data_2F6E # _entry.id 2F6E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2F6E pdb_00002f6e 10.2210/pdb2f6e/pdb RCSB RCSB035507 ? ? WWPDB D_1000035507 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2F6E _pdbx_database_status.recvd_initial_deposition_date 2005-11-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ng, K.K.' 1 'Ho, J.G.' 2 # _citation.id primary _citation.title 'Crystal structure of receptor-binding C-terminal repeats from Clostridium difficile toxin A' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 102 _citation.page_first 18373 _citation.page_last 18378 _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16344467 _citation.pdbx_database_id_DOI 10.1073/pnas.0506391102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ho, J.G.' 1 ? primary 'Greco, A.' 2 ? primary 'Rupnik, M.' 3 ? primary 'Ng, K.K.' 4 ? # _cell.entry_id 2F6E _cell.length_a 42.050 _cell.length_b 42.050 _cell.length_c 132.110 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F6E _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toxin A' 14197.847 1 ? ? 'C-terminal fragment 1' ? 2 water nat water 18.015 167 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;YYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIEGQAIRYQNRFLHLLGNIYYFGNNSKA VTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAPGIY ; _entity_poly.pdbx_seq_one_letter_code_can ;YYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIEGQAIRYQNRFLHLLGNIYYFGNNSKA VTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAPGIY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 TYR n 1 3 PHE n 1 4 GLU n 1 5 PRO n 1 6 ASN n 1 7 THR n 1 8 ALA n 1 9 ILE n 1 10 GLY n 1 11 ALA n 1 12 ASN n 1 13 GLY n 1 14 TYR n 1 15 LYS n 1 16 ILE n 1 17 ILE n 1 18 ASP n 1 19 ASN n 1 20 LYS n 1 21 ASN n 1 22 PHE n 1 23 TYR n 1 24 PHE n 1 25 ARG n 1 26 ASN n 1 27 GLY n 1 28 LEU n 1 29 PRO n 1 30 GLN n 1 31 ILE n 1 32 GLY n 1 33 VAL n 1 34 PHE n 1 35 LYS n 1 36 GLY n 1 37 PRO n 1 38 ASN n 1 39 GLY n 1 40 PHE n 1 41 GLU n 1 42 TYR n 1 43 PHE n 1 44 ALA n 1 45 PRO n 1 46 ALA n 1 47 ASN n 1 48 THR n 1 49 ASP n 1 50 ALA n 1 51 ASN n 1 52 ASN n 1 53 ILE n 1 54 GLU n 1 55 GLY n 1 56 GLN n 1 57 ALA n 1 58 ILE n 1 59 ARG n 1 60 TYR n 1 61 GLN n 1 62 ASN n 1 63 ARG n 1 64 PHE n 1 65 LEU n 1 66 HIS n 1 67 LEU n 1 68 LEU n 1 69 GLY n 1 70 ASN n 1 71 ILE n 1 72 TYR n 1 73 TYR n 1 74 PHE n 1 75 GLY n 1 76 ASN n 1 77 ASN n 1 78 SER n 1 79 LYS n 1 80 ALA n 1 81 VAL n 1 82 THR n 1 83 GLY n 1 84 TRP n 1 85 GLN n 1 86 THR n 1 87 ILE n 1 88 ASN n 1 89 GLY n 1 90 ASN n 1 91 MET n 1 92 TYR n 1 93 TYR n 1 94 PHE n 1 95 MET n 1 96 PRO n 1 97 ASP n 1 98 THR n 1 99 ALA n 1 100 MET n 1 101 ALA n 1 102 ALA n 1 103 ALA n 1 104 GLY n 1 105 GLY n 1 106 LEU n 1 107 PHE n 1 108 GLU n 1 109 ILE n 1 110 ASP n 1 111 GLY n 1 112 VAL n 1 113 ILE n 1 114 TYR n 1 115 PHE n 1 116 PHE n 1 