *810(H2 O) HELIX 1 1 ASP A 17 ASN A 36 1 20 HELIX 2 2 THR A 68 ASN A 85 1 18 HELIX 3 3 ASN A 88 ARG A 107 1 20 HELIX 4 4 ASP A 117 GLU A 125 5 9 HELIX 5 5 ASN A 144 ASN A 165 1 22 HELIX 6 6 SER A 181 ILE A 189 1 9 HELIX 7 7 ILE A 189 TRP A 201 1 13 HELIX 8 8 HIS A 216 PHE A 237 1 22 HELIX 9 9 ASP A 239 GLY A 259 1 21 HELIX 10 10 ASN A 275 GLN A 281 1 7 HELIX 11 11 SER A 289 HIS A 299 1 11 HELIX 12 12 ASN A 313 TYR A 331 1 19 HELIX 13 13 SER A 332 SER A 335 5 4 HELIX 14 14 TRP A 362 SER A 384 1 23 HELIX 15 15 ASN A 393 ILE A 401 1 9 HELIX 16 16 ASP A 403 ASN A 408 1 6 HELIX 17 17 ALA A 410 SER A 414 5 5 HELIX 18 18 SER A 423 ILE A 448 1 26 HELIX 19 19 LEU A 471 LEU A 491 1 21 SHEET 1 A 2 GLN A 66 TRP A 67 0 SHEET 2 A 2 LYS A 127 PHE A 128 -1 O PHE A 128 N GLN A 66 SHEET 1 B 2 VAL A 265 ASN A 266 0 SHEET 2 B 2 HIS A 271 ILE A 272 -1 O HIS A 271 N ASN A 266 SHEET 1 C 2 ILE A 387 ASN A 390 0 SHEET 2 C 2 SER A 416 ILE A 419 -1 O VAL A 417 N ILE A 389 SHEET 1 D 2 GLN A 457 LEU A 458 0 SHEET 2 D 2 SER A 465 THR A 466 -1 O THR A 466 N GLN A 457 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.45 LINK O4 GLC B 2 C1 AC1 B 3 1555 1555 1.46 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.45 LINK O4 GLC C 2 C1 AC1 C 3 1555 1555 1.45 LINK O ILE A 177 NA NA A 998 1555 1555 2.44 LINK OD1 ASP A 310 NA NA A 997 1555 1555 2.15 LINK NA NA A 997 O HOH A1620 1555 1555 2.20 LINK NA NA A 997 O HOH A1627 1555 1555 2.24 LINK NA NA A 997 O HOH A1646 1555 1555 2.04 LINK NA NA A 997 O HOH A1764 1555 1555 2.30 LINK NA NA A 998 O HOH A 999 1555 1555 2.52 LINK NA NA A 998 O HOH A1000 1555 1555 2.43 LINK NA NA A 998 O HOH A1350 1555 1455 2.37 LINK NA NA A 998 O HOH A1600 1555 1455 2.43 LINK NA NA A 998 O HOH A1613 1555 1555 2.33 CISPEP 1 ASN A 60 PRO A 61 0 -3.20 CISPEP 2 ARG A 141 PRO A 142 0 -6.52 CRYST1 56.580 85.350 97.510 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010255 0.00000