HEADER TRANSFERASE 02-DEC-05 2F8L TITLE CRYSTAL STRUCTURE OF A PUTATIVE CLASS I S-ADENOSYLMETHIONINE-DEPENDENT TITLE 2 METHYLTRANSFERASE (LMO1582) FROM LISTERIA MONOCYTOGENES AT 2.20 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN LMO1582; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 STRAIN: LI2; SOURCE 5 GENE: 16411011; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2F8L 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 2F8L 1 REMARK REVDAT 5 13-JUL-11 2F8L 1 VERSN REVDAT 4 23-MAR-11 2F8L 1 HEADER TITLE KEYWDS REVDAT 3 24-FEB-09 2F8L 1 VERSN REVDAT 2 21-FEB-06 2F8L 1 JRNL TITLE REVDAT 1 17-JAN-06 2F8L 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF (16411011) FROM LISTERIA MONOCYTOGENES JRNL TITL 2 LI2 AT 2.20 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1463 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2652 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1760 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3588 ; 1.585 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4356 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.673 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;38.532 ;26.293 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;15.488 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.051 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2876 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 464 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 535 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1823 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1279 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1356 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.040 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1685 ; 2.012 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 659 ; 0.527 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2633 ; 3.037 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1089 ; 5.355 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 955 ; 6.946 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 54.9955 20.8411 60.3799 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.4869 REMARK 3 T33: 0.1782 T12: -0.0779 REMARK 3 T13: -0.3423 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 6.1518 L22: 2.8822 REMARK 3 L33: 5.0270 L12: 1.6250 REMARK 3 L13: 0.1743 L23: -1.3285 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -1.4414 S13: 0.0310 REMARK 3 S21: 1.0116 S22: -0.2292 S23: -0.8230 REMARK 3 S31: -0.5429 S32: 0.8231 S33: 0.2607 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9197 18.2344 37.0058 REMARK 3 T TENSOR REMARK 3 T11: -0.2008 T22: -0.2012 REMARK 3 T33: -0.2073 T12: -0.0355 REMARK 3 T13: 0.0044 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.5950 L22: 3.2032 REMARK 3 L33: 2.0716 L12: -0.9590 REMARK 3 L13: 0.0776 L23: 0.1437 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: -0.0601 S13: 0.0418 REMARK 3 S21: 0.1291 S22: 0.0853 S23: -0.2219 REMARK 3 S31: -0.0785 S32: 0.1303 S33: -0.0530 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797, 0.9796, 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 23.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : 0.58200 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M (NH4)2SO4, 0.1M TRIS, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.79750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 49.79750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.54200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.79750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.27100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.79750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.81300 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.79750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.79750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.54200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 49.79750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 87.81300 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 49.79750 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.27100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS REMARK 300 A BIOLOGICALLY SIGNIFICANT OLIGIMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 LEU A 50 REMARK 465 SER A 51 REMARK 465 SER A 52 REMARK 465 GLU A 53 REMARK 465 GLU A 281 REMARK 465 SER A 330 REMARK 465 LYS A 331 REMARK 465 GLN A 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 LYS A 256 CD CE NZ REMARK 470 LYS A 301 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 439 O HOH A 508 2.08 REMARK 500 O HOH A 409 O HOH A 548 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 -59.12 73.00 REMARK 500 GLN A 46 56.08 -112.38 REMARK 500 GLN A 115 -108.59 62.07 REMARK 500 ALA A 126 63.17 -152.58 REMARK 500 LYS A 279 -160.01 -60.02 REMARK 500 ARG A 284 121.28 -38.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 2 ASN A 3 -149.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 359352 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE STRAIN CLONED DIFFERS FROM THE SEQUENCED STRAIN IN THE REMARK 999 DATABASE. DNA SEQUENCING CONFIRMED THE FOLLOWING STRAIN REMARK 999 VARIATIONS - E60A, I120V, R291E, AND N296D. THE ELECTRON REMARK 999 DENSITY SUPPORTS THESE ASSIGNMENTS. DBREF 2F8L A 1 332 GB 16803622 NP_465107 1 332 SEQADV 2F8L MSE A -11 GB 16803622 EXPRESSION TAG SEQADV 2F8L GLY A -10 GB 16803622 EXPRESSION TAG SEQADV 2F8L SER A -9 GB 16803622 EXPRESSION TAG SEQADV 2F8L ASP A -8 GB 16803622 EXPRESSION TAG SEQADV 2F8L LYS A -7 GB 16803622 EXPRESSION TAG SEQADV 2F8L ILE A -6 GB 16803622 EXPRESSION TAG SEQADV 2F8L HIS A -5 GB 16803622 EXPRESSION TAG SEQADV 2F8L HIS A -4 GB 16803622 EXPRESSION TAG SEQADV 2F8L HIS A -3 GB 16803622 EXPRESSION TAG SEQADV 2F8L HIS A -2 GB 16803622 EXPRESSION TAG SEQADV 2F8L HIS A -1 GB 16803622 EXPRESSION TAG SEQADV 2F8L HIS A 0 GB 16803622 EXPRESSION TAG SEQADV 2F8L MSE A 1 GB 16803622 MET 1 MODIFIED RESIDUE SEQADV 2F8L ALA A 60 GB 16803622 GLU 60 SEE REMARK 999 SEQADV 2F8L MSE A 87 GB 16803622 MET 87 MODIFIED RESIDUE SEQADV 2F8L MSE A 97 GB 16803622 MET 97 MODIFIED RESIDUE SEQADV 2F8L VAL A 120 GB 16803622 ILE 120 SEE REMARK 999 SEQADV 2F8L MSE A 174 GB 16803622 MET 174 MODIFIED RESIDUE SEQADV 2F8L MSE A 231 GB 16803622 MET 231 MODIFIED RESIDUE SEQADV 2F8L MSE A 248 GB 16803622 MET 248 MODIFIED RESIDUE SEQADV 2F8L GLU A 291 GB 16803622 ARG 291 SEE REMARK 999 SEQADV 2F8L ASP A 296 GB 16803622 ASN 296 SEE REMARK 999 SEQRES 1 A 344 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 344 ALA ASN GLU ALA THR GLN GLU LEU PHE GLN VAL LEU ASP SEQRES 3 A 344 ASN THR ALA ILE ILE LEU GLN ASN GLU LEU GLU ILE SER SEQRES 4 A 344 TYR LEU GLU ALA VAL TYR GLU THR GLY GLU ASN LEU PHE SEQRES 5 A 344 GLN LYS GLU VAL LEU GLN LYS GLU GLU LEU SER SER GLU SEQRES 6 A 344 LYS GLN LEU LYS LEU GLN ALA SER TYR GLU SER ILE GLU SEQRES 7 A 344 LEU GLU ASN PHE SER ASN GLU GLU ILE ARG LYS GLY LEU SEQRES 8 A 344 GLN LEU ALA LEU LEU LYS GLY MSE LYS HIS GLY ILE GLN SEQRES 9 A 344 VAL ASN HIS GLN MSE THR PRO ASP SER ILE GLY PHE ILE SEQRES 10 A 344 VAL ALA TYR LEU LEU GLU LYS VAL ILE GLN LYS LYS LYS SEQRES 11 A 344 ASN VAL SER ILE LEU ASP PRO ALA CYS GLY THR ALA ASN SEQRES 12 A 344 LEU LEU THR THR VAL ILE ASN GLN LEU GLU LEU LYS GLY SEQRES 13 A 344 ASP VAL ASP VAL HIS ALA SER GLY VAL ASP VAL ASP ASP SEQRES 14 A 344 LEU LEU ILE SER LEU ALA LEU VAL GLY ALA ASP LEU GLN SEQRES 15 A 344 ARG GLN LYS MSE THR LEU LEU HIS GLN ASP GLY LEU ALA SEQRES 16 A 344 ASN LEU LEU VAL ASP PRO VAL ASP VAL VAL ILE SER ASP SEQRES 17 A 344 LEU PRO VAL GLY TYR TYR PRO ASP ASP GLU ASN ALA LYS SEQRES 18 A 344 THR PHE GLU LEU CYS ARG GLU GLU GLY HIS SER PHE ALA SEQRES 19 A 344 HIS PHE LEU PHE ILE GLU GLN GLY MSE ARG TYR THR LYS SEQRES 20 A 344 PRO GLY GLY TYR LEU PHE PHE LEU VAL PRO ASP ALA MSE SEQRES 21 A 344 PHE GLY THR SER ASP PHE ALA LYS VAL ASP LYS PHE ILE SEQRES 22 A 344 LYS LYS ASN GLY HIS ILE GLU GLY ILE ILE LYS LEU PRO SEQRES 23 A 344 GLU THR LEU PHE LYS SER GLU GLN ALA ARG LYS SER ILE SEQRES 24 A 344 LEU ILE LEU GLU LYS ALA ASP VAL ASP VAL LYS PRO PRO SEQRES 25 A 344 LYS GLU VAL LEU LEU ALA ASN LEU SER SER LEU THR ASP SEQRES 26 A 344 PRO SER VAL THR ALA PRO ILE LEU ALA GLU ILE GLU ASN SEQRES 27 A 344 TRP PHE LYS SER LYS GLN MODRES 2F8L MSE A 87 MET SELENOMETHIONINE MODRES 2F8L MSE A 97 MET SELENOMETHIONINE MODRES 2F8L MSE A 174 MET SELENOMETHIONINE MODRES 2F8L MSE A 231 MET SELENOMETHIONINE MODRES 2F8L MSE A 248 MET SELENOMETHIONINE HET MSE A 87 8 HET MSE A 97 16 HET MSE A 174 8 HET MSE A 231 12 HET MSE A 248 8 HET CL A 333 1 HET SO4 A 334 5 HET SAM A 400 27 HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 SO4 O4 S 2- FORMUL 4 SAM C15 H22 N6 O5 S FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *154(H2 O) HELIX 1 1 ASN A 3 LEU A 24 1 22 HELIX 2 2 SER A 27 LYS A 42 1 16 HELIX 3 3 LYS A 54 SER A 64 1 11 HELIX 4 4 GLU A 66 PHE A 70 5 5 HELIX 5 5 SER A 71 MSE A 87 1 17 HELIX 6 6 GLN A 92 GLN A 96 5 5 HELIX 7 7 PRO A 99 GLN A 115 1 17 HELIX 8 8 ALA A 130 LEU A 142 1 13 HELIX 9 9 ASP A 156 ARG A 171 1 16 HELIX 10 10 ASP A 204 LYS A 209 1 6 HELIX 11 11 ALA A 222 TYR A 233 1 12 HELIX 12 12 ALA A 247 SER A 252 5 6 HELIX 13 13 ASP A 253 ASN A 264 1 12 HELIX 14 14 PRO A 274 PHE A 278 5 5 HELIX 15 15 ASP A 313 PHE A 328 1 16 SHEET 1 A 8 THR A 175 HIS A 178 0 SHEET 2 A 8 ASP A 147 ASP A 154 1 N GLY A 152 O LEU A 177 SHEET 3 A 8 ASN A 119 ASP A 124 1 N VAL A 120 O HIS A 149 SHEET 4 A 8 VAL A 190 ASP A 196 1 O VAL A 192 N SER A 121 SHEET 5 A 8 THR A 234 PRO A 245 1 O LEU A 243 N SER A 195 SHEET 6 A 8 LYS A 285 LYS A 292 -1 O LEU A 288 N PHE A 242 SHEET 7 A 8 GLY A 265 LYS A 272 -1 N GLU A 268 O ILE A 289 SHEET 8 A 8 LEU A 304 ASN A 307 1 O LEU A 304 N ILE A 270 SHEET 1 B 2 TYR A 201 TYR A 202 0 SHEET 2 B 2 SER A 220 PHE A 221 -1 O SER A 220 N TYR A 202 LINK C GLY A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N LYS A 88 1555 1555 1.32 LINK C GLN A 96 N AMSE A 97 1555 1555 1.34 LINK C GLN A 96 N BMSE A 97 1555 1555 1.34 LINK C AMSE A 97 N THR A 98 1555 1555 1.33 LINK C BMSE A 97 N THR A 98 1555 1555 1.33 LINK C LYS A 173 N MSE A 174 1555 1555 1.32 LINK C MSE A 174 N THR A 175 1555 1555 1.32 LINK C GLY A 230 N MSE A 231 1555 1555 1.34 LINK C MSE A 231 N BARG A 232 1555 1555 1.34 LINK C MSE A 231 N AARG A 232 1555 1555 1.33 LINK C ALA A 247 N MSE A 248 1555 1555 1.32 LINK C MSE A 248 N PHE A 249 1555 1555 1.35 SITE 1 AC1 1 ARG A 171 SITE 1 AC2 3 LYS A 117 LYS A 118 ASN A 119 SITE 1 AC3 23 ASN A 94 HIS A 95 GLN A 96 MSE A 97 SITE 2 AC3 23 THR A 98 PRO A 125 ALA A 126 CYS A 127 SITE 3 AC3 23 GLY A 128 THR A 129 ASN A 131 LEU A 132 SITE 4 AC3 23 ASP A 154 VAL A 155 ASP A 156 LEU A 159 SITE 5 AC3 23 ASP A 180 GLY A 181 ASP A 196 PRO A 198 SITE 6 AC3 23 PHE A 226 HOH A 414 HOH A 452 SITE 1 AC4 9 TYR A 239 GLU A 268 LYS A 298 PRO A 299 SITE 2 AC4 9 PRO A 300 TRP A 327 PHE A 328 GOL A 404 SITE 3 AC4 9 HOH A 497 SITE 1 AC5 5 TYR A 201 GLY A 218 HIS A 219 LYS A 262 SITE 2 AC5 5 GLY A 265 SITE 1 AC6 3 ARG A 215 GLU A 216 GLU A 217 SITE 1 AC7 5 PRO A 300 LYS A 301 GLU A 302 TRP A 327 SITE 2 AC7 5 GOL A 401 SITE 1 AC8 5 THR A 276 SER A 310 LEU A 311 THR A 312 SITE 2 AC8 5 HOH A 495 CRYST1 99.595 99.595 117.084 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008541 0.00000