117 GLY n 1 118 VAL n 1 119 ASP n 1 120 GLY n 1 121 VAL n 1 122 LYS n 1 123 ALA n 1 124 PRO n 1 125 GLY n 1 126 ILE n 1 127 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Clostridium _entity_src_gen.pdbx_gene_src_gene 'toxA, tcdA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 48489 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium difficile' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1496 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TOXA_CLODI _struct_ref.pdbx_db_accession P16154 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YYFEPNTAMGANGYKTIDNKNFYFRNGLPQIGVFKGSNGFEYFAPANTDANNIEGQAIRYQNRFLHLLGKIYYFGNNSKA VTGWQTINGKVYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAPGIY ; _struct_ref.pdbx_align_begin 2583 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2F6E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P16154 _struct_ref_seq.db_align_beg 2583 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2709 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 128 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2F6E ILE A 9 ? UNP P16154 MET 2591 variant 10 1 1 2F6E ILE A 16 ? UNP P16154 THR 2598 variant 17 2 1 2F6E PRO A 37 ? UNP P16154 SER 2619 variant 38 3 1 2F6E ASN A 70 ? UNP P16154 LYS 2652 variant 71 4 1 2F6E ASN A 90 ? UNP P16154 LYS 2672 variant 91 5 1 2F6E MET A 91 ? UNP P16154 VAL 2673 variant 92 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2F6E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '250 mM ammonium tartrate, 100 mM sodium acetate, 20% glycerol, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-09-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979571 1.0 2 0.979741 1.0 3 1.019867 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979571,0.979741,1.019867 # _reflns.entry_id 2F6E _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 40.16 _reflns.d_resolution_high 1.85 _reflns.number_obs 10716 _reflns.number_all 10716 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_sigmaI 21.4 _reflns.B_iso_Wilson_estimate 15.0 _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 95.7 _reflns_shell.Rmerge_I_obs 0.187 _reflns_shell.pdbx_Rsym_value 0.187 _reflns_shell.meanI_over_sigI_obs 7.4 _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1015 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2F6E _refine.ls_number_reflns_obs 10199 _refine.ls_number_reflns_all 10199 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.16 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 99.04 _refine.ls_R_factor_obs 0.16191 _refine.ls_R_factor_all 0.16191 _refine.ls_R_factor_R_work 0.15979 _refine.ls_R_factor_R_free 0.205 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 516 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 13.840 _refine.aniso_B[1][1] 0.10 _refine.aniso_B[2][2] 0.10 _refine.aniso_B[3][3] -0.20 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.137 _refine.pdbx_overall_ESU_R_Free 0.130 _refine.overall_SU_ML 0.077 _refine.overall_SU_B 2.436 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 988 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 1155 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 40.