data_2F7D # _entry.id 2F7D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2F7D pdb_00002f7d 10.2210/pdb2f7d/pdb RCSB RCSB035542 ? ? WWPDB D_1000035542 ? ? # _pdbx_database_status.entry_id 2F7D _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-11-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Somoza, J.R.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Beta-substituted cyclohexanecarboxamide: a nonpeptidic framework for the design of potent inhibitors of cathepsin K.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 49 _citation.page_first 1066 _citation.page_last 1079 _citation.year 2006 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16451072 _citation.pdbx_database_id_DOI 10.1021/jm051059p # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Crane, S.N.' 1 ? primary 'Black, W.C.' 2 ? primary 'Palmer, J.T.' 3 ? primary 'Davis, D.E.' 4 ? primary 'Setti, E.' 5 ? primary 'Robichaud, J.' 6 ? primary 'Paquet, J.' 7 ? primary 'Oballa, R.M.' 8 ? primary 'Bayly, C.I.' 9 ? primary 'McKay, D.J.' 10 ? primary 'Somoza, J.R.' 11 ? primary 'Chauret, N.' 12 ? primary 'Seto, C.' 13 ? primary 'Scheigetz, J.' 14 ? primary 'Wesolowski, G.' 15 ? primary 'Masse, F.' 16 ? primary 'Desmarais, S.' 17 ? primary 'Ouellet, M.' 18 ? # _cell.length_a 38.125 _cell.length_b 51.150 _cell.length_c 104.245 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F7D _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 2F7D _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin K' 23554.498 1 3.4.22.38 'Y61D, V157L' ? ? 2 non-polymer syn '(1R,2R)-N-(2-AMINOETHYL)-2-{[(4-METHOXYPHENYL)SULFONYL]METHYL}CYCLOHEXANECARBOXAMIDE' 354.464 1 ? ? ? ? 3 water nat water 18.015 97 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'OC-2 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRG IDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNL NHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_seq_one_letter_code_can ;TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRG IDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNL NHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PRO n 1 3 ASP n 1 4 SER n 1 5 ILE n 1 6 ASP n 1 7 TYR n 1 8 ARG n 1 9 LYS n 1 10 LYS n 1 11 GLY n 1 12 TYR n 1 13 VAL n 1 14 THR n 1 15 PRO n 1 16 VAL n 1 17 LYS n 1 18 ASN n 1 19 GLN n 1 20 GLY n 1 21 GLN n 1 22 CYS n 1 23 GLY n 1 24 SER n 1 25 CYS n 1 26 TRP n 1 27 ALA n 1 28 PHE n 1 29 SER n 1 30 SER n 1 31 VAL n 1 32 GLY n 1 33 ALA n 1 34 LEU n 1 35 GLU n 1 36 GLY n 1 37 GLN n 1 38 LEU n 1 39 LYS n 1 40 LYS n 1 41 LYS n 1 42 THR n 1 43 GLY n 1 44 LYS n 1 45 LEU n 1 46 LEU n 1 47 ASN n 1 48 LEU n 1 49 SER n 1 50 PRO n 1 51 GLN n 1 52 ASN n 1 53 LEU n 1 54 VAL n 1 55 ASP n 1 56 CYS n 1 57 VAL n 1 58 SER n 1 59 GLU n 1 60 ASN n 1 61 ASP n 1 62 GLY n 1 63 CYS n 1 64 GLY n 1 65 GLY n 1 66 GLY n 1 67 TYR n 1 68 MET n 1 69 THR n 1 70 ASN n 1 71 ALA n 1 72 PHE n 1 73 GLN n 1 74 TYR n 1 75 VAL n 1 76 GLN n 1 77 ARG n 1 78 ASN n 1 79 ARG n 1 80 GLY n 1 81 ILE n 1 82 ASP n 1 83 SER n 1 