HEADER GENE REGULATION 05-DEC-05 2F97 TITLE EFFECTOR BINDING DOMAIN OF BENM (CRYSTALS GENERATED FROM HIGH PH TITLE 2 CONDITIONS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BEN AND CAT OPERON TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAYLYI; SOURCE 3 ORGANISM_TAXID: 202950; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: BENM, BENR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3(BL21); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS BENM, LYSR-TYPE REGULATOR, TETRAMERIZATION, EFFECTOR BINDING DOMAIN, KEYWDS 2 INDUCER BINDING DOMAIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR O.C.EZEZIKA,S.HADDAD,E.L.NEIDLE,C.MOMANY REVDAT 6 30-AUG-23 2F97 1 REMARK SEQADV REVDAT 5 18-OCT-17 2F97 1 REMARK REVDAT 4 13-JUL-11 2F97 1 VERSN REVDAT 3 08-SEP-10 2F97 1 JRNL REVDAT 2 24-FEB-09 2F97 1 VERSN REVDAT 1 19-DEC-06 2F97 0 JRNL AUTH O.C.EZEZIKA,S.HADDAD,E.L.NEIDLE,C.MOMANY JRNL TITL OLIGOMERIZATION OF BENM, A LYSR-TYPE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR: STRUCTURAL BASIS FOR THE AGGREGATION OF PROTEINS JRNL TITL 3 IN THIS FAMILY. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 63 361 2007 JRNL REFN ESSN 1744-3091 JRNL PMID 17565172 JRNL DOI 10.1107/S1744309107019185 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL CRYSTALLIZATION OF THE EFFECTOR-BINDING DOMAINS OF BENM AND REMARK 1 TITL 2 CATM, LYSR-TYPE TRANSCRIPTIONAL REGULATORS FROM REMARK 1 TITL 3 ACINETOBACTER SP. ADP1. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 105 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.969 REMARK 3 FREE R VALUE TEST SET COUNT : 1218 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 43.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22300 REMARK 3 B22 (A**2) : 0.22300 REMARK 3 B33 (A**2) : -0.44700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.520 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1846 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 23 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2495 ; 0.915 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 50 ; 0.309 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 4.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;36.267 ;23.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;12.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1373 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 851 ; 0.162 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 24 ; 0.097 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1265 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4 ; 0.075 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 1 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1155 ; 0.515 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1813 ; 1.072 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3 ; 0.023 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 779 ; 2.099 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 23 ; 0.099 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 682 ; 3.242 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 47 ; 0.416 ;10.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8470 26.6240 -4.1530 REMARK 3 T TENSOR REMARK 3 T11: -0.1784 T22: 0.1153 REMARK 3 T33: -0.0323 T12: 0.0136 REMARK 3 T13: -0.0172 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 12.7714 L22: 4.8933 REMARK 3 L33: 6.1801 L12: -3.0005 REMARK 3 L13: 3.7733 L23: -3.4545 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.9866 S13: 0.0051 REMARK 3 S21: -0.2401 S22: 0.0111 S23: 0.3117 REMARK 3 S31: 0.0516 S32: -0.3357 S33: -0.0524 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5000 15.6760 -1.4800 REMARK 3 T TENSOR REMARK 3 T11: -0.1227 T22: 0.0217 REMARK 3 T33: -0.0309 T12: -0.0446 REMARK 3 T13: 0.0245 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.2913 L22: 2.6535 REMARK 3 L33: 3.7175 L12: -0.7757 REMARK 3 L13: 0.2296 L23: -0.0681 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.3522 S13: -0.2240 REMARK 3 S21: -0.0904 S22: 0.0214 S23: 0.0413 REMARK 3 S31: 0.2962 S32: -0.1827 S33: 0.0911 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9850 27.8040 0.0540 REMARK 3 T TENSOR REMARK 3 T11: -0.1819 T22: 0.0521 REMARK 3 T33: -0.0418 T12: 0.0098 REMARK 3 T13: -0.0192 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 2.4072 L22: 4.0503 REMARK 3 L33: 3.3054 L12: -1.0521 REMARK 3 L13: -0.0035 L23: -0.4539 REMARK 3 S TENSOR REMARK 3 S11: -0.1343 S12: 0.3108 S13: 0.1645 REMARK 3 S21: -0.0629 S22: 0.1122 S23: 0.0415 REMARK 3 S31: -0.2612 S32: -0.2966 S33: 0.0220 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0030 31.2530 14.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.0011 T22: 0.1616 REMARK 3 T33: -0.0279 T12: 0.1372 REMARK 3 T13: -0.0065 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 5.6930 L22: 2.4971 REMARK 3 L33: 8.4255 L12: -0.7818 REMARK 3 L13: 6.6716 L23: 0.2883 REMARK 3 S TENSOR REMARK 3 S11: -0.4786 S12: -0.0876 S13: -0.1042 REMARK 3 S21: 0.8069 S22: 0.3919 S23: 0.2971 REMARK 3 S31: -0.6824 S32: -0.2222 S33: 0.0867 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3200 11.1980 15.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: -0.0162 REMARK 3 T33: -0.0379 T12: 0.0428 REMARK 3 T13: 0.0311 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 6.4853 L22: 1.3190 REMARK 3 L33: 1.4216 L12: -2.1320 REMARK 3 L13: 0.6286 L23: -0.0326 REMARK 3 S TENSOR REMARK 3 S11: -0.2559 S12: -0.2744 S13: -0.3668 REMARK 3 S21: 0.1844 S22: 0.1384 S23: 0.0583 REMARK 3 S31: 0.3490 S32: -0.0057 S33: 0.1175 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8260 19.5050 18.7270 REMARK 3 T TENSOR REMARK 3 T11: -0.0851 T22: 0.0095 REMARK 3 T33: -0.0615 T12: 0.0707 REMARK 3 T13: -0.0015 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.6130 L22: 3.3739 REMARK 3 L33: 5.3761 L12: -0.0688 REMARK 3 L13: 0.6723 L23: -1.7364 REMARK 3 S TENSOR REMARK 3 S11: -0.1497 S12: -0.1970 S13: 0.1057 REMARK 3 S21: 0.4634 S22: 0.1105 S23: -0.1459 REMARK 3 S31: -0.1066 S32: 0.3204 S33: 0.0392 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1460 29.4990 11.2400 REMARK 3 T TENSOR REMARK 3 T11: -0.0603 T22: 0.0117 REMARK 3 T33: 0.0249 T12: 0.0606 REMARK 3 T13: -0.0160 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 8.4812 L22: 14.9217 REMARK 3 L33: 6.3217 L12: -10.2871 REMARK 3 L13: 2.9821 L23: -0.0269 REMARK 3 S TENSOR REMARK 3 S11: -0.1353 S12: 0.3285 S13: 0.4585 REMARK 3 S21: 0.2174 S22: -0.0277 S23: -0.2271 REMARK 3 S31: -0.4168 S32: -0.0362 S33: 0.1631 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9910 23.3560 22.0670 REMARK 3 T TENSOR REMARK 3 T11: -0.0070 T22: 0.0167 REMARK 3 T33: -0.0429 T12: 0.0904 REMARK 3 T13: 0.0103 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0706 L22: 6.0767 REMARK 3 L33: 11.0070 L12: -0.5995 REMARK 3 L13: 0.1755 L23: -4.7176 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: -0.1555 S13: 0.1777 REMARK 3 S21: 0.4320 S22: 0.2504 S23: 0.1815 REMARK 3 S31: -0.1801 S32: -0.1606 S33: -0.1257 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0160 23.4110 10.8070 REMARK 3 T TENSOR REMARK 3 T11: -0.1191 T22: -0.0058 REMARK 3 T33: -0.0237 T12: 0.0302 REMARK 3 T13: -0.0190 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.9328 L22: 3.5037 REMARK 3 L33: 4.4695 L12: 0.0527 REMARK 3 L13: -0.6612 L23: -0.8133 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: -0.0661 S13: 0.2937 REMARK 3 S21: 0.1833 S22: 0.0920 S23: -0.0372 REMARK 3 S31: -0.1677 S32: 0.2414 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2270 12.8910 12.3070 REMARK 3 T TENSOR REMARK 3 T11: -0.0470 T22: -0.0367 REMARK 3 T33: -0.0416 T12: 0.0341 REMARK 3 T13: 0.0128 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 2.0484 L22: 1.2369 REMARK 3 L33: 2.8247 L12: -0.1877 REMARK 3 L13: -0.3636 L23: 0.1643 REMARK 3 S TENSOR REMARK 3 S11: -0.1558 S12: -0.1064 S13: -0.1937 REMARK 3 S21: 0.0670 S22: 0.0460 S23: 0.0236 REMARK 3 S31: 0.3304 S32: 0.0236 S33: 0.1099 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3740 26.2400 8.4390 REMARK 3 T TENSOR REMARK 3 T11: -0.1449 T22: 0.0899 REMARK 3 T33: -0.0556 T12: 0.0258 REMARK 3 T13: 0.0287 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 15.4661 L22: 7.5059 REMARK 3 L33: 5.7545 L12: -6.9214 REMARK 3 L13: 7.7277 L23: -3.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.4495 S12: -0.2699 S13: 0.5757 REMARK 3 S21: 0.4620 S22: 0.0438 S23: 0.0086 REMARK 3 S31: -0.1922 S32: -0.7696 S33: 0.4056 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0080 20.9930 0.9000 REMARK 3 T TENSOR REMARK 3 T11: -0.1991 T22: 0.2572 REMARK 3 T33: 0.0224 T12: -0.0607 REMARK 3 T13: -0.0065 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 12.5920 L22: 10.4245 REMARK 3 L33: 3.8881 L12: -5.4235 REMARK 3 L13: 4.0993 L23: -2.0083 REMARK 3 S TENSOR REMARK 3 S11: -0.1057 S12: 0.2119 S13: -0.2173 REMARK 3 S21: -0.0716 S22: 0.1165 S23: 0.6445 REMARK 3 S31: 0.1532 S32: -0.6534 S33: -0.0107 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0530 11.1050 4.0280 REMARK 3 T TENSOR REMARK 3 T11: -0.1123 T22: 0.0981 REMARK 3 T33: 0.0772 T12: -0.1185 REMARK 3 T13: 0.0393 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 6.3539 L22: 10.9460 REMARK 3 L33: 10.6229 L12: -4.0770 REMARK 3 L13: -2.5497 L23: -5.0960 REMARK 3 S TENSOR REMARK 3 S11: -0.2597 S12: 0.3418 S13: -0.9128 REMARK 3 S21: 0.3962 S22: 0.2068 S23: 0.9332 REMARK 3 S31: 0.5301 S32: -1.0321 S33: 0.0529 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4770 8.5600 8.7700 REMARK 3 T TENSOR REMARK 3 T11: -0.0801 T22: 0.0183 REMARK 3 T33: 0.0599 T12: -0.1176 REMARK 3 T13: 0.0386 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 7.9356 L22: 26.6616 REMARK 3 L33: 9.0383 L12: -3.5073 REMARK 3 L13: -6.5431 L23: 0.6413 REMARK 3 S TENSOR REMARK 3 S11: -0.4354 S12: 0.0726 S13: -1.2085 REMARK 3 S21: 0.6133 S22: -0.1079 S23: 1.0119 REMARK 3 S31: 0.8810 S32: -0.6399 S33: 0.5434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 70.014 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.90 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 65.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2F6G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TAPS, LICL, IMIDAZOLE, TRIS, REMARK 280 NACL, CIS,CIS-MUCONATE, GLYCEROL, PH 9, MICROBATCH UNDER OIL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.84150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.76225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.92075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.84150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.92075 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 140.76225 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY APPLYING THE CRYSTALLOGRAPHIC REMARK 300 SYMMETRY OPERATION -X, Y,-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.04800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1040 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 81 REMARK 465 THR A 82 REMARK 465 LYS A 83 REMARK 465 ARG A 84 REMARK 465 ILE A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 VAL A 88 REMARK 465 LEU A 305 REMARK 465 GLU A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F6G RELATED DB: PDB REMARK 900 RELATED ID: 2F6P RELATED DB: PDB REMARK 900 RELATED ID: 2F78 RELATED DB: PDB REMARK 900 RELATED ID: 2F7A RELATED DB: PDB REMARK 900 RELATED ID: 2F7B RELATED DB: PDB REMARK 900 RELATED ID: 2F7C RELATED DB: PDB REMARK 900 RELATED ID: 2F8D RELATED DB: PDB DBREF 2F97 A 81 304 UNP O68014 BENM_ACIAD 81 304 SEQADV 2F97 LEU A 305 UNP O68014 CLONING ARTIFACT SEQADV 2F97 GLU A 306 UNP O68014 CLONING ARTIFACT SEQADV 2F97 HIS A 307 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 308 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 309 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 310 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 311 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 312 UNP O68014 EXPRESSION TAG SEQRES 1 A 232 MET THR LYS ARG ILE ALA SER VAL GLU LYS THR ILE ARG SEQRES 2 A 232 ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU LEU PRO SEQRES 3 A 232 ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO ASN LEU SEQRES 4 A 232 ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA GLN THR SEQRES 5 A 232 GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY PHE GLY SEQRES 6 A 232 ARG LEU LYS ILE SER ASP PRO ALA ILE LYS ARG THR LEU SEQRES 7 A 232 LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS ALA SER SEQRES 8 A 232 HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL HIS LEU SEQRES 9 A 232 ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR PRO SER SEQRES 10 A 232 SER PRO LYS PRO ASN PHE SER THR HIS VAL MET ASN ILE SEQRES 11 A 232 PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE ASN GLU SEQRES 12 A 232 VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL ALA ALA SEQRES 13 A 232 GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR GLN SER SEQRES 14 A 232 ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU LEU ASP SEQRES 15 A 232 PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL ARG ASN SEQRES 16 A 232 MET GLU GLU SER THR TYR ILE TYR SER LEU TYR GLU THR SEQRES 17 A 232 ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR GLU PRO SEQRES 18 A 232 PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS HET ACT A1003 7 HET PG4 A1001 13 HET PG4 A1002 13 HET PEG A1004 17 HET PEG A1005 17 HETNAM ACT ACETATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 PG4 2(C8 H18 O5) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 7 HOH *252(H2 O) HELIX 1 1 GLY A 98 LEU A 101 5 4 HELIX 2 2 LEU A 104 HIS A 116 1 13 HELIX 3 3 GLY A 127 GLU A 137 1 11 HELIX 4 4 HIS A 172 LYS A 178 5 7 HELIX 5 5 HIS A 183 ILE A 188 5 6 HELIX 6 6 ASN A 202 HIS A 214 1 13 HELIX 7 7 GLU A 226 ALA A 236 1 11 HELIX 8 8 SER A 246 ILE A 250 5 5 HELIX 9 9 SER A 279 GLY A 297 1 19 SHEET 1 A 8 ARG A 120 GLU A 125 0 SHEET 2 A 8 THR A 91 PHE A 96 1 N ILE A 94 O GLU A 122 SHEET 3 A 8 ALA A 142 GLY A 145 1 O ALA A 142 N GLY A 95 SHEET 4 A 8 ILE A 266 ARG A 274 -1 O TYR A 270 N GLY A 145 SHEET 5 A 8 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 A 8 ILE A 240 PRO A 244 -1 O SER A 241 N ALA A 167 SHEET 7 A 8 ILE A 192 LEU A 194 1 N LEU A 193 O ILE A 240 SHEET 8 A 8 ILE A 221 GLU A 223 1 O ASN A 222 N LEU A 194 SHEET 1 B 6 ARG A 120 GLU A 125 0 SHEET 2 B 6 THR A 91 PHE A 96 1 N ILE A 94 O GLU A 122 SHEET 3 B 6 ALA A 142 GLY A 145 1 O ALA A 142 N GLY A 95 SHEET 4 B 6 ILE A 266 ARG A 274 -1 O TYR A 270 N GLY A 145 SHEET 5 B 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 B 6 LEU A 255 PRO A 259 -1 O VAL A 258 N VAL A 166 CISPEP 1 TYR A 195 PRO A 196 0 -7.15 CISPEP 2 LYS A 200 PRO A 201 0 -2.42 SITE 1 AC1 6 LEU A 105 ILE A 108 PHE A 144 LEU A 159 SITE 2 AC1 6 TYR A 293 HOH A1014 SITE 1 AC2 10 GLY A 98 GLU A 125 MET A 126 GLY A 127 SITE 2 AC2 10 SER A 197 SER A 198 PRO A 199 ARG A 225 SITE 3 AC2 10 HOH A1135 HOH A1164 SITE 1 AC3 5 ARG A 93 TYR A 124 GLY A 138 ARG A 139 SITE 2 AC3 5 HOH A1118 SITE 1 AC4 2 HIS A 116 TYR A 283 SITE 1 AC5 5 LYS A 155 ASN A 275 GLU A 277 TYR A 286 SITE 2 AC5 5 TRP A 304 CRYST1 70.048 70.048 187.683 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005330 0.00000