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 1019 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.996 1.915 ? 1382 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.328 5.000 ? 124 'X-RAY DIFFRACTION' ? r_chiral_restr 0.074 0.200 ? 133 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 835 'X-RAY DIFFRACTION' ? r_nbd_refined 0.185 0.200 ? 393 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.127 0.200 ? 110 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.174 0.200 ? 51 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.121 0.200 ? 23 'X-RAY DIFFRACTION' ? r_mcbond_it 1.960 2.000 ? 613 'X-RAY DIFFRACTION' ? r_mcangle_it 2.929 2.500 ? 972 'X-RAY DIFFRACTION' ? r_scbond_it 3.930 3.500 ? 406 'X-RAY DIFFRACTION' ? r_scangle_it 5.745 4.500 ? 410 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.number_reflns_R_work 709 _refine_ls_shell.R_factor_R_work 0.135 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.175 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 752 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2F6E _struct.title 'Clostridium difficile Toxin A C-terminal fragment 1 (TcdA-f1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F6E _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'beta solenoid, C-terminal repetitive domain, CROPs, TOXIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 2 ? D ? 2 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 13 ? ILE A 17 ? GLY A 14 ILE A 18 A 2 LYS A 20 ? ARG A 25 ? LYS A 21 ARG A 26 A 3 LEU A 28 ? PRO A 29 ? LEU A 29 PRO A 30 B 1 GLY A 32 ? GLY A 36 ? GLY A 33 GLY A 37 B 2 GLY A 39 ? ALA A 44 ? GLY A 40 ALA A 45 B 3 GLN A 56 ? ALA A 57 ? GLN A 57 ALA A 58 C 1 ARG A 63 ? LEU A 67 ? ARG A 64 LEU A 68 C 2 ASN A 70 ? PHE A 74 ? ASN A 71 PHE A 75 D 1 GLY A 83 ? ILE A 87 ? GLY A 84 ILE A 88 D 2 ASN A 90 ? PHE A 94 ? ASN A 91 PHE A 95 E 1 GLY A 105 ? ILE A 109 ? GLY A 106 ILE A 110 E 2 VAL A 112 ? PHE A 116 ? VAL A 113 PHE A 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 15 ? N LYS A 16 O PHE A 22 ? O PHE A 23 A 2 3 N ARG A 25 ? N ARG A 26 O LEU A 28 ? O LEU A 29 B 1 2 N PHE A 34 ? N PHE A 35 O GLU A 41 ? O GLU A 42 B 2 3 N ALA A 44 ? N ALA A 45 O GLN A 56 ? O GLN A 57 C 1 2 N ARG A 63 ? N ARG A 64 O PHE A 74 ? O PHE A 75 D 1 2 N GLY A 83 ? N GLY A 84 O PHE A 94 ? O PHE A 95 E 1 2 N ILE A 109 ? N ILE A 110 O VAL A 112 ? O VAL A 113 # _database_PDB_matrix.entry_id 2F6E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2F6E _atom_sites.fract_transf_matrix[1][1] 