HEADER GENE REGULATION 02-DEC-05 2F8D TITLE BENM EFFECTOR-BINDING DOMAIN CRYSTALLIZED FROM HIGH PH CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BEN AND CAT OPERON TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAYLYI; SOURCE 3 ORGANISM_TAXID: 202950; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: BENM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3 (BL21); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS BENM, LTTR, LYSR-TYPE TRANSCRIPTIONAL REGULATOR, TETRAMERIZATION, KEYWDS 2 EFFECTOR BINDING DOMAIN, INDUCER BINDING DOMAIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR O.C.EZEZIKA,S.HADDAD,E.L.NEIDLE,C.MOMANY REVDAT 6 30-AUG-23 2F8D 1 REMARK SEQADV REVDAT 5 18-OCT-17 2F8D 1 REMARK REVDAT 4 13-JUL-11 2F8D 1 VERSN REVDAT 3 08-SEP-10 2F8D 1 JRNL REVDAT 2 24-FEB-09 2F8D 1 VERSN REVDAT 1 12-DEC-06 2F8D 0 JRNL AUTH O.C.EZEZIKA,S.HADDAD,E.L.NEIDLE,C.MOMANY JRNL TITL OLIGOMERIZATION OF BENM, A LYSR-TYPE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR: STRUCTURAL BASIS FOR THE AGGREGATION OF PROTEINS JRNL TITL 3 IN THIS FAMILY. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 63 361 2007 JRNL REFN ESSN 1744-3091 JRNL PMID 17565172 JRNL DOI 10.1107/S1744309107019185 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.CLARK,S.HADDAD,E.NEIDLE,C.MOMANY REMARK 1 TITL CRYSTALLIZATION OF THE EFFECTOR-BINDING DOMAINS OF BENM AND REMARK 1 TITL 2 BENM, LYSR-TYPE TRANSCRIPTIONAL REGULATORS FROM REMARK 1 TITL 3 ACINETOBACTER SP. ADP1. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 105 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 24162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.291 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.356 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3667 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4970 ; 1.083 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 5.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;37.052 ;23.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;16.152 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.854 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2747 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1801 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2509 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 334 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2260 ; 0.740 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3591 ; 1.639 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1547 ; 3.176 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1376 ; 4.887 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 92.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.160 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : 0.00000 REMARK 200 FOR SHELL : 5.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2F6G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, GLYCEROL, IMIDAZOLE, TRIS, REMARK 280 CAPS, KBR, NACL, BENZOATE, PH 10, MICROBATCH UNDER OIL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.15300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.15300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.03000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.20050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.03000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.20050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.15300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.03000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.20050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.15300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.03000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.20050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. A DIMER IS IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 81 REMARK 465 THR A 82 REMARK 465 LYS A 83 REMARK 465 ARG A 84 REMARK 465 ILE A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 VAL A 88 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 MET B 81 REMARK 465 THR B 82 REMARK 465 LYS B 83 REMARK 465 ARG B 84 REMARK 465 ILE B 85 REMARK 465 ALA B 86 REMARK 465 SER B 87 REMARK 465 VAL B 88 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 309 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1025 O HOH B 1180 5545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 150 77.24 -102.38 REMARK 500 ASP A 151 119.33 -161.00 REMARK 500 GLN A 248 -8.53 -57.63 REMARK 500 GLU B 278 19.46 -142.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1010 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F6G RELATED DB: PDB REMARK 900 RELATED ID: 2F6P RELATED DB: PDB REMARK 900 RELATED ID: 2F78 RELATED DB: PDB REMARK 900 RELATED ID: 2F7A RELATED DB: PDB REMARK 900 RELATED ID: 2F7B RELATED DB: PDB REMARK 900 RELATED ID: 2F7C RELATED DB: PDB REMARK 900 RELATED ID: 2F97 RELATED DB: PDB DBREF 2F8D A 81 304 UNP O68014 BENM_ACIAD 81 304 DBREF 2F8D B 81 304 UNP O68014 BENM_ACIAD 81 304 SEQADV 2F8D LEU A 305 UNP O68014 CLONING ARTIFACT SEQADV 2F8D GLU A 306 UNP O68014 CLONING ARTIFACT SEQADV 2F8D HIS A 307 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS A 308 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS A 309 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS A 310 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS A 311 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS A 312 UNP O68014 EXPRESSION TAG SEQADV 2F8D LEU B 305 UNP O68014 CLONING ARTIFACT SEQADV 2F8D GLU B 306 UNP O68014 CLONING ARTIFACT SEQADV 2F8D HIS B 307 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS B 308 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS B 309 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS B 310 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS B 311 UNP O68014 EXPRESSION TAG SEQADV 2F8D HIS B 312 UNP O68014 EXPRESSION TAG SEQRES 1 A 232 MET THR LYS ARG ILE ALA SER VAL GLU LYS THR ILE ARG SEQRES 2 A 232 ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU LEU PRO SEQRES 3 A 232 ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO ASN LEU SEQRES 4 A 232 ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA GLN THR SEQRES 5 A 232 GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY PHE GLY SEQRES 6 A 232 ARG LEU LYS ILE SER ASP PRO ALA ILE LYS ARG THR LEU SEQRES 7 A 232 LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS ALA SER SEQRES 8 A 232 HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL HIS LEU SEQRES 9 A 232 ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR PRO SER SEQRES 10 A 232 SER PRO LYS PRO ASN PHE SER THR HIS VAL MET ASN ILE SEQRES 11 A 232 PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE ASN GLU SEQRES 12 A 232 VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL ALA ALA SEQRES 13 A 232 GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR GLN SER SEQRES 14 A 232 ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU LEU ASP SEQRES 15 A 232 PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL ARG ASN SEQRES 16 A 232 MET GLU GLU SER THR TYR ILE TYR SER LEU TYR GLU THR SEQRES 17 A 232 ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR GLU PRO SEQRES 18 A 232 PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 232 MET THR LYS ARG ILE ALA SER VAL GLU LYS THR ILE ARG SEQRES 2 B 232 ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU LEU PRO SEQRES 3 B 232 ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO ASN LEU SEQRES 4 B 232 ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA GLN THR SEQRES 5 B 232 GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY PHE GLY SEQRES 6 B 232 ARG LEU LYS ILE SER ASP PRO ALA ILE LYS ARG THR LEU SEQRES 7 B 232 LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS ALA SER SEQRES 8 B 232 HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL HIS LEU SEQRES 9 B 232 ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR PRO SER SEQRES 10 B 232 SER PRO LYS PRO ASN PHE SER THR HIS VAL MET ASN ILE SEQRES 11 B 232 PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE ASN GLU SEQRES 12 B 232 VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL ALA ALA SEQRES 13 B 232 GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR GLN SER SEQRES 14 B 232 ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU LEU ASP SEQRES 15 B 232 PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL ARG ASN SEQRES 16 B 232 MET GLU GLU SER THR TYR ILE TYR SER LEU TYR GLU THR SEQRES 17 B 232 ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR GLU PRO SEQRES 18 B 232 PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS HET BEZ A1001 9 HET BEZ A1002 9 HET GOL A1005 6 HET GOL A1008 6 HET GOL A1009 6 HET GOL A1010 6 HET PO4 B1004 5 HET BEZ B1003 9 HET GOL B1006 6 HET GOL B1007 6 HETNAM BEZ BENZOIC ACID HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BEZ 3(C7 H6 O2) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 9 PO4 O4 P 3- FORMUL 13 HOH *455(H2 O) HELIX 1 1 GLY A 98 GLY A 103 5 6 HELIX 2 2 LEU A 104 HIS A 116 1 13 HELIX 3 3 GLY A 127 GLU A 137 1 11 HELIX 4 4 HIS A 172 LYS A 178 5 7 HELIX 5 5 HIS A 183 ILE A 188 5 6 HELIX 6 6 ASN A 202 HIS A 214 1 13 HELIX 7 7 GLU A 226 GLY A 237 1 12 HELIX 8 8 SER A 246 ILE A 250 5 5 HELIX 9 9 SER A 279 GLY A 297 1 19 HELIX 10 10 GLY B 98 GLY B 103 5 6 HELIX 11 11 LEU B 104 HIS B 116 1 13 HELIX 12 12 GLY B 127 GLU B 137 1 11 HELIX 13 13 HIS B 172 LYS B 178 5 7 HELIX 14 14 HIS B 183 ILE B 188 5 6 HELIX 15 15 ASN B 202 HIS B 214 1 13 HELIX 16 16 GLU B 226 ALA B 236 1 11 HELIX 17 17 SER B 246 ILE B 250 5 5 HELIX 18 18 SER B 279 GLY B 297 1 19 SHEET 1 A 6 ARG A 120 GLU A 125 0 SHEET 2 A 6 THR A 91 PHE A 96 1 N ILE A 94 O TYR A 124 SHEET 3 A 6 ALA A 142 GLY A 145 1 O PHE A 144 N GLY A 95 SHEET 4 A 6 ILE A 266 ARG A 274 -1 O TYR A 270 N GLY A 145 SHEET 5 A 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 A 6 SER A 241 PRO A 244 -1 O SER A 241 N ALA A 167 SHEET 1 B 6 ARG A 120 GLU A 125 0 SHEET 2 B 6 THR A 91 PHE A 96 1 N ILE A 94 O TYR A 124 SHEET 3 B 6 ALA A 142 GLY A 145 1 O PHE A 144 N GLY A 95 SHEET 4 B 6 ILE A 266 ARG A 274 -1 O TYR A 270 N GLY A 145 SHEET 5 B 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 B 6 LEU A 255 PRO A 259 -1 O SER A 256 N VAL A 168 SHEET 1 C 2 ILE A 192 LEU A 194 0 SHEET 2 C 2 ILE A 221 GLU A 223 1 O ASN A 222 N ILE A 192 SHEET 1 D 8 ARG B 120 GLU B 125 0 SHEET 2 D 8 THR B 91 PHE B 96 1 N ILE B 94 O GLU B 122 SHEET 3 D 8 ALA B 142 GLY B 145 1 O ALA B 142 N GLY B 95 SHEET 4 D 8 ILE B 266 ARG B 274 -1 O TYR B 270 N GLY B 145 SHEET 5 D 8 ILE B 154 HIS B 169 -1 N LEU B 159 O ILE B 269 SHEET 6 D 8 ILE B 240 PRO B 244 -1 O SER B 241 N ALA B 167 SHEET 7 D 8 ILE B 192 LEU B 194 1 N LEU B 193 O ILE B 240 SHEET 8 D 8 ILE B 221 GLU B 223 1 O ASN B 222 N LEU B 194 SHEET 1 E 6 ARG B 120 GLU B 125 0 SHEET 2 E 6 THR B 91 PHE B 96 1 N ILE B 94 O GLU B 122 SHEET 3 E 6 ALA B 142 GLY B 145 1 O ALA B 142 N GLY B 95 SHEET 4 E 6 ILE B 266 ARG B 274 -1 O TYR B 270 N GLY B 145 SHEET 5 E 6 ILE B 154 HIS B 169 -1 N LEU B 159 O ILE B 269 SHEET 6 E 6 LEU B 255 PRO B 259 -1 O SER B 256 N VAL B 168 CISPEP 1 TYR A 195 PRO A 196 0 -7.45 CISPEP 2 LYS A 200 PRO A 201 0 -6.16 CISPEP 3 TYR B 195 PRO B 196 0 -11.15 CISPEP 4 LYS B 200 PRO B 201 0 -0.54 SITE 1 AC1 7 LYS A 90 ILE A 92 ASP A 141 ARG A 274 SITE 2 AC1 7 GLU A 277 SER A 279 GLU B 278 SITE 1 AC2 9 VAL A 97 SER A 99 ARG A 146 LEU A 147 SITE 2 AC2 9 ASN A 202 PHE A 203 HIS A 206 HOH A1014 SITE 3 AC2 9 HOH A1045 SITE 1 AC3 7 LEU A 104 LEU A 105 ILE A 108 PHE A 144 SITE 2 AC3 7 ARG A 160 ILE A 269 TYR A 293 SITE 1 AC4 8 LEU B 104 LEU B 105 ILE B 108 PHE B 144 SITE 2 AC4 8 LEU B 159 ARG B 160 ILE B 269 TYR B 293 SITE 1 AC5 3 TYR A 124 ARG A 139 HOH A1184 SITE 1 AC6 8 LYS B 155 THR B 157 TYR B 286 ASN B 303 SITE 2 AC6 8 TRP B 304 LEU B 305 GLU B 306 HOH B1227 SITE 1 AC7 4 TYR B 124 ARG B 139 HOH B1171 HOH B1217 SITE 1 AC8 8 LYS A 155 THR A 157 TYR A 286 ASN A 303 SITE 2 AC8 8 TRP A 304 LEU A 305 GLU A 306 HOH A1116 SITE 1 AC9 5 GLY A 98 GLU A 125 SER A 198 HOH A1045 SITE 2 AC9 5 HOH A1237 SITE 1 BC1 7 THR A 132 LYS A 148 ILE A 149 SER A 150 SITE 2 BC1 7 ASP A 151 ASN A 185 HIS A 214 CRYST1 94.060 106.401 184.306 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010630 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005430 0.00000