84 GLU n 1 85 ASP n 1 86 ALA n 1 87 TYR n 1 88 PRO n 1 89 TYR n 1 90 VAL n 1 91 GLY n 1 92 GLN n 1 93 ASP n 1 94 GLU n 1 95 SER n 1 96 CYS n 1 97 MET n 1 98 TYR n 1 99 ASN n 1 100 PRO n 1 101 THR n 1 102 GLY n 1 103 LYS n 1 104 ALA n 1 105 ALA n 1 106 LYS n 1 107 CYS n 1 108 ARG n 1 109 GLY n 1 110 TYR n 1 111 ARG n 1 112 GLU n 1 113 ILE n 1 114 PRO n 1 115 GLU n 1 116 GLY n 1 117 ASN n 1 118 GLU n 1 119 LYS n 1 120 ALA n 1 121 LEU n 1 122 LYS n 1 123 ARG n 1 124 ALA n 1 125 VAL n 1 126 ALA n 1 127 ARG n 1 128 VAL n 1 129 GLY n 1 130 PRO n 1 131 VAL n 1 132 SER n 1 133 VAL n 1 134 ALA n 1 135 ILE n 1 136 ASP n 1 137 ALA n 1 138 SER n 1 139 LEU n 1 140 THR n 1 141 SER n 1 142 PHE n 1 143 GLN n 1 144 PHE n 1 145 TYR n 1 146 SER n 1 147 LYS n 1 148 GLY n 1 149 VAL n 1 150 TYR n 1 151 TYR n 1 152 ASP n 1 153 GLU n 1 154 ASN n 1 155 CYS n 1 156 SER n 1 157 SER n 1 158 ASP n 1 159 ASN n 1 160 LEU n 1 161 ASN n 1 162 HIS n 1 163 ALA n 1 164 VAL n 1 165 LEU n 1 166 ALA n 1 167 VAL n 1 168 GLY n 1 169 TYR n 1 170 GLY n 1 171 ILE n 1 172 GLN n 1 173 LYS n 1 174 GLY n 1 175 ASN n 1 176 LYS n 1 177 HIS n 1 178 TRP n 1 179 ILE n 1 180 ILE n 1 181 LYS n 1 182 ASN n 1 183 SER n 1 184 TRP n 1 185 GLY n 1 186 GLU n 1 187 SER n 1 188 TRP n 1 189 GLY n 1 190 ASN n 1 191 LYS n 1 192 GLY n 1 193 TYR n 1 194 ILE n 1 195 LEU n 1 196 MET n 1 197 ALA n 1 198 ARG n 1 199 ASN n 1 200 LYS n 1 201 ASN n 1 202 ASN n 1 203 ALA n 1 204 CYS n 1 205 GLY n 1 206 ILE n 1 207 ALA n 1 208 ASN n 1 209 LEU n 1 210 ALA n 1 211 SER n 1 212 PHE n 1 213 PRO n 1 214 LYS n 1 215 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name rabbit _entity_src_gen.gene_src_genus Oryctolagus _entity_src_gen.pdbx_gene_src_gene CTSK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Oryctolagus cuniculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9986 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATK_RABIT _struct_ref.pdbx_db_accession P43236 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 115 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2F7D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 215 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43236 _struct_ref_seq.db_align_beg 115 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 329 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 211 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2F7D ASP A 61 ? UNP P43236 TYR 175 'engineered mutation' 61 1 1 2F7D LEU A 160 ? UNP P43236 VAL 274 'engineered mutation' 157 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NOQ non-polymer . '(1R,2R)-N-(2-AMINOETHYL)-2-{[(4-METHOXYPHENYL)SULFONYL]METHYL}CYCLOHEXANECARBOXAMIDE' ? 