0.023781 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023781 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007569 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 2 2 TYR TYR A . n A 1 2 TYR 2 3 3 TYR TYR A . n A 1 3 PHE 3 4 4 PHE PHE A . n A 1 4 GLU 4 5 5 GLU GLU A . n A 1 5 PRO 5 6 6 PRO PRO A . n A 1 6 ASN 6 7 7 ASN ASN A . n A 1 7 THR 7 8 8 THR THR A . n A 1 8 ALA 8 9 9 ALA ALA A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 GLY 10 11 11 GLY GLY A . n A 1 11 ALA 11 12 12 ALA ALA A . n A 1 12 ASN 12 13 13 ASN ASN A . n A 1 13 GLY 13 14 14 GLY GLY A . n A 1 14 TYR 14 15 15 TYR TYR A . n A 1 15 LYS 15 16 16 LYS LYS A . n A 1 16 ILE 16 17 17 ILE ILE A . n A 1 17 ILE 17 18 18 ILE ILE A . n A 1 18 ASP 18 19 19 ASP ASP A . n A 1 19 ASN 19 20 20 ASN ASN A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 ASN 21 22 22 ASN ASN A . n A 1 22 PHE 22 23 23 PHE PHE A . n A 1 23 TYR 23 24 24 TYR TYR A . n A 1 24 PHE 24 25 25 PHE PHE A . n A 1 25 ARG 25 26 26 ARG ARG A . n A 1 26 ASN 26 27 27 ASN ASN A . n A 1 27 GLY 27 28 28 GLY GLY A . n A 1 28 LEU 28 29 29 LEU LEU A . n A 1 29 PRO 29 30 30 PRO PRO A . n A 1 30 GLN 30 31 31 GLN GLN A . n A 1 31 ILE 31 32 32 ILE ILE A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 VAL 33 34 34 VAL VAL A . n A 1 34 PHE 34 35 35 PHE PHE A . n A 1 35 LYS 35 36 36 LYS LYS A . n A 1 36 GLY 36 37 37 GLY GLY A . n A 1 37 PRO 37 38 38 PRO PRO A . n A 1 38 ASN 38 39 39 ASN ASN A . n A 1 39 GLY 39 40 40 GLY GLY A . n A 1 40 PHE 40 41 41 PHE PHE A . n A 1 41 GLU 41 42 42 GLU GLU A . n A 1 42 TYR 42 43 43 TYR TYR A . n A 1 43 PHE 43 44 44 PHE PHE A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 PRO 45 46 46 PRO PRO A . n A 1 46 ALA 46 47 47 ALA ALA A . n A 1 47 ASN 47 48 48 ASN ASN A . n A 1 48 THR 48 49 49 THR THR A . n A 1 49 ASP 49 50 50 ASP ASP A . n A 1 50 ALA 50 51 51 ALA ALA A . n A 1 51 ASN 51 52 52 ASN ASN A . n A 1 52 ASN 52 53 53 ASN ASN A . n A 1 53 ILE 53 54 54 ILE ILE A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 GLY 55 56 56 GLY GLY A . n A 1 56 GLN 56 57 57 GLN GLN A . n A 1 57 ALA 57 58 58 ALA ALA A . n A 1 58 ILE 58 59 59 ILE ILE A . n A 1 59 ARG 59 60 60 ARG ARG A . n A 1 60 TYR 60 61 61 TYR TYR A . n A 1 61 GLN 61 62 62 GLN GLN A . n A 1 62 ASN 62 63 63 ASN ASN A . n A 1 63 ARG 63 64 64 ARG ARG A . n A 1 64 PHE 64 65 65 PHE PHE A . n A 1 65 LEU 65 66 66 LEU LEU A . n A 1 66 HIS 66 67 67 HIS HIS A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 LEU 68 69 69 LEU LEU A . n A 1 69 GLY 69 70 70 GLY GLY A . n A 1 70 ASN 70 71 71 ASN ASN A . n A 1 71 ILE 71 72 72 ILE ILE A . n A 1 72 TYR 72 73 73 TYR TYR A . n A 1 73 TYR 73 74 74 TYR TYR A . n A 1 74 PHE 74 75 75 PHE PHE A . n A 1 75 GLY 75 76 76 GLY GLY A . n A 1 76 ASN 76 77 77 ASN ASN A . n A 1 77 ASN 77 78 78 ASN ASN A . n A 1 78 SER 78 79 79 SER SER A . n A 1 