data_2F8K # _entry.id 2F8K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2F8K pdb_00002f8k 10.2210/pdb2f8k/pdb NDB PR0186 ? ? RCSB RCSB035585 ? ? WWPDB D_1000035585 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2D3D _pdbx_database_related.details 'Unbound Vts1 SAM domain' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2F8K _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-12-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aviv, T.' 1 'Lin, Z.' 2 'Ben-Ari, G.' 3 'Smibert, C.A.' 4 'Sicheri, F.' 5 # _citation.id primary _citation.title 'Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 13 _citation.page_first 168 _citation.page_last 176 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16429151 _citation.pdbx_database_id_DOI 10.1038/nsmb1053 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aviv, T.' 1 ? primary 'Lin, Z.' 2 ? primary 'Ben-Ari, G.' 3 ? primary 'Smibert, C.A.' 4 ? primary 'Sicheri, F.' 5 ? # _cell.entry_id 2F8K _cell.length_a 27.550 _cell.length_b 44.530 _cell.length_c 129.230 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F8K _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*AP*AP*UP*CP*UP*UP*UP*GP*AP*CP*AP*GP*AP*UP*U)-3'" 5045.008 1 ? ? ? SRE23 2 polymer man 'Protein VTS1' 10079.785 1 ? ? ? ? 3 water nat water 18.015 117 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'VTI1-2 suppressor protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no UAAUCUUUGACAGAUU UAAUCUUUGACAGAUU B ? 2 'polypeptide(L)' no no ;LSSNSSMNPKSLTDPKLLKNIPMWLKSLRLHKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKER DLIDRSAY ; ;LSSNSSMNPKSLTDPKLLKNIPMWLKSLRLHKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKER DLIDRSAY ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 A n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 U n 1 9 G n 1 10 A n 1 11 C n 1 12 A n 1 13 G n 1 14 A n 1 15 U n 1 16 U n 2 1 LEU n 2 2 SER n 2 3 SER n 2 4 ASN n 2 5 SER n 2 6 SER n 2 7 MET n 2 8 ASN n 2 9 PRO n 2 10 LYS n 2 11 SER n 2 12 LEU n 2 13 THR n 2 14 ASP n 2 15 PRO n 2 16 LYS n 2 17 LEU n 2 18 LEU n 2 19 LYS n 2 20 ASN n 2 21 ILE n 2 22 PRO n 2 23 MET n 2 24 TRP n 2 25 LEU n 2 26 LYS n 2 27 SER n 2 28 LEU n 2 29 ARG n 2 30 LEU n 2 31 HIS n 2 32 LYS n 2 33 TYR n 2 34 SER n 2 35 ASP n 2 36 ALA n 2 37 LEU n 2 38 SER n 2 39 GLY n 2 40 THR n 2 41 PRO n 2 42 TRP n 2 43 ILE n 2 44 GLU n 2 45 LEU n 2 46 ILE n 2 47 TYR n 2 48 LEU n 2 49 ASP n 2 50 ASP n 2 51 GLU n 2 52 THR n 2 53 LEU n 2 54 GLU n 2 55 LYS n 2 56 LYS n 2 57 GLY n 2 58 VAL n 2 59 LEU n 2 60 ALA n 2 61 LEU n 2 62 GLY n 2 63 ALA n 2 64 ARG n 2 65 ARG n 2 66 LYS n 2 67 LEU n 2 68 LEU n 2 69 LYS n 2 70 ALA n 2 71 PHE n 2 72 GLY n 2 73 ILE n 2 74 VAL n 2 75 ILE n 2 76 ASP n 2 77 TYR n 2 78 LYS n 2 79 GLU n 2 80 ARG n 2 81 ASP n 2 82 LEU n 2 83 ILE n 2 84 ASP n 2 85 ARG n 2 86 SER n 2 87 ALA n 2 88 TYR n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene VTS1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VTS1_YEAST Q08831 2 ;LSSNSSMNPKSLTDPKLLKNIPMWLKSLRLHKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKER DLIDRSAY ; 436 ? 2 PDB 2F8K 2F8K 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2F8K A 1 ? 88 ? Q08831 436 ? 523 ? 436 523 2 2 2F8K B 1 ? 16 ? 2F8K 0 ? 15 ? 0 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2F8K _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;2.5 M Ammonium sulfate, 50 mM MES pH 5.5, 10 mM Magnesium Acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Ammonium sulfate' ? ? ? 1 2 1 MES ? ? ? 1 3 1 'Magnesium Acetate' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'Ammonium sulfate' ? ? ? 1 6 2 MES ? ? ? 1 7 2 'Magnesium Acetate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-07-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-002' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2F8K _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 64.550 _reflns.number_all ? _reflns.number_obs 11366 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_sigmaI 11.37 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.1 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 6.43 _reflns_shell.pdbx_Rsym_value 0.139 _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.number_unique_all 1523 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 64.550 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.840 _refine.ls_number_reflns_obs 11366 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.231 _refine.ls_R_factor_R_work 0.228 _refine.ls_R_factor_R_free 0.277 _refine.ls_percent_reflns_R_free 6.900 _refine.ls_number_reflns_R_free 789 _refine.B_iso_mean 26.027 _refine.aniso_B[1][1] -0.220 _refine.aniso_B[2][2] 0.370 _refine.aniso_B[3][3] -0.150 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.932 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.pdbx_overall_ESU_R 0.200 _refine.pdbx_overall_ESU_R_Free 0.185 _refine.overall_SU_ML 0.164 _refine.overall_SU_B 12.102 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2F8K _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 11388 _refine.ls_R_factor_obs 0.23 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB Entry: 2D3D' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 672 _refine_hist.pdbx_number_atoms_nucleic_acid 317 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 1106 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 64.550 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1052 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1495 1.319 2.372 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 87 4.659 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28 40.636 23.571 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 133 15.855 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 16.707 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 183 0.069 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 669 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 482 0.197 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 709 0.298 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 79 0.189 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 29 0.137 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 11 0.148 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 439 0.407 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 692 0.701 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 781 1.055 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 802 1.595 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 743 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.367 _refine_ls_shell.R_factor_R_free 0.432 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 797 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2F8K _struct.title 'Sequence specific recognition of RNA hairpins by the SAM domain of Vts1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F8K _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/ RNA' _struct_keywords.text 'VTS1-RNA complex, SAM domain, RNA BINDING PROTEIN- RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN B 8 ? THR B 13 ? ASN A 443 THR A 448 1 ? 6 HELX_P HELX_P2 2 ASP B 14 ? LYS B 19 ? ASP A 449 LYS A 454 1 ? 6 HELX_P HELX_P3 3 ASN B 20 ? LEU B 28 ? ASN A 455 LEU A 463 1 ? 9 HELX_P HELX_P4 4 ARG B 29 ? LYS B 32 ? ARG A 464 LYS A 467 5 ? 4 HELX_P HELX_P5 5 TYR B 33 ? SER B 38 ? TYR A 468 SER A 473 1 ? 6 HELX_P HELX_P6 6 PRO B 41 ? ILE B 46 ? PRO A 476 ILE A 481 1 ? 6 HELX_P HELX_P7 7 ASP B 49 ? LYS B 56 ? ASP A 484 LYS A 491 1 ? 8 HELX_P HELX_P8 8 ALA B 60 ? ARG B 80 ? ALA A 495 ARG A 515 1 ? 21 HELX_P HELX_P9 9 ASP B 84 ? TYR B 88 ? ASP A 519 TYR A 523 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 16 N3 ? ? B A 1 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 16 O4 ? ? B A 1 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 15 N3 ? ? B A 2 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 15 O4 ? ? B A 2 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 14 N1 ? ? B U 3 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 14 N6 ? ? B U 3 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 13 N1 ? ? B C 4 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 13 O6 ? ? B C 4 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 13 N2 ? ? B C 4 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 12 N1 ? ? B U 5 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 12 N6 ? ? B U 5 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 10 N1 ? ? B U 6 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 10 N6 ? ? B U 6 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2F8K _atom_sites.fract_transf_matrix[1][1] 0.036298 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022457 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007738 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 0 0 U U B . n A 1 2 A 2 1 1 A A B . n A 1 3 A 3 2 2 A A B . n A 1 4 U 4 3 3 U U B . n A 1 5 C 5 4 4 C C B . n A 1 6 U 6 5 5 U U B . n A 1 7 U 7 6 6 U U B . n A 1 8 U 8 7 7 U U B . n A 1 9 G 9 8 8 G G B . n A 1 10 A 10 9 9 A A B . n A 1 11 C 11 10 10 C C B . n A 1 12 A 12 11 11 A A B . n A 1 13 G 13 12 12 G G B . n A 1 14 A 14 13 13 A A B . n A 1 15 U 15 14 14 U U B . n A 1 16 U 16 15 15 U U B . n B 2 1 LEU 1 436 ? ? ? A . n B 2 2 SER 2 437 ? ? ? A . n B 2 3 SER 3 438 ? ? ? A . n B 2 4 ASN 4 439 ? ? ? A . n B 2 5 SER 5 440 440 SER SER A . n B 2 6 SER 6 441 441 SER SER A . n B 2 7 MET 7 442 442 MET MET A . n B 2 8 ASN 8 443 443 ASN ASN A . n B 2 9 PRO 9 444 444 PRO PRO A . n B 2 10 LYS 10 445 445 LYS LYS A . n B 2 11 SER 11 446 446 SER SER A . n B 2 12 LEU 12 447 447 LEU LEU A . n B 2 13 THR 13 448 448 THR THR A . n B 2 14 ASP 14 449 449 ASP ASP A . n B 2 15 PRO 15 450 450 PRO PRO A . n B 2 16 LYS 16 451 451 LYS LYS A . n B 2 17 LEU 17 452 452 LEU LEU A . n B 2 18 LEU 18 453 453 LEU LEU A . n B 2 19 LYS 19 454 454 LYS LYS A . n B 2 20 ASN 20 455 455 ASN ASN A . n B 2 21 ILE 21 456 456 ILE ILE A . n B 2 22 PRO 22 457 457 PRO PRO A . n B 2 23 MET 23 458 458 MET MET A . n B 2 24 TRP 24 459 459 TRP TRP A . n B 2 25 LEU 25 460 460 LEU LEU A . n B 2 26 LYS 26 461 461 LYS LYS A . n B 2 27 SER 27 462 462 SER SER A . n B 2 28 LEU 28 463 463 LEU LEU A . n B 2 29 ARG 29 464 464 ARG ARG A . n B 2 30 LEU 30 465 465 LEU LEU A . n B 2 31 HIS 31 466 466 HIS HIS A . n B 2 32 LYS 32 467 467 LYS LYS A . n B 2 33 TYR 33 468 468 TYR TYR A . n B 2 34 SER 34 469 469 SER SER A . n B 2 35 ASP 35 470 470 ASP ASP A . n B 2 36 ALA 36 471 471 ALA ALA A . n B 2 37 LEU 37 472 472 LEU LEU A . n B 2 38 SER 38 473 473 SER SER A . n B 2 39 GLY 39 474 474 GLY GLY A . n B 2 40 THR 40 475 475 THR THR A . n B 2 41 PRO 41 476 476 PRO PRO A . n B 2 42 TRP 42 477 477 TRP TRP A . n B 2 43 ILE 43 478 478 ILE ILE A . n B 2 44 GLU 44 479 479 GLU GLU A . n B 2 45 LEU 45 480 480 LEU LEU A . n B 2 46 ILE 46 481 481 ILE ILE A . n B 2 47 TYR 47 482 482 TYR TYR A . n B 2 48 LEU 48 483 483 LEU LEU A . n B 2 49 ASP 49 484 484 ASP ASP A . n B 2 50 ASP 50 485 485 ASP ASP A . n B 2 51 GLU 51 486 486 GLU GLU A . n B 2 52 THR 52 487 487 THR THR A . n B 2 53 LEU 53 488 488 LEU LEU A . n B 2 54 GLU 54 489 489 GLU GLU A . n B 2 55 LYS 55 490 490 LYS LYS A . n B 2 56 LYS 56 491 491 LYS LYS A . n B 2 57 GLY 57 492 492 GLY GLY A . n B 2 58 VAL 58 493 493 VAL VAL A . n B 2 59 LEU 59 494 494 LEU LEU A . n B 2 60 ALA 60 495 495 ALA ALA A . n B 2 61 LEU 61 496 496 LEU LEU A . n B 2 62 GLY 62 497 497 GLY GLY A . n B 2 63 ALA 63 498 498 ALA ALA A . n B 2 64 ARG 64 499 499 ARG ARG A . n B 2 65 ARG 65 500 500 ARG ARG A . n B 2 66 LYS 66 501 501 LYS LYS A . n B 2 67 LEU 67 502 502 LEU LEU A . n B 2 68 LEU 68 503 503 LEU LEU A . n B 2 69 LYS 69 504 504 LYS LYS A . n B 2 70 ALA 70 505 505 ALA ALA A . n B 2 71 PHE 71 506 506 PHE PHE A . n B 2 72 GLY 72 507 507 GLY GLY A . n B 2 73 ILE 73 508 508 ILE ILE A . n B 2 74 VAL 74 509 509 VAL VAL A . n B 2 75 ILE 75 510 510 ILE ILE A . n B 2 76 ASP 76 511 511 ASP ASP A . n B 2 77 TYR 77 512 512 TYR TYR A . n B 2 78 LYS 78 513 513 LYS LYS A . n B 2 79 GLU 79 514 514 GLU GLU A . n B 2 80 ARG 80 515 515 ARG ARG A . n B 2 81 ASP 81 516 516 ASP ASP A . n B 2 82 LEU 82 517 517 LEU LEU A . n B 2 83 ILE 83 518 518 ILE ILE A . n B 2 84 ASP 84 519 519 ASP ASP A . n B 2 85 ARG 85 520 520 ARG ARG A . n B 2 86 SER 86 521 521 SER SER A . n B 2 87 ALA 87 522 522 ALA ALA A . n B 2 88 TYR 88 523 523 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 16 2 HOH HOH B . C 3 HOH 2 17 4 HOH HOH B . C 3 HOH 3 18 8 HOH HOH B . C 3 HOH 4 19 10 HOH HOH B . C 3 HOH 5 20 11 HOH HOH B . C 3 HOH 6 21 16 HOH HOH B . C 3 HOH 7 22 22 HOH HOH B . C 3 HOH 8 23 29 HOH HOH B . C 3 HOH 9 24 31 HOH HOH B . C 3 HOH 10 25 38 HOH HOH B . C 3 HOH 11 26 39 HOH HOH B . C 3 HOH 12 27 45 HOH HOH B . C 3 HOH 13 28 47 HOH HOH B . C 3 HOH 14 29 49 HOH HOH B . C 3 HOH 15 30 54 HOH HOH B . C 3 HOH 16 31 55 HOH HOH B . C 3 HOH 17 32 65 HOH HOH B . C 3 HOH 18 33 68 HOH HOH B . C 3 HOH 19 34 71 HOH HOH B . C 3 HOH 20 35 72 HOH HOH B . C 3 HOH 21 36 75 HOH HOH B . C 3 HOH 22 37 77 HOH HOH B . C 3 HOH 23 38 80 HOH HOH B . C 3 HOH 24 39 88 HOH HOH B . C 3 HOH 25 40 89 HOH HOH B . C 3 HOH 26 41 91 HOH HOH B . C 3 HOH 27 42 92 HOH HOH B . C 3 HOH 28 43 94 HOH HOH B . C 3 HOH 29 44 95 HOH HOH B . C 3 HOH 30 45 97 HOH HOH B . C 3 HOH 31 46 99 HOH HOH B . C 3 HOH 32 47 100 HOH HOH B . C 3 HOH 33 48 106 HOH HOH B . C 3 HOH 34 49 107 HOH HOH B . C 3 HOH 35 50 112 HOH HOH B . C 3 HOH 36 51 115 HOH HOH B . D 3 HOH 1 1 1 HOH HOH A . D 3 HOH 2 3 3 HOH HOH A . D 3 HOH 3 5 5 HOH HOH A . D 3 HOH 4 6 6 HOH HOH A . D 3 HOH 5 7 7 HOH HOH A . D 3 HOH 6 9 9 HOH HOH A . D 3 HOH 7 12 12 HOH HOH A . D 3 HOH 8 13 13 HOH HOH A . D 3 HOH 9 14 14 HOH HOH A . D 3 HOH 10 15 15 HOH HOH A . D 3 HOH 11 17 17 HOH HOH A . D 3 HOH 12 18 18 HOH HOH A . D 3 HOH 13 19 19 HOH HOH A . D 3 HOH 14 20 20 HOH HOH A . D 3 HOH 15 21 21 HOH HOH A . D 3 HOH 16 23 23 HOH HOH A . D 3 HOH 17 24 24 HOH HOH A . D 3 HOH 18 25 25 HOH HOH A . D 3 HOH 19 26 26 HOH HOH A . D 3 HOH 20 27 27 HOH HOH A . D 3 HOH 21 28 28 HOH HOH A . D 3 HOH 22 30 30 HOH HOH A . D 3 HOH 23 32 32 HOH HOH A . D 3 HOH 24 33 33 HOH HOH A . D 3 HOH 25 34 34 HOH HOH A . D 3 HOH 26 35 35 HOH HOH A . D 3 HOH 27 36 36 HOH HOH A . D 3 HOH 28 37 37 HOH HOH A . D 3 HOH 29 40 40 HOH HOH A . D 3 HOH 30 41 41 HOH HOH A . D 3 HOH 31 42 42 HOH HOH A . D 3 HOH 32 43 43 HOH HOH A . D 3 HOH 33 44 44 HOH HOH A . D 3 HOH 34 46 46 HOH HOH A . D 3 HOH 35 48 48 HOH HOH A . D 3 HOH 36 50 50 HOH HOH A . D 3 HOH 37 51 51 HOH HOH A . D 3 HOH 38 52 52 HOH HOH A . D 3 HOH 39 53 53 HOH HOH A . D 3 HOH 40 56 56 HOH HOH A . D 3 HOH 41 57 57 HOH HOH A . D 3 HOH 42 58 58 HOH HOH A . D 3 HOH 43 59 59 HOH HOH A . D 3 HOH 44 60 60 HOH HOH A . D 3 HOH 45 61 61 HOH HOH A . D 3 HOH 46 62 62 HOH HOH A . D 3 HOH 47 63 63 HOH HOH A . D 3 HOH 48 64 64 HOH HOH A . D 3 HOH 49 66 66 HOH HOH A . D 3 HOH 50 67 67 HOH HOH A . D 3 HOH 51 69 69 HOH HOH A . D 3 HOH 52 70 70 HOH HOH A . D 3 HOH 53 73 73 HOH HOH A . D 3 HOH 54 74 74 HOH HOH A . D 3 HOH 55 76 76 HOH HOH A . D 3 HOH 56 78 78 HOH HOH A . D 3 HOH 57 79 79 HOH HOH A . D 3 HOH 58 81 81 HOH HOH A . D 3 HOH 59 82 82 HOH HOH A . D 3 HOH 60 83 83 HOH HOH A . D 3 HOH 61 84 84 HOH HOH A . D 3 HOH 62 85 85 HOH HOH A . D 3 HOH 63 86 86 HOH HOH A . D 3 HOH 64 87 87 HOH HOH A . D 3 HOH 65 90 90 HOH HOH A . D 3 HOH 66 93 93 HOH HOH A . D 3 HOH 67 96 96 HOH HOH A . D 3 HOH 68 98 98 HOH HOH A . D 3 HOH 69 101 101 HOH HOH A . D 3 HOH 70 102 102 HOH HOH A . D 3 HOH 71 103 103 HOH HOH A . D 3 HOH 72 104 104 HOH HOH A . D 3 HOH 73 105 105 HOH HOH A . D 3 HOH 74 108 108 HOH HOH A . D 3 HOH 75 109 109 HOH HOH A . D 3 HOH 76 110 110 HOH HOH A . D 3 HOH 77 111 111 HOH HOH A . D 3 HOH 78 113 113 HOH HOH A . D 3 HOH 79 114 114 HOH HOH A . D 3 HOH 80 116 116 HOH HOH A . D 3 HOH 81 117 117 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -0.9117 1.2516 -8.7157 -0.1696 -0.1432 -0.1122 0.0177 0.0206 -0.0227 3.6242 2.2335 4.9683 0.7746 2.7053 1.7920 0.0681 0.0722 -0.1403 0.0536 -0.0336 -0.1097 0.0642 0.1006 0.0206 'X-RAY DIFFRACTION' 2 ? refined -0.5616 3.5713 -29.5236 0.0139 -0.0096 -0.0677 -0.0122 -0.0016 0.0132 2.0831 4.0011 5.5671 -1.9243 1.5107 -2.0701 -0.1061 0.1561 -0.0499 0.4642 0.3536 -0.3510 -0.0527 -0.6100 0.3721 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 B 5 B 88 ALL A 440 A 523 'X-RAY DIFFRACTION' ? 2 2 A 1 A 16 ALL B 0 B 15 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 PDB_EXTRACT 1.701 'OCT. 28, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 CrystalClear '(MSC/RIGAKU)' ? ? ? ? 'data reduction' ? ? ? 3 XDS . ? ? ? ? 'data scaling' ? ? ? 4 PHASER . ? ? ? ? phasing ? ? ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 440 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 ND2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASN _pdbx_validate_close_contact.auth_seq_id_2 443 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 A _pdbx_validate_close_contact.dist 2.08 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 7 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 7 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 7 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 113.25 _pdbx_validate_rmsd_angle.angle_target_value 108.50 _pdbx_validate_rmsd_angle.angle_deviation 4.75 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 442 ? ? -95.14 32.90 2 1 MET A 442 ? ? -95.14 33.28 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B C 10 ? "C5'" ? A C 11 "C5'" 2 1 Y 1 B C 10 ? "C4'" ? A C 11 "C4'" 3 1 Y 1 B C 10 ? "O4'" ? A C 11 "O4'" 4 1 Y 1 B C 10 ? "C3'" ? A C 11 "C3'" 5 1 Y 1 B C 10 ? "O3'" ? A C 11 "O3'" 6 1 Y 1 B C 10 ? "C2'" ? A C 11 "C2'" 7 1 Y 1 B C 10 ? "O2'" ? A C 11 "O2'" 8 1 Y 1 B C 10 ? "C1'" ? A C 11 "C1'" 9 1 Y 1 B C 10 ? N1 ? A C 11 N1 10 1 Y 1 B C 10 ? C2 ? A C 11 C2 11 1 Y 1 B C 10 ? O2 ? A C 11 O2 12 1 Y 1 B C 10 ? N3 ? A C 11 N3 13 1 Y 1 B C 10 ? C4 ? A C 11 C4 14 1 Y 1 B C 10 ? N4 ? A C 11 N4 15 1 Y 1 B C 10 ? C5 ? A C 11 C5 16 1 Y 1 B C 10 ? C6 ? A C 11 C6 17 1 Y 1 A SER 440 ? OG ? B SER 5 OG 18 1 Y 1 A LYS 445 ? CG ? B LYS 10 CG 19 1 Y 1 A LYS 445 ? CD ? B LYS 10 CD 20 1 Y 1 A LYS 445 ? CE ? B LYS 10 CE 21 1 Y 1 A LYS 445 ? NZ ? B LYS 10 NZ 22 1 Y 1 A LYS 490 ? CG ? B LYS 55 CG 23 1 Y 1 A LYS 490 ? CD ? B LYS 55 CD 24 1 Y 1 A LYS 490 ? CE ? B LYS 55 CE 25 1 Y 1 A LYS 490 ? NZ ? B LYS 55 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 436 ? B LEU 1 2 1 Y 1 A SER 437 ? B SER 2 3 1 Y 1 A SER 438 ? B SER 3 4 1 Y 1 A ASN 439 ? B ASN 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLU N N N N 184 GLU CA C N S 185 GLU C C N N 186 GLU O O N N 187 GLU CB C N N 188 GLU CG C N N 189 GLU CD C N N 190 GLU OE1 O N N 191 GLU OE2 O N N 192 GLU OXT O N N 193 GLU H H N N 194 GLU H2 H N N 195 GLU HA H N N 196 GLU HB2 H N N 197 GLU HB3 H N N 198 GLU HG2 H N N 199 GLU HG3 H N N 200 GLU HE2 H N N 201 GLU HXT H N N 202 GLY N N N N 203 GLY CA C N N 204 GLY C C N N 205 GLY O O N N 206 GLY OXT O N N 207 GLY H H N N 208 GLY H2 H N N 209 GLY HA2 H N N 210 GLY HA3 H N N 211 GLY HXT H N N 212 HIS N N N N 213 HIS CA C N S 214 HIS C C N N 215 HIS O O N N 216 HIS CB C N N 217 HIS CG C Y N 218 HIS ND1 N Y N 219 HIS CD2 C Y N 220 HIS CE1 C Y N 221 HIS NE2 N Y N 222 HIS OXT O N N 223 HIS H H N N 224 HIS H2 H N N 225 HIS HA H N N 226 HIS HB2 H N N 227 HIS HB3 H N N 228 HIS HD1 H N N 229 HIS HD2 H N N 230 HIS HE1 H N N 231 HIS HE2 H N N 232 HIS HXT H N N 233 HOH O O N N 234 HOH H1 H N N 235 HOH H2 H N N 236 ILE N N N N 237 ILE CA C N S 238 ILE C C N N 239 ILE O O N N 240 ILE CB C N S 241 ILE CG1 C N N 242 ILE CG2 C N N 243 ILE CD1 C N N 244 ILE OXT O N N 245 ILE H H N N 246 ILE H2 H N N 247 ILE HA H N N 248 ILE HB H N N 249 ILE HG12 H N N 250 ILE HG13 H N N 251 ILE HG21 H N N 252 ILE HG22 H N N 253 ILE HG23 H N N 254 ILE HD11 H N N 255 ILE HD12 H N N 256 ILE HD13 H N N 257 ILE HXT H N N 258 LEU N N N N 259 LEU CA C N S 260 LEU C C N N 261 LEU O O N N 262 LEU CB C N N 263 LEU CG C N N 264 LEU CD1 C N N 265 LEU CD2 C N N 266 LEU OXT O N N 267 LEU H H N N 268 LEU H2 H N N 269 LEU HA H N N 270 LEU HB2 H N N 271 LEU HB3 H N N 272 LEU HG H N N 273 LEU HD11 H N N 274 LEU HD12 H N N 275 LEU HD13 H N N 276 LEU HD21 H N N 277 LEU HD22 H N N 278 LEU HD23 H N N 279 LEU HXT H N N 280 LYS N N N N 281 LYS CA C N S 282 LYS C C N N 283 LYS O O N N 284 LYS CB C N N 285 LYS CG C N N 286 LYS CD C N N 287 LYS CE C N N 288 LYS NZ N N N 289 LYS OXT O N N 290 LYS H H N N 291 LYS H2 H N N 292 LYS HA H N N 293 LYS HB2 H N N 294 LYS HB3 H N N 295 LYS HG2 H N N 296 LYS HG3 H N N 297 LYS HD2 H N N 298 LYS HD3 H N N 299 LYS HE2 H N N 300 LYS HE3 H N N 301 LYS HZ1 H N N 302 LYS HZ2 H N N 303 LYS HZ3 H N N 304 LYS HXT H N N 305 MET N N N N 306 MET CA C N S 307 MET C C N N 308 MET O O N N 309 MET CB C N N 310 MET CG C N N 311 MET SD S N N 312 MET CE C N N 313 MET OXT O N N 314 MET H H N N 315 MET H2 H N N 316 MET HA H N N 317 MET HB2 H N N 318 MET HB3 H N N 319 MET HG2 H N N 320 MET HG3 H N N 321 MET HE1 H N N 322 MET HE2 H N N 323 MET HE3 H N N 324 MET HXT H N N 325 PHE N N N N 326 PHE CA C N S 327 PHE C C N N 328 PHE O O N N 329 PHE CB C N N 330 PHE CG C Y N 331 PHE CD1 C Y N 332 PHE CD2 C Y N 333 PHE CE1 C Y N 334 PHE CE2 C Y N 335 PHE CZ C Y N 336 PHE OXT O N N 337 PHE H H N N 338 PHE H2 H N N 339 PHE HA H N N 340 PHE HB2 H N N 341 PHE HB3 H N N 342 PHE HD1 H N N 343 PHE HD2 H N N 344 PHE HE1 H N N 345 PHE HE2 H N N 346 PHE HZ H N N 347 PHE HXT H N N 348 PRO N N N N 349 PRO CA C N S 350 PRO C C N N 351 PRO O O N N 352 PRO CB C N N 353 PRO CG C N N 354 PRO CD C N N 355 PRO OXT O N N 356 PRO H H N N 357 PRO HA H N N 358 PRO HB2 H N N 359 PRO HB3 H N N 360 PRO HG2 H N N 361 PRO HG3 H N N 362 PRO HD2 H N N 363 PRO HD3 H N N 364 PRO HXT H N N 365 SER N N N N 366 SER CA C N S 367 SER C C N N 368 SER O O N N 369 SER CB C N N 370 SER OG O N N 371 SER OXT O N N 372 SER H H N N 373 SER H2 H N N 374 SER HA H N N 375 SER HB2 H N N 376 SER HB3 H N N 377 SER HG H N N 378 SER HXT H N N 379 THR N N N N 380 THR CA C N S 381 THR C C N N 382 THR O O N N 383 THR CB C N R 384 THR OG1 O N N 385 THR CG2 C N N 386 THR OXT O N N 387 THR H H N N 388 THR H2 H N N 389 THR HA H N N 390 THR HB H N N 391 THR HG1 H N N 392 THR HG21 H N N 393 THR HG22 H N N 394 THR HG23 H N N 395 THR HXT H N N 396 TRP N N N N 397 TRP CA C N S 398 TRP C C N N 399 TRP O O N N 400 TRP CB C N N 401 TRP CG C Y N 402 TRP CD1 C Y N 403 TRP CD2 C Y N 404 TRP NE1 N Y N 405 TRP CE2 C Y N 406 TRP CE3 C Y N 407 TRP CZ2 C Y N 408 TRP CZ3 C Y N 409 TRP CH2 C Y N 410 TRP OXT O N N 411 TRP H H N N 412 TRP H2 H N N 413 TRP HA H N N 414 TRP HB2 H N N 415 TRP HB3 H N N 416 TRP HD1 H N N 417 TRP HE1 H N N 418 TRP HE3 H N N 419 TRP HZ2 H N N 420 TRP HZ3 H N N 421 TRP HH2 H N N 422 TRP HXT H N N 423 TYR N N N N 424 TYR CA C N S 425 TYR C C N N 426 TYR O O N N 427 TYR CB C N N 428 TYR CG C Y N 429 TYR CD1 C Y N 430 TYR CD2 C Y N 431 TYR CE1 C Y N 432 TYR CE2 C Y N 433 TYR CZ C Y N 434 TYR OH O N N 435 TYR OXT O N N 436 TYR H H N N 437 TYR H2 H N N 438 TYR HA H N N 439 TYR HB2 H N N 440 TYR HB3 H N N 441 TYR HD1 H N N 442 TYR HD2 H N N 443 TYR HE1 H N N 444 TYR HE2 H N N 445 TYR HH H N N 446 TYR HXT H N N 447 U OP3 O N N 448 U P P N N 449 U OP1 O N N 450 U OP2 O N N 451 U "O5'" O N N 452 U "C5'" C N N 453 U "C4'" C N R 454 U "O4'" O N N 455 U "C3'" C N S 456 U "O3'" O N N 457 U "C2'" C N R 458 U "O2'" O N N 459 U "C1'" C N R 460 U N1 N N N 461 U C2 C N N 462 U O2 O N N 463 U N3 N N N 464 U C4 C N N 465 U O4 O N N 466 U C5 C N N 467 U C6 C N N 468 U HOP3 H N N 469 U HOP2 H N N 470 U "H5'" H N N 471 U "H5''" H N N 472 U "H4'" H N N 473 U "H3'" H N N 474 U "HO3'" H N N 475 U "H2'" H N N 476 U "HO2'" H N N 477 U "H1'" H N N 478 U H3 H N N 479 U H5 H N N 480 U H6 H N N 481 VAL N N N N 482 VAL CA C N S 483 VAL C C N N 484 VAL O O N N 485 VAL CB C N N 486 VAL CG1 C N N 487 VAL CG2 C N N 488 VAL OXT O N N 489 VAL H H N N 490 VAL H2 H N N 491 VAL HA H N N 492 VAL HB H N N 493 VAL HG11 H N N 494 VAL HG12 H N N 495 VAL HG13 H N N 496 VAL HG21 H N N 497 VAL HG22 H N N 498 VAL HG23 H N N 499 VAL HXT H N N 500 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLU N CA sing N N 185 GLU N H sing N N 186 GLU N H2 sing N N 187 GLU CA C sing N N 188 GLU CA CB sing N N 189 GLU CA HA sing N N 190 GLU C O doub N N 191 GLU C OXT sing N N 192 GLU CB CG sing N N 193 GLU CB HB2 sing N N 194 GLU CB HB3 sing N N 195 GLU CG CD sing N N 196 GLU CG HG2 sing N N 197 GLU CG HG3 sing N N 198 GLU CD OE1 doub N N 199 GLU CD OE2 sing N N 200 GLU OE2 HE2 sing N N 201 GLU OXT HXT sing N N 202 GLY N CA sing N N 203 GLY N H sing N N 204 GLY N H2 sing N N 205 GLY CA C sing N N 206 GLY CA HA2 sing N N 207 GLY CA HA3 sing N N 208 GLY C O doub N N 209 GLY C OXT sing N N 210 GLY OXT HXT sing N N 211 HIS N CA sing N N 212 HIS N H sing N N 213 HIS N H2 sing N N 214 HIS CA C sing N N 215 HIS CA CB sing N N 216 HIS CA HA sing N N 217 HIS C O doub N N 218 HIS C OXT sing N N 219 HIS CB CG sing N N 220 HIS CB HB2 sing N N 221 HIS CB HB3 sing N N 222 HIS CG ND1 sing Y N 223 HIS CG CD2 doub Y N 224 HIS ND1 CE1 doub Y N 225 HIS ND1 HD1 sing N N 226 HIS CD2 NE2 sing Y N 227 HIS CD2 HD2 sing N N 228 HIS CE1 NE2 sing Y N 229 HIS CE1 HE1 sing N N 230 HIS NE2 HE2 sing N N 231 HIS OXT HXT sing N N 232 HOH O H1 sing N N 233 HOH O H2 sing N N 234 ILE N CA sing N N 235 ILE N H sing N N 236 ILE N H2 sing N N 237 ILE CA C sing N N 238 ILE CA CB sing N N 239 ILE CA HA sing N N 240 ILE C O doub N N 241 ILE C OXT sing N N 242 ILE CB CG1 sing N N 243 ILE CB CG2 sing N N 244 ILE CB HB sing N N 245 ILE CG1 CD1 sing N N 246 ILE CG1 HG12 sing N N 247 ILE CG1 HG13 sing N N 248 ILE CG2 HG21 sing N N 249 ILE CG2 HG22 sing N N 250 ILE CG2 HG23 sing N N 251 ILE CD1 HD11 sing N N 252 ILE CD1 HD12 sing N N 253 ILE CD1 HD13 sing N N 254 ILE OXT HXT sing N N 255 LEU N CA sing N N 256 LEU N H sing N N 257 LEU N H2 sing N N 258 LEU CA C sing N N 259 LEU CA CB sing N N 260 LEU CA HA sing N N 261 LEU C O doub N N 262 LEU C OXT sing N N 263 LEU CB CG sing N N 264 LEU CB HB2 sing N N 265 LEU CB HB3 sing N N 266 LEU CG CD1 sing N N 267 LEU CG CD2 sing N N 268 LEU CG HG sing N N 269 LEU CD1 HD11 sing N N 270 LEU CD1 HD12 sing N N 271 LEU CD1 HD13 sing N N 272 LEU CD2 HD21 sing N N 273 LEU CD2 HD22 sing N N 274 LEU CD2 HD23 sing N N 275 LEU OXT HXT sing N N 276 LYS N CA sing N N 277 LYS N H sing N N 278 LYS N H2 sing N N 279 LYS CA C sing N N 280 LYS CA CB sing N N 281 LYS CA HA sing N N 282 LYS C O doub N N 283 LYS C OXT sing N N 284 LYS CB CG sing N N 285 LYS CB HB2 sing N N 286 LYS CB HB3 sing N N 287 LYS CG CD sing N N 288 LYS CG HG2 sing N N 289 LYS CG HG3 sing N N 290 LYS CD CE sing N N 291 LYS CD HD2 sing N N 292 LYS CD HD3 sing N N 293 LYS CE NZ sing N N 294 LYS CE HE2 sing N N 295 LYS CE HE3 sing N N 296 LYS NZ HZ1 sing N N 297 LYS NZ HZ2 sing N N 298 LYS NZ HZ3 sing N N 299 LYS OXT HXT sing N N 300 MET N CA sing N N 301 MET N H sing N N 302 MET N H2 sing N N 303 MET CA C sing N N 304 MET CA CB sing N N 305 MET CA HA sing N N 306 MET C O doub N N 307 MET C OXT sing N N 308 MET CB CG sing N N 309 MET CB HB2 sing N N 310 MET CB HB3 sing N N 311 MET CG SD sing N N 312 MET CG HG2 sing N N 313 MET CG HG3 sing N N 314 MET SD CE sing N N 315 MET CE HE1 sing N N 316 MET CE HE2 sing N N 317 MET CE HE3 sing N N 318 MET OXT HXT sing N N 319 PHE N CA sing N N 320 PHE N H sing N N 321 PHE N H2 sing N N 322 PHE CA C sing N N 323 PHE CA CB sing N N 324 PHE CA HA sing N N 325 PHE C O doub N N 326 PHE C OXT sing N N 327 PHE CB CG sing N N 328 PHE CB HB2 sing N N 329 PHE CB HB3 sing N N 330 PHE CG CD1 doub Y N 331 PHE CG CD2 sing Y N 332 PHE CD1 CE1 sing Y N 333 PHE CD1 HD1 sing N N 334 PHE CD2 CE2 doub Y N 335 PHE CD2 HD2 sing N N 336 PHE CE1 CZ doub Y N 337 PHE CE1 HE1 sing N N 338 PHE CE2 CZ sing Y N 339 PHE CE2 HE2 sing N N 340 PHE CZ HZ sing N N 341 PHE OXT HXT sing N N 342 PRO N CA sing N N 343 PRO N CD sing N N 344 PRO N H sing N N 345 PRO CA C sing N N 346 PRO CA CB sing N N 347 PRO CA HA sing N N 348 PRO C O doub N N 349 PRO C OXT sing N N 350 PRO CB CG sing N N 351 PRO CB HB2 sing N N 352 PRO CB HB3 sing N N 353 PRO CG CD sing N N 354 PRO CG HG2 sing N N 355 PRO CG HG3 sing N N 356 PRO CD HD2 sing N N 357 PRO CD HD3 sing N N 358 PRO OXT HXT sing N N 359 SER N CA sing N N 360 SER N H sing N N 361 SER N H2 sing N N 362 SER CA C sing N N 363 SER CA CB sing N N 364 SER CA HA sing N N 365 SER C O doub N N 366 SER C OXT sing N N 367 SER CB OG sing N N 368 SER CB HB2 sing N N 369 SER CB HB3 sing N N 370 SER OG HG sing N N 371 SER OXT HXT sing N N 372 THR N CA sing N N 373 THR N H sing N N 374 THR N H2 sing N N 375 THR CA C sing N N 376 THR CA CB sing N N 377 THR CA HA sing N N 378 THR C O doub N N 379 THR C OXT sing N N 380 THR CB OG1 sing N N 381 THR CB CG2 sing N N 382 THR CB HB sing N N 383 THR OG1 HG1 sing N N 384 THR CG2 HG21 sing N N 385 THR CG2 HG22 sing N N 386 THR CG2 HG23 sing N N 387 THR OXT HXT sing N N 388 TRP N CA sing N N 389 TRP N H sing N N 390 TRP N H2 sing N N 391 TRP CA C sing N N 392 TRP CA CB sing N N 393 TRP CA HA sing N N 394 TRP C O doub N N 395 TRP C OXT sing N N 396 TRP CB CG sing N N 397 TRP CB HB2 sing N N 398 TRP CB HB3 sing N N 399 TRP CG CD1 doub Y N 400 TRP CG CD2 sing Y N 401 TRP CD1 NE1 sing Y N 402 TRP CD1 HD1 sing N N 403 TRP CD2 CE2 doub Y N 404 TRP CD2 CE3 sing Y N 405 TRP NE1 CE2 sing Y N 406 TRP NE1 HE1 sing N N 407 TRP CE2 CZ2 sing Y N 408 TRP CE3 CZ3 doub Y N 409 TRP CE3 HE3 sing N N 410 TRP CZ2 CH2 doub Y N 411 TRP CZ2 HZ2 sing N N 412 TRP CZ3 CH2 sing Y N 413 TRP CZ3 HZ3 sing N N 414 TRP CH2 HH2 sing N N 415 TRP OXT HXT sing N N 416 TYR N CA sing N N 417 TYR N H sing N N 418 TYR N H2 sing N N 419 TYR CA C sing N N 420 TYR CA CB sing N N 421 TYR CA HA sing N N 422 TYR C O doub N N 423 TYR C OXT sing N N 424 TYR CB CG sing N N 425 TYR CB HB2 sing N N 426 TYR CB HB3 sing N N 427 TYR CG CD1 doub Y N 428 TYR CG CD2 sing Y N 429 TYR CD1 CE1 sing Y N 430 TYR CD1 HD1 sing N N 431 TYR CD2 CE2 doub Y N 432 TYR CD2 HD2 sing N N 433 TYR CE1 CZ doub Y N 434 TYR CE1 HE1 sing N N 435 TYR CE2 CZ sing Y N 436 TYR CE2 HE2 sing N N 437 TYR CZ OH sing N N 438 TYR OH HH sing N N 439 TYR OXT HXT sing N N 440 U OP3 P sing N N 441 U OP3 HOP3 sing N N 442 U P OP1 doub N N 443 U P OP2 sing N N 444 U P "O5'" sing N N 445 U OP2 HOP2 sing N N 446 U "O5'" "C5'" sing N N 447 U "C5'" "C4'" sing N N 448 U "C5'" "H5'" sing N N 449 U "C5'" "H5''" sing N N 450 U "C4'" "O4'" sing N N 451 U "C4'" "C3'" sing N N 452 U "C4'" "H4'" sing N N 453 U "O4'" "C1'" sing N N 454 U "C3'" "O3'" sing N N 455 U "C3'" "C2'" sing N N 456 U "C3'" "H3'" sing N N 457 U "O3'" "HO3'" sing N N 458 U "C2'" "O2'" sing N N 459 U "C2'" "C1'" sing N N 460 U "C2'" "H2'" sing N N 461 U "O2'" "HO2'" sing N N 462 U "C1'" N1 sing N N 463 U "C1'" "H1'" sing N N 464 U N1 C2 sing N N 465 U N1 C6 sing N N 466 U C2 O2 doub N N 467 U C2 N3 sing N N 468 U N3 C4 sing N N 469 U N3 H3 sing N N 470 U C4 O4 doub N N 471 U C4 C5 sing N N 472 U C5 C6 doub N N 473 U C5 H5 sing N N 474 U C6 H6 sing N N 475 VAL N CA sing N N 476 VAL N H sing N N 477 VAL N H2 sing N N 478 VAL CA C sing N N 479 VAL CA CB sing N N 480 VAL CA HA sing N N 481 VAL C O doub N N 482 VAL C OXT sing N N 483 VAL CB CG1 sing N N 484 VAL CB CG2 sing N N 485 VAL CB HB sing N N 486 VAL CG1 HG11 sing N N 487 VAL CG1 HG12 sing N N 488 VAL CG1 HG13 sing N N 489 VAL CG2 HG21 sing N N 490 VAL CG2 HG22 sing N N 491 VAL CG2 HG23 sing N N 492 VAL OXT HXT sing N N 493 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2F8K 'a-form double helix' 2F8K 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 2 1_555 A U 16 1_555 0.128 0.020 0.122 -5.818 -3.223 7.448 1 B_A1:U15_B B 1 ? B 15 ? 20 1 1 A A 3 1_555 A U 15 1_555 0.327 -0.171 0.151 2.552 -12.938 4.587 2 B_A2:U14_B B 2 ? B 14 ? 20 1 1 A U 4 1_555 A A 14 1_555 -0.171 -0.126 -0.225 7.808 -19.038 6.475 3 B_U3:A13_B B 3 ? B 13 ? 20 1 1 A C 5 1_555 A G 13 1_555 0.211 -0.238 -0.184 6.507 -15.313 2.132 4 B_C4:G12_B B 4 ? B 12 ? 19 1 1 A U 6 1_555 A A 12 1_555 -0.033 -0.100 -0.052 2.026 -6.852 -0.775 5 B_U5:A11_B B 5 ? B 11 ? 20 1 1 A U 7 1_555 A A 10 1_555 -0.086 -0.177 -0.391 15.923 11.217 2.903 6 B_U6:A9_B B 6 ? B 9 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 2 1_555 A U 16 1_555 A A 3 1_555 A U 15 1_555 -0.342 -1.275 2.984 -0.423 7.209 32.439 -3.283 0.537 2.651 12.709 0.746 33.212 1 BB_A1A2:U14U15_BB B 1 ? B 15 ? B 2 ? B 14 ? 1 A A 3 1_555 A U 15 1_555 A U 4 1_555 A A 14 1_555 -0.181 -1.280 3.092 2.311 7.099 27.639 -4.032 0.835 2.663 14.527 -4.729 28.610 2 BB_A2U3:A13U14_BB B 2 ? B 14 ? B 3 ? B 13 ? 1 A U 4 1_555 A A 14 1_555 A C 5 1_555 A G 13 1_555 -0.203 -1.510 3.318 -2.246 7.086 31.783 -3.880 -0.016 2.929 12.722 4.033 32.619 3 BB_U3C4:G12A13_BB B 3 ? B 13 ? B 4 ? B 12 ? 1 A C 5 1_555 A G 13 1_555 A U 6 1_555 A A 12 1_555 -0.549 -1.612 3.414 -2.315 10.756 31.650 -4.526 0.581 2.766 19.016 4.093 33.461 4 BB_C4U5:A11G12_BB B 4 ? B 12 ? B 5 ? B 11 ? 1 A U 6 1_555 A A 12 1_555 A U 7 1_555 A A 10 1_555 -0.535 -1.186 3.079 3.523 9.977 16.093 -7.699 3.065 1.871 31.573 -11.149 19.241 5 BB_U5U6:A9A11_BB B 5 ? B 11 ? B 6 ? B 9 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2D3D _pdbx_initial_refinement_model.details 'PDB Entry: 2D3D' #