'C17 H26 N2 O4 S' 354.464 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2F7D _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 3.9 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.18 M magnesium formate, pH 3.9, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2001-09-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2F7D _reflns.d_resolution_low 100.00 _reflns.d_resolution_high 1.90 _reflns.number_obs 16445 _reflns.percent_possible_obs 98.100 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_chi_squared 1.133 _reflns.pdbx_redundancy ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I -3.0 _reflns.number_all 16445 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.97 1.90 1371 84.500 0.284 1.042 ? ? ? ? ? ? ? ? 1 2.05 1.97 1634 99.500 0.226 1.018 ? ? ? ? ? ? ? ? 2 2.14 2.05 1645 99.700 0.191 1.049 ? ? ? ? ? ? ? ? 3 2.25 2.14 1639 99.600 0.164 1.087 ? ? ? ? ? ? ? ? 4 2.39 2.25 1658 99.900 0.134 1.134 ? ? ? ? ? ? ? ? 5 2.58 2.39 1647 99.800 0.118 1.208 ? ? ? ? ? ? ? ? 6 2.84 2.58 1670 99.900 0.104 1.189 ? ? ? ? ? ? ? ? 7 3.25 2.84 1684 100.000 0.083 1.194 ? ? ? ? ? ? ? ? 8 4.09 3.25 1705 100.000 0.067 1.203 ? ? ? ? ? ? ? ? 9 100.00 4.09 1792 97.600 0.05 1.094 ? ? ? ? ? ? ? ? 10 # _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 36.51 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.100 _refine.ls_number_reflns_obs 16224 _refine.ls_R_factor_R_work 0.174 _refine.ls_R_factor_R_free 0.205 _refine.ls_percent_reflns_R_free 9.700 _refine.ls_number_reflns_R_free 1614 _refine.B_iso_mean 22.120 _refine.aniso_B[1][1] 1.356 _refine.aniso_B[2][2] -0.984 _refine.aniso_B[3][3] -0.372 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.entry_id 2F7D _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16224 _refine.ls_R_factor_all 0.182 _refine.ls_R_factor_obs 0.182 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2F7D _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.11 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.22 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1651 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1772 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 36.51 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.193 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.9 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_obs 2383 _refine_ls_shell.number_reflns_R_free 230 _refine_ls_shell.R_factor_R_work 0.203 _refine_ls_shell.R_factor_R_free 0.237 _refine_ls_shell.R_factor_R_free_error 0.016 _refine_ls_shell.percent_reflns_obs 87.8 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 MSI_CNX_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 non.param ? 'X-RAY DIFFRACTION' 3 MSI_CNX_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 4 MSI_CNX_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2F7D _struct.title 'A mutant rabbit cathepsin K with a nitrile inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F7D _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'papain cysteine protease, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The cathepsin K monomer is probably the biological unit.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 8 ? GLY A 11 ? ARG A 8 GLY A 11 5 ? 4 HELX_P HELX_P2 2 SER A 24 ? GLY A 43 ? SER A 24 GLY A 43 1 ? 20 HELX_P HELX_P3 3 SER A 49 ? VAL A 57 ? SER A 49 VAL A 57 1 ? 