79 LYS 79 80 80 LYS LYS A . n A 1 80 ALA 80 81 81 ALA ALA A . n A 1 81 VAL 81 82 82 VAL VAL A . n A 1 82 THR 82 83 83 THR THR A . n A 1 83 GLY 83 84 84 GLY GLY A . n A 1 84 TRP 84 85 85 TRP TRP A . n A 1 85 GLN 85 86 86 GLN GLN A . n A 1 86 THR 86 87 87 THR THR A . n A 1 87 ILE 87 88 88 ILE ILE A . n A 1 88 ASN 88 89 89 ASN ASN A . n A 1 89 GLY 89 90 90 GLY GLY A . n A 1 90 ASN 90 91 91 ASN ASN A . n A 1 91 MET 91 92 92 MET MET A . n A 1 92 TYR 92 93 93 TYR TYR A . n A 1 93 TYR 93 94 94 TYR TYR A . n A 1 94 PHE 94 95 95 PHE PHE A . n A 1 95 MET 95 96 96 MET MET A . n A 1 96 PRO 96 97 97 PRO PRO A . n A 1 97 ASP 97 98 98 ASP ASP A . n A 1 98 THR 98 99 99 THR THR A . n A 1 99 ALA 99 100 100 ALA ALA A . n A 1 100 MET 100 101 101 MET MET A . n A 1 101 ALA 101 102 102 ALA ALA A . n A 1 102 ALA 102 103 103 ALA ALA A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 GLY 104 105 105 GLY GLY A . n A 1 105 GLY 105 106 106 GLY GLY A . n A 1 106 LEU 106 107 107 LEU LEU A . n A 1 107 PHE 107 108 108 PHE PHE A . n A 1 108 GLU 108 109 109 GLU GLU A . n A 1 109 ILE 109 110 110 ILE ILE A . n A 1 110 ASP 110 111 111 ASP ASP A . n A 1 111 GLY 111 112 112 GLY GLY A . n A 1 112 VAL 112 113 113 VAL VAL A . n A 1 113 ILE 113 114 114 ILE ILE A . n A 1 114 TYR 114 115 115 TYR TYR A . n A 1 115 PHE 115 116 116 PHE PHE A . n A 1 116 PHE 116 117 117 PHE PHE A . n A 1 117 GLY 117 118 118 GLY GLY A . n A 1 118 VAL 118 119 119 VAL VAL A . n A 1 119 ASP 119 120 120 ASP ASP A . n A 1 120 GLY 120 121 121 GLY GLY A . n A 1 121 VAL 121 122 122 VAL VAL A . n A 1 122 LYS 122 123 123 LYS LYS A . n A 1 123 ALA 123 124 124 ALA ALA A . n A 1 124 PRO 124 125 125 PRO PRO A . n A 1 125 GLY 125 126 126 GLY GLY A . n A 1 126 ILE 126 127 ? ? ? A . n A 1 127 TYR 127 128 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 129 1 HOH HOH A . B 2 HOH 2 130 2 HOH HOH A . B 2 HOH 3 131 3 HOH HOH A . B 2 HOH 4 132 4 HOH HOH A . B 2 HOH 5 133 5 HOH HOH A . B 2 HOH 6 134 6 HOH HOH A . B 2 HOH 7 135 7 HOH HOH A . B 2 HOH 8 136 8 HOH HOH A . B 2 HOH 9 137 9 HOH HOH A . B 2 HOH 10 138 10 HOH HOH A . B 2 HOH 11 139 11 HOH HOH A . B 2 HOH 12 140 12 HOH HOH A . B 2 HOH 13 141 13 HOH HOH A . B 2 HOH 14 142 14 HOH HOH A . B 2 HOH 15 143 15 HOH HOH A . B 2 HOH 16 144 16 HOH HOH A . B 2 HOH 17 145 17 HOH HOH A . B 2 HOH 18 146 18 HOH HOH A . B 2 HOH 19 147 19 HOH HOH A . B 2 HOH 20 148 20 HOH HOH A . B 2 HOH 21 149 21 HOH HOH A . B 2 HOH 22 150 22 HOH HOH A . B 2 HOH 23 151 23 HOH HOH A . B 2 HOH 24 152 24 HOH HOH A . B 2 HOH 25 153 25 HOH HOH A . B 2 HOH 26 154 26 HOH HOH A . B 2 HOH 27 155 27 HOH HOH A . B 2 HOH 28 156 28 HOH HOH A . B 2 HOH 29 157 29 HOH HOH A . B 2 HOH 30 158 30 HOH HOH A . B 2 HOH 31 159 31 HOH HOH A . B 2 HOH 32 160 32 HOH HOH A . B 2 HOH 33 161 33 HOH HOH A . B 2 HOH 34 162 34 HOH HOH A . B 2 HOH 35 163 35 HOH HOH A . B 2 HOH 36 