HEADER STRUCTURAL GENOMICS, HYDROLASE 05-DEC-05 2F96 TITLE 2.1 A CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA RNASE T TITLE 2 (RIBONUCLEASE T) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE T; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EXORIBONUCLEASE T, RNASE T; COMPND 5 EC: 3.1.13.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 ATCC: 15692; SOURCE 6 GENE: RNT, PA3528; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD MAGIC (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS RNASE, RNT, RNASE T, RIBONUCLEASE T, TRNA HYDROLASE, SAD, PSI, MCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHENG,M.CHRUSZCZ,M.CYMBOROWSKI,Y.WANG,E.GORODICHTCHENSKAIA, AUTHOR 2 T.SKARINA,J.GUTHRIE,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,W.MINOR, AUTHOR 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 8 13-APR-22 2F96 1 AUTHOR JRNL REMARK LINK REVDAT 7 18-OCT-17 2F96 1 REMARK REVDAT 6 05-OCT-11 2F96 1 AUTHOR REVDAT 5 13-JUL-11 2F96 1 VERSN REVDAT 4 24-FEB-09 2F96 1 VERSN REVDAT 3 24-APR-07 2F96 1 JRNL REVDAT 2 21-FEB-06 2F96 1 AUTHOR REVDAT 1 14-FEB-06 2F96 0 JRNL AUTH Y.ZUO,H.ZHENG,Y.WANG,M.CHRUSZCZ,M.CYMBOROWSKI,T.SKARINA, JRNL AUTH 2 A.SAVCHENKO,A.MALHOTRA,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF RNASE T, AN EXORIBONUCLEASE INVOLVED IN JRNL TITL 2 TRNA MATURATION AND END TURNOVER. JRNL REF STRUCTURE V. 15 417 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17437714 JRNL DOI 10.1016/J.STR.2007.02.004 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3173 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2892 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4285 ; 1.345 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6668 ; 0.773 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 5.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;30.576 ;22.535 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;14.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;10.225 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3599 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 722 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 580 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2666 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1552 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1865 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.081 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 2 ; 0.069 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2146 ; 2.433 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 829 ; 0.607 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3161 ; 3.102 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 5.731 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1124 ; 7.618 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 19 A 220 6 REMARK 3 1 B 19 B 220 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2980 ; 0.52 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2980 ; 0.88 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 19 A 220 4 REMARK 3 1 B 19 B 220 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 2980 ; 0.52 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 2980 ; 0.88 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 220 REMARK 3 RESIDUE RANGE : B 19 B 220 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2890 32.1820 42.8840 REMARK 3 T TENSOR REMARK 3 T11: -0.1787 T22: -0.1152 REMARK 3 T33: 0.1512 T12: -0.0071 REMARK 3 T13: -0.0076 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5065 L22: 0.3493 REMARK 3 L33: 1.3162 L12: -0.0595 REMARK 3 L13: -0.0011 L23: 0.0691 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -0.0014 S13: -0.0022 REMARK 3 S21: -0.0240 S22: 0.0283 S23: -0.0619 REMARK 3 S31: 0.0125 S32: 0.0800 S33: -0.0403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : SI 111 CHANNEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27229 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.567 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, SOLVE RESOLVE, HKL-3000, DM, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 25% W/V, MG CHLORIDE 0.2 M REMARK 280 BIS-TRIS 0.3M NDSB 256, , PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.31800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 PHE A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 GLU A 9 REMARK 465 PHE A 10 REMARK 465 ASP A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 SER A 16 REMARK 465 GLY A 17 REMARK 465 PRO A 18 REMARK 465 ASP A 221 REMARK 465 ASP A 222 REMARK 465 ASP A 223 REMARK 465 ASP A 224 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 PHE B 6 REMARK 465 ASP B 7 REMARK 465 ASP B 8 REMARK 465 GLU B 9 REMARK 465 PHE B 10 REMARK 465 ASP B 11 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 LEU B 14 REMARK 465 PRO B 15 REMARK 465 SER B 16 REMARK 465 GLY B 17 REMARK 465 PRO B 18 REMARK 465 ASP B 221 REMARK 465 ASP B 222 REMARK 465 ASP B 223 REMARK 465 ASP B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 186 CB CG CD OE1 OE2 REMARK 470 ASP A 188 CG OD1 OD2 REMARK 470 ASN A 189 CG OD1 ND2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 ARG B 19 N CB CG CD NE CZ NH1 REMARK 470 ARG B 19 NH2 REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 ASP B 188 CG OD1 OD2 REMARK 470 ASN B 189 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 67 -86.77 -99.23 REMARK 500 PHE A 158 -33.83 -137.74 REMARK 500 GLU A 191 -27.27 90.38 REMARK 500 GLU B 67 -95.20 -112.52 REMARK 500 ASN B 189 77.03 -67.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD1 REMARK 620 2 HOH A2048 O 74.4 REMARK 620 3 HOH A2098 O 81.3 80.4 REMARK 620 4 HOH A2099 O 83.6 81.7 159.1 REMARK 620 5 HOH A2100 O 157.2 84.4 87.3 101.6 REMARK 620 6 HOH A2103 O 91.6 165.9 99.0 95.8 109.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 35 OD1 REMARK 620 2 HOH B1084 O 88.8 REMARK 620 3 HOH B1095 O 173.8 89.8 REMARK 620 4 HOH B1109 O 84.5 99.1 101.8 REMARK 620 5 HOH B1119 O 89.3 172.3 91.3 88.1 REMARK 620 6 HOH B1120 O 86.0 78.9 87.8 170.3 93.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5754 RELATED DB: TARGETDB DBREF 2F96 A 1 224 UNP Q9HY82 RNT_PSEAE 1 224 DBREF 2F96 B 1 224 UNP Q9HY82 RNT_PSEAE 1 224 SEQRES 1 A 224 MSE SER GLU ASP ASN PHE ASP ASP GLU PHE ASP GLY SER SEQRES 2 A 224 LEU PRO SER GLY PRO ARG HIS PRO MSE ALA ARG ARG PHE SEQRES 3 A 224 ARG GLY TYR LEU PRO VAL VAL VAL ASP VAL GLU THR GLY SEQRES 4 A 224 GLY PHE ASN SER ALA THR ASP ALA LEU LEU GLU ILE ALA SEQRES 5 A 224 ALA THR THR VAL GLY MSE ASP GLU LYS GLY PHE LEU PHE SEQRES 6 A 224 PRO GLU HIS THR TYR PHE PHE ARG ILE GLU PRO PHE GLU SEQRES 7 A 224 GLY ALA ASN ILE GLU PRO ALA ALA LEU GLU PHE THR GLY SEQRES 8 A 224 ILE LYS LEU ASP HIS PRO LEU ARG MSE ALA VAL GLN GLU SEQRES 9 A 224 GLU ALA ALA LEU THR GLU ILE PHE ARG GLY ILE ARG LYS SEQRES 10 A 224 ALA LEU LYS ALA ASN GLY CYS LYS ARG ALA ILE LEU VAL SEQRES 11 A 224 GLY HIS ASN SER SER PHE ASP LEU GLY PHE LEU ASN ALA SEQRES 12 A 224 ALA VAL ALA ARG THR GLY ILE LYS ARG ASN PRO PHE HIS SEQRES 13 A 224 PRO PHE SER SER PHE ASP THR ALA THR LEU ALA GLY LEU SEQRES 14 A 224 ALA TYR GLY GLN THR VAL LEU ALA LYS ALA CYS GLN ALA SEQRES 15 A 224 ALA GLY MSE GLU PHE ASP ASN ARG GLU ALA HIS SER ALA SEQRES 16 A 224 ARG TYR ASP THR GLU LYS THR ALA GLU LEU PHE CYS GLY SEQRES 17 A 224 ILE VAL ASN ARG TRP LYS GLU MSE GLY GLY TRP MSE ASP SEQRES 18 A 224 ASP ASP ASP SEQRES 1 B 224 MSE SER GLU ASP ASN PHE ASP ASP GLU PHE ASP GLY SER SEQRES 2 B 224 LEU PRO SER GLY PRO ARG HIS PRO MSE ALA ARG ARG PHE SEQRES 3 B 224 ARG GLY TYR LEU PRO VAL VAL VAL ASP VAL GLU THR GLY SEQRES 4 B 224 GLY PHE ASN SER ALA THR ASP ALA LEU LEU GLU ILE ALA SEQRES 5 B 224 ALA THR THR VAL GLY MSE ASP GLU LYS GLY PHE LEU PHE SEQRES 6 B 224 PRO GLU HIS THR TYR PHE PHE ARG ILE GLU PRO PHE GLU SEQRES 7 B 224 GLY ALA ASN ILE GLU PRO ALA ALA LEU GLU PHE THR GLY SEQRES 8 B 224 ILE LYS LEU ASP HIS PRO LEU ARG MSE ALA VAL GLN GLU SEQRES 9 B 224 GLU ALA ALA LEU THR GLU ILE PHE ARG GLY ILE ARG LYS SEQRES 10 B 224 ALA LEU LYS ALA ASN GLY CYS LYS ARG ALA ILE LEU VAL SEQRES 11 B 224 GLY HIS ASN SER SER PHE ASP LEU GLY PHE LEU ASN ALA SEQRES 12 B 224 ALA VAL ALA ARG THR GLY ILE LYS ARG ASN PRO PHE HIS SEQRES 13 B 224 PRO PHE SER SER PHE ASP THR ALA THR LEU ALA GLY LEU SEQRES 14 B 224 ALA TYR GLY GLN THR VAL LEU ALA LYS ALA CYS GLN ALA SEQRES 15 B 224 ALA GLY MSE GLU PHE ASP ASN ARG GLU ALA HIS SER ALA SEQRES 16 B 224 ARG TYR ASP THR GLU LYS THR ALA GLU LEU PHE CYS GLY SEQRES 17 B 224 ILE VAL ASN ARG TRP LYS GLU MSE GLY GLY TRP MSE ASP SEQRES 18 B 224 ASP ASP ASP MODRES 2F96 MSE A 22 MET SELENOMETHIONINE MODRES 2F96 MSE A 58 MET SELENOMETHIONINE MODRES 2F96 MSE A 100 MET SELENOMETHIONINE MODRES 2F96 MSE A 185 MET SELENOMETHIONINE MODRES 2F96 MSE A 216 MET SELENOMETHIONINE MODRES 2F96 MSE A 220 MET SELENOMETHIONINE MODRES 2F96 MSE B 22 MET SELENOMETHIONINE MODRES 2F96 MSE B 58 MET SELENOMETHIONINE MODRES 2F96 MSE B 100 MET SELENOMETHIONINE MODRES 2F96 MSE B 185 MET SELENOMETHIONINE MODRES 2F96 MSE B 216 MET SELENOMETHIONINE MODRES 2F96 MSE B 220 MET SELENOMETHIONINE HET MSE A 22 8 HET MSE A 58 8 HET MSE A 100 8 HET MSE A 185 8 HET MSE A 216 8 HET MSE A 220 8 HET MSE B 22 8 HET MSE B 58 8 HET MSE B 100 8 HET MSE B 185 8 HET MSE B 216 8 HET MSE B 220 8 HET MG A2001 1 HET MG B1001 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *230(H2 O) HELIX 1 1 PRO A 21 ARG A 25 1 5 HELIX 2 2 PRO A 84 THR A 90 1 7 HELIX 3 3 GLU A 104 ALA A 121 1 18 HELIX 4 4 SER A 134 THR A 148 1 15 HELIX 5 5 THR A 163 TYR A 171 1 9 HELIX 6 6 LEU A 176 ALA A 182 1 7 HELIX 7 7 ALA A 195 GLU A 215 1 21 HELIX 8 8 PRO B 21 ARG B 25 1 5 HELIX 9 9 PRO B 84 THR B 90 1 7 HELIX 10 10 GLU B 104 ASN B 122 1 19 HELIX 11 11 SER B 134 THR B 148 1 15 HELIX 12 12 THR B 163 TYR B 171 1 9 HELIX 13 13 LEU B 176 ALA B 182 1 7 HELIX 14 14 ALA B 195 GLU B 215 1 21 SHEET 1 A 5 SER A 160 ASP A 162 0 SHEET 2 A 5 ARG A 126 GLY A 131 1 N LEU A 129 O PHE A 161 SHEET 3 A 5 TYR A 29 THR A 38 1 N LEU A 30 O ARG A 126 SHEET 4 A 5 LEU A 48 THR A 55 -1 N THR A 54 O VAL A 33 SHEET 5 A 5 THR A 69 ARG A 73 -1 N PHE A 72 O ILE A 51 SHEET 1 B 2 VAL A 56 MSE A 58 0 SHEET 2 B 2 LEU A 64 PRO A 66 -1 N PHE A 65 O GLY A 57 SHEET 1 C 5 SER B 160 ASP B 162 0 SHEET 2 C 5 ARG B 126 GLY B 131 1 N LEU B 129 O PHE B 161 SHEET 3 C 5 TYR B 29 THR B 38 1 N LEU B 30 O ARG B 126 SHEET 4 C 5 LEU B 48 THR B 55 -1 N THR B 54 O VAL B 33 SHEET 5 C 5 THR B 69 ARG B 73 -1 N PHE B 72 O ILE B 51 SHEET 1 D 2 VAL B 56 MSE B 58 0 SHEET 2 D 2 LEU B 64 PRO B 66 -1 N PHE B 65 O GLY B 57 LINK C PRO A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N ALA A 23 1555 1555 1.33 LINK C GLY A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N ASP A 59 1555 1555 1.33 LINK C ARG A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N ALA A 101 1555 1555 1.33 LINK C GLY A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N GLU A 186 1555 1555 1.34 LINK C GLU A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N GLY A 217 1555 1555 1.33 LINK C TRP A 219 N MSE A 220 1555 1555 1.33 LINK C PRO B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N ALA B 23 1555 1555 1.33 LINK C GLY B 57 N MSE B 58 1555 1555 1.34 LINK C MSE B 58 N ASP B 59 1555 1555 1.32 LINK C ARG B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N ALA B 101 1555 1555 1.32 LINK C GLY B 184 N MSE B 185 1555 1555 1.33 LINK C MSE B 185 N GLU B 186 1555 1555 1.33 LINK C GLU B 215 N MSE B 216 1555 1555 1.34 LINK C MSE B 216 N GLY B 217 1555 1555 1.33 LINK C TRP B 219 N MSE B 220 1555 1555 1.33 LINK OD1 ASP A 35 MG MG A2001 1555 1555 2.12 LINK MG MG A2001 O HOH A2048 1555 1555 2.29 LINK MG MG A2001 O HOH A2098 1555 1555 2.04 LINK MG MG A2001 O HOH A2099 1555 1555 2.23 LINK MG MG A2001 O HOH A2100 1555 1555 2.02 LINK MG MG A2001 O HOH A2103 1555 1555 2.49 LINK OD1 ASP B 35 MG MG B1001 1555 1555 2.07 LINK MG MG B1001 O HOH B1084 1555 1555 2.15 LINK MG MG B1001 O HOH B1095 1555 1555 2.04 LINK MG MG B1001 O HOH B1109 1555 1555 2.25 LINK MG MG B1001 O HOH B1119 1555 1555 1.91 LINK MG MG B1001 O HOH B1120 1555 1555 2.07 SITE 1 AC1 7 ASP B 35 ASP B 137 HOH B1084 HOH B1095 SITE 2 AC1 7 HOH B1109 HOH B1119 HOH B1120 SITE 1 AC2 6 ASP A 35 HOH A2048 HOH A2098 HOH A2099 SITE 2 AC2 6 HOH A2100 HOH A2103 CRYST1 49.879 76.636 61.666 90.00 93.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020049 0.000000 0.001244 0.00000 SCALE2 0.000000 0.013049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016248 0.00000