9 HELX_P HELX_P4 4 ASP A 61 ? GLY A 65 ? ASP A 61 GLY A 65 5 ? 5 HELX_P HELX_P5 5 TYR A 67 ? ARG A 79 A TYR A 67 ARG A 78 1 ? 13 HELX_P HELX_P6 6 GLU A 84 ? TYR A 87 ? GLU A 83 TYR A 86 5 ? 4 HELX_P HELX_P7 7 ASN A 99 ? THR A 101 ? ASN A 98 THR A 100 5 ? 3 HELX_P HELX_P8 8 ASN A 117 ? VAL A 128 A ASN A 117 VAL A 127 1 ? 12 HELX_P HELX_P9 9 LEU A 139 ? PHE A 144 ? LEU A 138 PHE A 143 1 ? 6 HELX_P HELX_P10 10 ASN A 202 ? ILE A 206 ? ASN A 198 ILE A 202 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 56 A CYS 95 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf3 disulf ? ? A CYS 155 SG ? ? ? 1_555 A CYS 204 SG ? ? A CYS 153 A CYS 200 1_555 ? ? ? ? ? ? ? 2.027 ? ? covale1 covale none ? A CYS 25 SG ? ? ? 1_555 B NOQ . C20 ? ? A CYS 25 A NOQ 600 1_555 ? ? ? ? ? ? ? 1.751 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 5 ? ASP A 6 ? ILE A 5 ASP A 6 A 2 HIS A 162 ? GLN A 172 A HIS A 159 GLN A 168 A 3 VAL A 131 ? ILE A 135 ? VAL A 130 ILE A 134 B 1 ILE A 5 ? ASP A 6 ? ILE A 5 ASP A 6 B 2 HIS A 162 ? GLN A 172 A HIS A 159 GLN A 168 B 3 ASN A 175 D LYS A 181 ? ASN A 168 LYS A 174 B 4 TYR A 193 ? ALA A 197 ? TYR A 186 ALA A 190 B 5 VAL A 149 ? TYR A 150 ? VAL A 148 TYR A 149 C 1 ILE A 81 ? ASP A 82 ? ILE A 80 ASP A 81 C 2 LYS A 103 ? ALA A 105 ? LYS A 102 ALA A 105 D 1 TYR A 110 ? GLU A 112 ? TYR A 110 GLU A 112 D 2 SER A 211 ? PRO A 213 ? SER A 207 PRO A 209 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 5 O TYR A 169 ? O TYR A 166 A 2 3 O ALA A 166 ? O ALA A 163 N VAL A 131 ? N VAL A 130 B 1 2 N ILE A 5 ? N ILE A 5 O TYR A 169 ? O TYR A 166 B 2 3 N LEU A 165 ? N LEU A 162 O LYS A 181 ? O LYS A 174 B 3 4 N ILE A 180 ? N ILE A 173 O ILE A 194 ? O ILE A 187 B 4 5 O LEU A 195 ? O LEU A 188 N TYR A 150 ? N TYR A 149 C 1 2 N ILE A 81 ? N ILE A 80 O ALA A 104 ? O ALA A 103 D 1 2 N ARG A 111 ? N ARG A 111 O PHE A 212 ? O PHE A 208 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NOQ _struct_site.pdbx_auth_seq_id 600 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE NOQ A 600' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 SER A 4 ? SER A 4 . ? 1_455 ? 2 AC1 10 GLN A 19 ? GLN A 19 . ? 1_555 ? 3 AC1 10 GLY A 23 ? GLY A 23 . ? 1_555 ? 4 AC1 10 CYS A 25 ? CYS A 25 . ? 1_555 ? 5 AC1 10 GLU A 59 ? GLU A 59 . ? 1_555 ? 6 AC1 10 ASN A 60 ? ASN A 60 . ? 1_555 ? 7 AC1 10 GLY A 65 ? GLY A 65 . ? 1_555 ? 8 AC1 10 GLY A 66 ? GLY A 66 . ? 1_555 ? 9 AC1 10 TYR A 67 ? TYR A 67 . ? 1_555 ? 10 AC1 10 ASN A 161 ? ASN A 158 . ? 1_555 ? # _atom_sites.entry_id 2F7D _atom_sites.fract_transf_matrix[1][1] 0.026230 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019550 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009593 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ARG 79 78 78 ARG ARG A A n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 TYR 87 86 86 TYR TYR A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 TYR 89 88 88 TYR TYR A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 GLN 92 91 91 GLN GLN A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 CYS 96 95 95 CYS CYS A . n A 1 97 MET 97 96 96 MET MET A . n A 1 98 TYR 98 97 97 TYR TYR A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 PRO 100 99 99 PRO PRO A . n A 1 101 THR 101 100 100 THR THR A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 VAL 128 127 127 VAL VAL A A n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 PRO 130 129 129 PRO PRO A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 SER 132 131 131 SER SER A . n A 1 133 VAL 133 132 132 VAL VAL A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 SER 138 137 137 SER SER A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 SER 141 140 140 SER SER A . n A 1 142 PHE 142 141 141 PHE PHE A . n A 1 143 GLN 143 142 142 GLN GLN A . n A 1 144 PHE 144 143 143 PHE PHE A . n A 1 145 TYR 145 144 144 TYR TYR A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 LYS 147 146 146 LYS LYS A . n A 1 148 GLY 148 147 147 GLY GLY A . n A 1 149 VAL 149 148 148 VAL VAL A . n A 1 150 TYR 150 149 149 TYR TYR A . n A 1 151 TYR 151 150 150 TYR TYR A . n A 1 152 ASP 152 150 150 ASP ASP A A n A 1 153 GLU 153 151 151 GLU GLU A . n A 1 154 ASN 154 152 152 ASN ASN A . n A 1 155 CYS 155 153 153 CYS CYS A . n A 1 156 SER 156 154 154 SER SER A . n A 1 157 SER 157 155 155 SER SER A . n A 1 158 ASP 158 156 156 ASP ASP A . n A 1 159 ASN 159 156 156 ASN ASN A A n A 1 160 LEU 160 157 157 LEU LEU A . n A 1 161 ASN 161 158 158 ASN ASN A . n A 1 162 HIS 162 159 159 HIS HIS A . n A 1 163 ALA 163 160 160 ALA ALA A . n A 1 164 VAL 164 161 161 VAL VAL A . n A 1 165 LEU 165 162 162 LEU LEU A . n A 1 166 ALA 166 163 163 ALA ALA A . n A 1 167 VAL 167 164 164 VAL VAL A . n A 1 168 GLY 168 165 165 GLY GLY A . n A 1 169 TYR 169 166 166 TYR TYR A . n A 1 170 GLY 170 167 167 GLY GLY A . n A 1 171 ILE 171 168 168 ILE ILE A . n A 1 172 GLN 172 168 168 GLN GLN A A n A 1 173 LYS 173 168 168 LYS LYS A B n A 1 174 GLY 174 168 168 GLY GLY A C n A 1 175 ASN 175 168 168 ASN ASN A D n A 1 176 LYS 176 169 169 LYS LYS A . n A 1 177 HIS 177 170 170 HIS HIS A . n A 1 178 TRP 178 171 171 TRP TRP A . n A 1 179 ILE 179 172 172 ILE ILE A . n A 1 180 ILE 180 173 173 ILE ILE A . n A 1 181 LYS 181 174 174 LYS LYS A . n A 1 182 ASN 182 175 175 ASN ASN A . n A 1 183 SER 183 176 176 SER SER A . n A 1 184 TRP 184 177 177 TRP TRP A . n A 1 185 GLY 185 178 178 GLY GLY A . n A 1 186 GLU 186 179 179 GLU GLU A . n A 1 187 SER 187 180 180 SER SER A . n A 1 188 TRP 188 181 181 TRP TRP A . n A 1 189 GLY 189 182 182 GLY GLY A . n A 1 190 ASN 190 183 183 ASN ASN A . n A 1 191 LYS 191 184 184 LYS LYS A . n A 1 192 GLY 192 185 185 GLY GLY A . n A 1 193 TYR 193 186 186 TYR TYR A . n A 1 194 ILE 194 187 187 ILE ILE A . n A 1 195 LEU 195 188 188 LEU LEU A . n A 1 196 MET 196 189 189 MET MET A . n A 1 197 ALA 197 190 190 ALA ALA A . n A 1 198 ARG 198 191 191 ARG ARG A . n A 1 199 ASN 199 192 192 ASN ASN A . n A 1 200 LYS 200 193 193 LYS LYS A . n A 1 201 ASN 201 194 194 ASN ASN A . n A 1 202 ASN 202 198 198 ASN ASN A . n A 1 203 ALA 203 199 199 ALA ALA A . n A 1 204 CYS 204 200 200 CYS CYS A . n A 1 205 GLY 205 201 201 GLY GLY A . n A 1 206 ILE 206 202 202 ILE ILE A . n A 1 207 ALA 207 203 203 ALA ALA A . n A 1 208 ASN 208 204 204 ASN ASN A . n A 1 209 LEU 209 205 205 LEU LEU A . n A 1 210 ALA 210 206 206 ALA ALA A . n A 1 211 SER 211 207 207 SER SER A . n A 1 212 PHE 212 208 208 PHE PHE A . n A 1 213 PRO 213 209 209 PRO PRO A . n A 1 214 LYS 214 210 210 LYS LYS A . n A 1 215 MET 215 211 211 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NOQ 1 600 600 NOQ NON A . C 3 HOH 1 601 1 HOH HOH A . C 3 HOH 2 602 2 HOH HOH A . C 3 HOH 3 603 3 HOH HOH A . C 3 HOH 4 604 4 HOH HOH A . C 3 HOH 5 605 5 HOH HOH A . C 3 HOH 6 606 6 HOH HOH A . C 3 HOH 7 607 7 HOH HOH A . C 3 HOH 8 608 8 HOH HOH A . C 3 HOH 9 609 9 HOH HOH A . C 3 HOH 10 610 10 HOH HOH A . C 3 HOH 11 611 11 HOH HOH A . C 3 HOH 12 612 12 HOH HOH A . C 3 HOH 13 613 13 HOH HOH A . C 3 HOH 14 614 14 HOH HOH A . C 3 HOH 15 615 15 HOH HOH A . C 3 HOH 16 616 16 HOH HOH A . C 3 HOH 17 617 17 HOH HOH A . C 3 HOH 18 618 18 HOH HOH A . C 3 HOH 19 619 19 HOH HOH A . C 3 HOH 20 620 20 HOH HOH A . C 3 HOH 21 621 21 HOH HOH A . C 3 HOH 22 622 22 HOH HOH A . C 3 HOH 23 623 23 HOH HOH A . C 3 HOH 24 624 24 HOH HOH A . C 3 HOH 25 625 25 HOH HOH A . C 3 HOH 26 626 26 HOH HOH A . C 3 HOH 27 627 27 HOH HOH A . C 3 HOH 28 628 28 HOH HOH A . C 3 HOH 29 629 29 HOH HOH A . C 3 HOH 30 630 30 HOH HOH A . C 3 HOH 31 631 31 HOH HOH A . C 3 HOH 32 632 32 HOH HOH A . C 3 HOH 33 633 33 HOH HOH A . C 3 HOH 34 634 34 HOH HOH A . C 3 HOH 35 635 35 HOH HOH A . C 3 HOH 36 636 36 HOH HOH A . C 3 HOH 37 637 37 HOH HOH A . C 3 HOH 38 638 38 HOH HOH A . C 3 HOH 39 639 39 HOH HOH A . C 3 HOH 40 640 40 HOH HOH A . C 3 HOH 41 641 41 HOH HOH A . C 3 HOH 42 642 42 HOH HOH A . C 3 HOH 43 643 43 HOH HOH A . C 3 HOH 44 644 44 HOH HOH A . C 3 HOH 45 645 45 HOH HOH A . C 3 HOH 46 646 46 HOH HOH A . C 3 HOH 47 647 47 HOH HOH A . C 3 HOH 48 648 48 HOH HOH A . C 3 HOH 49 649 49 HOH HOH A . C 3 HOH 50 650 50 HOH HOH A . C 3 HOH 51 651 51 HOH HOH A . C 3 HOH 52 652 52 HOH HOH A . C 3 HOH 53 653 53 HOH HOH A . C 3 HOH 54 654 54 HOH HOH A . C 3 HOH 55 655 55 HOH HOH A . C 3 HOH 56 656 56 HOH HOH A . C 3 HOH 57 657 57 HOH HOH A . C 3 HOH 58 658 58 HOH HOH A . C 3 HOH 59 659 59 HOH HOH A . C 3 HOH 60 660 60 HOH HOH A . C 3 HOH 61 661 61 HOH HOH A . C 3 HOH 62 662 62 HOH HOH A . C 3 HOH 63 663 63 HOH HOH A . C 3 HOH 64 664 64 HOH HOH A . C 3 HOH 65 665 65 HOH HOH A . C 3 HOH 66 666 66 HOH HOH A . C 3 HOH 67 667 67 HOH HOH A . C 3 HOH 68 668 68 HOH HOH A . C 3 HOH 69 669 69 HOH HOH A . C 3 HOH 70 670 70 HOH HOH A . C 3 HOH 71 671 71 HOH HOH A . C 3 HOH 72 672 72 HOH HOH A . C 3 HOH 73 673 73 HOH HOH A . C 3 HOH 74 674 74 HOH HOH A . C 3 HOH 75 675 75 HOH HOH A . C 3 HOH 76 676 76 HOH HOH A . C 3 HOH 77 677 77 HOH HOH A . C 3 HOH 78 678 78 HOH HOH A . C 3 HOH 79 679 79 HOH HOH A . C 3 HOH 80 680 80 HOH HOH A . C 3 HOH 81 681 81 HOH HOH A . C 3 HOH 82 682 82 HOH HOH A . C 3 HOH 83 683 83 HOH HOH A . C 3 HOH 84 684 84 HOH HOH A . C 3 HOH 85 685 85 HOH HOH A . C 3 HOH 86 686 86 HOH HOH A . C 3 HOH 87 687 87 HOH HOH A . C 3 HOH 88 688 88 HOH HOH A . C 3 HOH 89 689 89 HOH HOH A . C 3 HOH 90 690 90 HOH HOH A . C 3 HOH 91 691 91 HOH HOH A . C 3 HOH 92 692 92 HOH HOH A . C 3 HOH 93 693 93 HOH HOH A . C 3 HOH 94 694 94 HOH HOH A . C 3 HOH 95 695 95 HOH HOH A . C 3 HOH 96 696 96 HOH HOH A . C 3 HOH 97 697 97 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-07 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_low 100.00 _diffrn_reflns.pdbx_d_res_high 1.90 _diffrn_reflns.number 16445 _diffrn_reflns.pdbx_percent_possible_obs 98.100 _diffrn_reflns.pdbx_Rmerge_I_obs 0.081 _diffrn_reflns.pdbx_chi_squared 1.133 _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_rejects ? _diffrn_reflns.pdbx_number_obs ? _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_observed_criterion ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.percent_possible_obs _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.Rsym_value 1 100.00 4.09 97.600 0.050 1.094 ? ? ? ? 1 4.09 3.25 100.000 0.067 1.203 ? ? ? ? 1 3.25 2.84 100.000 0.083 1.194 ? ? ? ? 1 2.84 2.58 99.900 0.104 1.189 ? ? ? ? 1 2.58 2.39 99.800 0.118 1.208 ? ? ? ? 1 2.39 2.25 99.900 0.134 1.134 ? ? ? ? 1 2.25 2.14 99.600 0.164 1.087 ? ? ? ? 1 2.14 2.05 99.700 0.191 1.049 ? ? ? ? 1 2.05 1.97 99.500 0.226 1.018 ? ? ? ? 1 1.97 1.90 84.500 0.284 1.042 ? ? ? ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 1.701 'OCT. 28, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CNS . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 21 ? ? -95.45 58.52 2 1 TYR A 86 ? ? -160.59 71.80 3 1 LYS A 193 ? ? -115.42 56.22 4 1 LEU A 205 ? ? -147.37 58.74 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 41 ? CD ? A LYS 41 CD 2 1 Y 0 A LYS 41 ? CE ? A LYS 41 CE 3 1 Y 0 A LYS 41 ? NZ ? A LYS 41 NZ 4 1 Y 0 A LYS 44 ? CD ? A LYS 44 CD 5 1 Y 0 A LYS 44 ? CE ? A LYS 44 CE 6 1 Y 0 A LYS 44 ? NZ ? A LYS 44 NZ 7 1 Y 0 A ARG 111 ? CG ? A ARG 111 CG 8 1 Y 0 A ARG 111 ? CD ? A ARG 111 CD 9 1 Y 0 A ARG 111 ? NE ? A ARG 111 NE 10 1 Y 0 A ARG 111 ? CZ ? A ARG 111 CZ 11 1 Y 0 A ARG 111 ? NH1 ? A ARG 111 NH1 12 1 Y 0 A ARG 111 ? NH2 ? A ARG 111 NH2 13 1 Y 0 A LYS 119 ? CD ? A LYS 119 CD 14 1 Y 0 A LYS 119 ? CE ? A LYS 119 CE 15 1 Y 0 A LYS 119 ? NZ ? A LYS 119 NZ 16 1 Y 0 A ARG 127 ? CG ? A ARG 127 CG 17 1 Y 0 A ARG 127 ? CD ? A ARG 127 CD 18 1 Y 0 A ARG 127 ? NE ? A ARG 127 NE 19 1 Y 0 A ARG 127 ? CZ ? A ARG 127 CZ 20 1 Y 0 A GLN 142 ? CD ? A GLN 143 CD 21 1 Y 0 A GLN 142 ? OE1 ? A GLN 143 OE1 22 1 Y 0 A GLN 142 ? NE2 ? A GLN 143 NE2 23 1 Y 0 A GLU 179 ? CD ? A GLU 186 CD 24 1 Y 0 A GLU 179 ? OE1 ? A GLU 186 OE1 25 1 Y 0 A GLU 179 ? OE2 ? A GLU 186 OE2 26 1 Y 0 A LYS 184 ? CD ? A LYS 191 CD 27 1 Y 0 A LYS 184 ? CE ? A LYS 191 CE 28 1 Y 0 A LYS 184 ? NZ ? A LYS 191 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(1R,2R)-N-(2-AMINOETHYL)-2-{[(4-METHOXYPHENYL)SULFONYL]METHYL}CYCLOHEXANECARBOXAMIDE' NOQ 3 water HOH #