164 36 HOH HOH A . B 2 HOH 37 165 37 HOH HOH A . B 2 HOH 38 166 38 HOH HOH A . B 2 HOH 39 167 39 HOH HOH A . B 2 HOH 40 168 40 HOH HOH A . B 2 HOH 41 169 41 HOH HOH A . B 2 HOH 42 170 42 HOH HOH A . B 2 HOH 43 171 43 HOH HOH A . B 2 HOH 44 172 44 HOH HOH A . B 2 HOH 45 173 45 HOH HOH A . B 2 HOH 46 174 46 HOH HOH A . B 2 HOH 47 175 47 HOH HOH A . B 2 HOH 48 176 48 HOH HOH A . B 2 HOH 49 177 49 HOH HOH A . B 2 HOH 50 178 50 HOH HOH A . B 2 HOH 51 179 51 HOH HOH A . B 2 HOH 52 180 52 HOH HOH A . B 2 HOH 53 181 53 HOH HOH A . B 2 HOH 54 182 54 HOH HOH A . B 2 HOH 55 183 55 HOH HOH A . B 2 HOH 56 184 56 HOH HOH A . B 2 HOH 57 185 57 HOH HOH A . B 2 HOH 58 186 58 HOH HOH A . B 2 HOH 59 187 59 HOH HOH A . B 2 HOH 60 188 60 HOH HOH A . B 2 HOH 61 189 61 HOH HOH A . B 2 HOH 62 190 62 HOH HOH A . B 2 HOH 63 191 63 HOH HOH A . B 2 HOH 64 192 64 HOH HOH A . B 2 HOH 65 193 65 HOH HOH A . B 2 HOH 66 194 66 HOH HOH A . B 2 HOH 67 195 67 HOH HOH A . B 2 HOH 68 196 68 HOH HOH A . B 2 HOH 69 197 69 HOH HOH A . B 2 HOH 70 198 70 HOH HOH A . B 2 HOH 71 199 71 HOH HOH A . B 2 HOH 72 200 72 HOH HOH A . B 2 HOH 73 201 73 HOH HOH A . B 2 HOH 74 202 74 HOH HOH A . B 2 HOH 75 203 75 HOH HOH A . B 2 HOH 76 204 76 HOH HOH A . B 2 HOH 77 205 77 HOH HOH A . B 2 HOH 78 206 78 HOH HOH A . B 2 HOH 79 207 79 HOH HOH A . B 2 HOH 80 208 80 HOH HOH A . B 2 HOH 81 209 81 HOH HOH A . B 2 HOH 82 210 82 HOH HOH A . B 2 HOH 83 211 83 HOH HOH A . B 2 HOH 84 212 84 HOH HOH A . B 2 HOH 85 213 85 HOH HOH A . B 2 HOH 86 214 86 HOH HOH A . B 2 HOH 87 215 87 HOH HOH A . B 2 HOH 88 216 88 HOH HOH A . B 2 HOH 89 217 89 HOH HOH A . B 2 HOH 90 218 90 HOH HOH A . B 2 HOH 91 219 91 HOH HOH A . B 2 HOH 92 220 92 HOH HOH A . B 2 HOH 93 221 93 HOH HOH A . B 2 HOH 94 222 94 HOH HOH A . B 2 HOH 95 223 95 HOH HOH A . B 2 HOH 96 224 96 HOH HOH A . B 2 HOH 97 225 97 HOH HOH A . B 2 HOH 98 226 98 HOH HOH A . B 2 HOH 99 227 99 HOH HOH A . B 2 HOH 100 228 100 HOH HOH A . B 2 HOH 101 229 101 HOH HOH A . B 2 HOH 102 230 102 HOH HOH A . B 2 HOH 103 231 103 HOH HOH A . B 2 HOH 104 232 104 HOH HOH A . B 2 HOH 105 233 105 HOH HOH A . B 2 HOH 106 234 106 HOH HOH A . B 2 HOH 107 235 107 HOH HOH A . B 2 HOH 108 236 108 HOH HOH A . B 2 HOH 109 237 109 HOH HOH A . B 2 HOH 110 238 110 HOH HOH A . B 2 HOH 111 239 111 HOH HOH A . B 2 HOH 112 240 112 HOH HOH A . B 2 HOH 113 241 113 HOH HOH A . B 2 HOH 114 242 114 HOH HOH A . B 2 HOH 115 243 115 HOH HOH A . B 2 HOH 116 244 116 HOH HOH A . B 2 HOH 117 245 117 HOH HOH A . B 2 HOH 118 246 118 HOH HOH A . B 2 HOH 119 247 119 HOH HOH A . B 2 HOH 120 248 120 HOH HOH A . B 2 HOH 121 249 121 HOH HOH A . B 2 HOH 122 250 122 HOH HOH A . B 2 HOH 123 251 123 HOH HOH A . B 2 HOH 124 252 124 HOH HOH A . B 2 HOH 125 253 125 HOH HOH A . B 2 HOH 126 254 126 HOH HOH A . B 2 HOH 127 255 127 HOH HOH A . B 2 HOH 128 256 128 HOH HOH A . B 2 HOH 129 257 129 HOH HOH A . B 2 HOH 130 258 130 HOH HOH A . B 2 HOH 131 259 131 HOH HOH A . B 2 HOH 132 260 132 HOH HOH A . B 2 HOH 133 261 133 HOH HOH A . B 2 HOH 134 262 134 HOH HOH A . B 2 HOH 135 263 135 HOH HOH A . B 2 HOH 136 264 136 HOH HOH A . B 2 HOH 137 265 137 HOH HOH A . B 2 HOH 138 266 138 HOH HOH A . B 2 HOH 139 267 139 HOH HOH A . B 2 HOH 140 268 140 HOH HOH A . B 2 HOH 141 269 141 HOH HOH A . B 2 HOH 142 270 142 HOH HOH A . B 2 HOH 143 271 143 HOH HOH A . B 2 HOH 144 272 144 HOH HOH A . B 2 HOH 145 273 145 HOH HOH A . B 2 HOH 146 274 146 HOH HOH A . B 2 HOH 147 275 147 HOH HOH A . B 2 HOH 148 276 148 HOH HOH A . B 2 HOH 149 277 149 HOH HOH A . B 2 HOH 150 278 150 HOH HOH A . B 2 HOH 151 279 151 HOH HOH A . B 2 HOH 152 280 152 HOH HOH A . B 2 HOH 153 281 153 HOH HOH A . B 2 HOH 154 282 154 HOH HOH A . B 2 HOH 155 283 155 HOH HOH A . B 2 HOH 156 284 156 HOH HOH A . B 2 HOH 157 285 157 HOH HOH A . B 2 HOH 158 286 158 HOH HOH A . B 2 HOH 159 287 159 HOH HOH A . B 2 HOH 160 288 160 HOH HOH A . B 2 HOH 161 289 161 HOH HOH A . B 2 HOH 162 290 162 HOH HOH A . B 2 HOH 163 291 163 HOH HOH A . B 2 HOH 164 292 164 HOH HOH A . B 2 HOH 165 293 165 HOH HOH A . B 2 HOH 166 294 166 HOH HOH A . B 2 HOH 167 295 167 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-20 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-12-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 18.3848 _pdbx_refine_tls.origin_y 16.1024 _pdbx_refine_tls.origin_z 44.3830 _pdbx_refine_tls.T[1][1] 0.0080 _pdbx_refine_tls.T[2][2] 0.0056 _pdbx_refine_tls.T[3][3] 0.0070 _pdbx_refine_tls.T[1][2] -0.0011 _pdbx_refine_tls.T[1][3] -0.0004 _pdbx_refine_tls.T[2][3] 0.0019 _pdbx_refine_tls.L[1][1] 0.1326 _pdbx_refine_tls.L[2][2] 0.2584 _pdbx_refine_tls.L[3][3] 0.3118 _pdbx_refine_tls.L[1][2] 0.0672 _pdbx_refine_tls.L[1][3] 0.0296 _pdbx_refine_tls.L[2][3] 0.2549 _pdbx_refine_tls.S[1][1] -0.0143 _pdbx_refine_tls.S[1][2] 0.0144 _pdbx_refine_tls.S[1][3] 0.0059 _pdbx_refine_tls.S[2][1] 0.0123 _pdbx_refine_tls.S[2][2] 0.0310 _pdbx_refine_tls.S[2][3] 0.0130 _pdbx_refine_tls.S[3][1] -0.0005 _pdbx_refine_tls.S[3][2] 0.0049 _pdbx_refine_tls.S[3][3] -0.0166 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 2 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 126 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 125 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;Sequence The differences between the sequence present in this structure and the sequence in the reference database are unique to strain 48489 of Clostridium difficile. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 61 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -160.89 _pdbx_validate_torsion.psi 93.12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 127 ? A ILE 126 2 1 Y 1 A TYR 128 ? A TYR 127 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #