HEADER TRANSFERASE 05-DEC-05 2F9A TITLE HMG-COA SYNTHASE FROM BRASSICA JUNCEA IN COMPLEX WITH F-244 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRASSICA JUNCEA; SOURCE 3 ORGANISM_TAXID: 3707; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS HMGS1, F-244, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.POJER,J.L.FERRER,S.B.RICHARD,J.P.NOEL REVDAT 8 09-OCT-24 2F9A 1 REMARK REVDAT 7 30-AUG-23 2F9A 1 REMARK LINK REVDAT 6 23-MAY-12 2F9A 1 HETNAM REVDAT 5 13-JUL-11 2F9A 1 VERSN REVDAT 4 24-FEB-09 2F9A 1 VERSN REVDAT 3 15-AUG-06 2F9A 1 JRNL REVDAT 2 08-AUG-06 2F9A 1 TITLE REVDAT 1 25-JUL-06 2F9A 0 JRNL AUTH F.POJER,J.L.FERRER,S.B.RICHARD,D.A.NAGEGOWDA,M.L.CHYE, JRNL AUTH 2 T.J.BACH,J.P.NOEL JRNL TITL STRUCTURAL BASIS FOR THE DESIGN OF POTENT AND JRNL TITL 2 SPECIES-SPECIFIC INHIBITORS OF 3-HYDROXY-3-METHYLGLUTARYL JRNL TITL 3 COA SYNTHASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 11491 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16864776 JRNL DOI 10.1073/PNAS.0604935103 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 15746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 839 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 872 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3607 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4868 ; 1.706 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 6.982 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;40.499 ;24.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;19.157 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.263 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2694 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1749 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2461 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 273 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2287 ; 0.838 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3578 ; 1.444 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1497 ; 2.191 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1290 ; 3.394 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 451 REMARK 3 RESIDUE RANGE : A 501 A 773 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5066 7.0515 18.0639 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0071 REMARK 3 T33: -0.0099 T12: -0.0354 REMARK 3 T13: 0.0084 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.2151 L22: 0.2902 REMARK 3 L33: 0.2684 L12: 0.1399 REMARK 3 L13: -0.1076 L23: 0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 0.0274 S13: 0.0009 REMARK 3 S21: -0.0556 S22: 0.0448 S23: -0.0170 REMARK 3 S31: 0.0072 S32: -0.0119 S33: -0.0053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979754 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NEMO REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 19.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 FOR SHELL : 4.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 2F82 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 20K, 0.25M TMAO, 100MM PIPES, REMARK 280 2MM DITHIOTHREITOL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.53000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 275.06000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 206.29500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 343.82500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.76500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 137.53000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 275.06000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 343.82500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 206.29500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.76500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 263 REMARK 465 ASN A 264 REMARK 465 ASP A 265 REMARK 465 PHE A 266 REMARK 465 LEU A 267 REMARK 465 ARG A 268 REMARK 465 ASN A 269 REMARK 465 ALA A 270 REMARK 465 SER A 271 REMARK 465 SER A 272 REMARK 465 ILE A 273 REMARK 465 ASP A 274 REMARK 465 GLU A 275 REMARK 465 ALA A 276 REMARK 465 ALA A 277 REMARK 465 LYS A 278 REMARK 465 GLU A 279 REMARK 465 LYS A 280 REMARK 465 PHE A 281 REMARK 465 THR A 282 REMARK 465 PRO A 283 REMARK 465 TYR A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 LEU A 287 REMARK 465 SER A 288 REMARK 465 LEU A 289 REMARK 465 ASP A 290 REMARK 465 GLU A 291 REMARK 465 SER A 292 REMARK 465 TYR A 293 REMARK 465 GLN A 294 REMARK 465 SER A 295 REMARK 465 ARG A 296 REMARK 465 ASP A 297 REMARK 465 LEU A 298 REMARK 465 GLU A 299 REMARK 465 LYS A 300 REMARK 465 VAL A 301 REMARK 465 SER A 302 REMARK 465 GLN A 303 REMARK 465 GLN A 304 REMARK 465 LEU A 305 REMARK 465 ALA A 306 REMARK 465 LYS A 307 REMARK 465 THR A 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 115 C ALA A 116 N -0.184 REMARK 500 ALA A 116 C CYS A 117 N 0.267 REMARK 500 CYS A 117 C CYS A 117 O 0.197 REMARK 500 CYS A 127 CB CYS A 127 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 116 O - C - N ANGL. DEV. = -22.5 DEGREES REMARK 500 CYS A 117 O - C - N ANGL. DEV. = -20.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 130.65 -38.08 REMARK 500 VAL A 111 -151.06 -137.14 REMARK 500 ASN A 115 102.00 -161.43 REMARK 500 ALA A 116 -102.94 57.12 REMARK 500 TYR A 190 70.50 -108.62 REMARK 500 TYR A 328 -115.49 50.98 REMARK 500 ASN A 373 -149.11 -135.28 REMARK 500 ASP A 387 54.64 37.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 114 ASN A 115 140.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 116 -23.38 REMARK 500 CYS A 117 -37.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F24 A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F82 RELATED DB: PDB REMARK 900 THE SAME ENZYME IN THE APO-FORM REMARK 900 RELATED ID: 2FA3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH ACETYL-COA AND ACETYL-CYS117. REMARK 900 RELATED ID: 2FA0 RELATED DB: PDB REMARK 900 THE SAME ENZYME IN COMPLEX WITH HMG-COA AND COVALENTLY BOUND TO HMG- REMARK 900 COA DBREF 2F9A A 2 451 UNP Q9M6U3 Q9M6U3_BRAJU 2 451 SEQRES 1 A 450 ALA LYS ASN VAL GLY ILE LEU ALA MET ASP ILE TYR PHE SEQRES 2 A 450 PRO PRO THR CYS VAL GLN GLN GLU ALA LEU GLU ALA HIS SEQRES 3 A 450 ASP GLY ALA SER LYS GLY LYS TYR THR ILE GLY LEU GLY SEQRES 4 A 450 GLN ASP CYS LEU ALA PHE CYS THR GLU LEU GLU ASP VAL SEQRES 5 A 450 ILE SER MET SER PHE ASN ALA VAL THR SER LEU LEU GLU SEQRES 6 A 450 LYS TYR LYS ILE ASP PRO LYS GLN ILE GLY ARG LEU GLU SEQRES 7 A 450 VAL GLY SER GLU THR VAL ILE ASP LYS SER LYS SER ILE SEQRES 8 A 450 LYS THR PHE LEU MET GLN LEU PHE GLU LYS CYS GLY ASN SEQRES 9 A 450 THR ASP VAL GLU GLY VAL ASP SER THR ASN ALA CYS TYR SEQRES 10 A 450 GLY GLY THR ALA ALA LEU LEU ASN CYS VAL ASN TRP VAL SEQRES 11 A 450 GLU SER ASN SER TRP ASP GLY ARG TYR GLY LEU VAL ILE SEQRES 12 A 450 CYS THR ASP SER ALA VAL TYR ALA GLU GLY PRO ALA ARG SEQRES 13 A 450 PRO THR GLY GLY ALA ALA ALA ILE ALA MET LEU ILE GLY SEQRES 14 A 450 PRO ASP ALA PRO ILE VAL PHE GLU SER LYS LEU ARG GLY SEQRES 15 A 450 SER HIS MET ALA HIS VAL TYR ASP PHE TYR LYS PRO ASN SEQRES 16 A 450 LEU ALA SER GLU TYR PRO VAL VAL ASP GLY LYS LEU SER SEQRES 17 A 450 GLN THR CYS TYR LEU MET ALA LEU ASP SER CYS TYR LYS SEQRES 18 A 450 HIS LEU CYS ASN LYS PHE GLU LYS LEU GLU GLY LYS GLU SEQRES 19 A 450 PHE SER ILE ASN ASP ALA ASP TYR PHE VAL PHE HIS SER SEQRES 20 A 450 PRO TYR ASN LYS LEU VAL GLN LYS SER PHE ALA ARG LEU SEQRES 21 A 450 LEU TYR ASN ASP PHE LEU ARG ASN ALA SER SER ILE ASP SEQRES 22 A 450 GLU ALA ALA LYS GLU LYS PHE THR PRO TYR SER SER LEU SEQRES 23 A 450 SER LEU ASP GLU SER TYR GLN SER ARG ASP LEU GLU LYS SEQRES 24 A 450 VAL SER GLN GLN LEU ALA LYS THR TYR TYR ASP ALA LYS SEQRES 25 A 450 VAL GLN PRO THR THR LEU VAL PRO LYS GLN VAL GLY ASN SEQRES 26 A 450 MET TYR THR ALA SER LEU TYR ALA ALA PHE ALA SER LEU SEQRES 27 A 450 VAL HIS ASN LYS HIS SER ASP LEU ALA GLY LYS ARG VAL SEQRES 28 A 450 VAL MET PHE SER TYR GLY SER GLY SER THR ALA THR MET SEQRES 29 A 450 PHE SER LEU ARG LEU CYS GLU ASN GLN SER PRO PHE SER SEQRES 30 A 450 LEU SER ASN ILE ALA SER VAL MET ASP VAL GLY GLY LYS SEQRES 31 A 450 LEU LYS ALA ARG HIS GLU TYR ALA PRO GLU LYS PHE VAL SEQRES 32 A 450 GLU THR MET LYS LEU MET GLU HIS ARG TYR GLY ALA LYS SEQRES 33 A 450 GLU PHE VAL THR SER LYS GLU GLY ILE LEU ASP LEU LEU SEQRES 34 A 450 ALA PRO GLY THR TYR TYR LEU LYS GLU VAL ASP SER LEU SEQRES 35 A 450 TYR ARG ARG PHE TYR GLY LYS LYS HET F24 A 500 23 HETNAM F24 (7R,12R,13R)-13-FORMYL-12,14-DIHYDROXY-3,5,7- HETNAM 2 F24 TRIMETHYLTETRADECA-2,4-DIENOIC ACID HETSYN F24 ANTIBIOTIC 1233A, BOUND FORM FORMUL 2 F24 C18 H30 O5 FORMUL 3 HOH *273(H2 O) HELIX 1 1 GLN A 21 ASP A 28 1 8 HELIX 2 2 ASP A 52 TYR A 68 1 17 HELIX 3 3 ASP A 71 LYS A 73 5 3 HELIX 4 4 SER A 91 MET A 97 1 7 HELIX 5 5 MET A 97 LYS A 102 1 6 HELIX 6 6 TYR A 118 GLU A 132 1 15 HELIX 7 7 ALA A 156 GLY A 160 5 5 HELIX 8 8 ASP A 205 GLY A 233 1 29 HELIX 9 9 SER A 237 ALA A 241 5 5 HELIX 10 10 TYR A 250 LEU A 262 1 13 HELIX 11 11 TYR A 309 VAL A 314 1 6 HELIX 12 12 GLN A 315 THR A 317 5 3 HELIX 13 13 THR A 318 GLY A 325 1 8 HELIX 14 14 MET A 327 THR A 329 5 3 HELIX 15 15 ALA A 330 HIS A 344 1 15 HELIX 16 16 SER A 378 ASP A 387 1 10 HELIX 17 17 ASP A 387 ALA A 394 1 8 HELIX 18 18 ALA A 399 TYR A 414 1 16 HELIX 19 19 ILE A 426 LEU A 430 5 5 SHEET 1 A 9 ASP A 112 SER A 113 0 SHEET 2 A 9 ILE A 75 GLY A 81 1 N VAL A 80 O SER A 113 SHEET 3 A 9 TYR A 140 SER A 148 1 O ILE A 144 N GLY A 81 SHEET 4 A 9 ALA A 162 GLY A 170 -1 O ILE A 165 N CYS A 145 SHEET 5 A 9 GLY A 6 TYR A 13 -1 N LEU A 8 O LEU A 168 SHEET 6 A 9 ILE A 175 MET A 186 -1 O ILE A 175 N ILE A 7 SHEET 7 A 9 THR A 362 LEU A 370 -1 O ARG A 369 N VAL A 176 SHEET 8 A 9 ARG A 351 GLY A 358 -1 N MET A 354 O PHE A 366 SHEET 9 A 9 TYR A 243 PHE A 246 1 N TYR A 243 O VAL A 353 SHEET 1 B 3 CYS A 43 ALA A 45 0 SHEET 2 B 3 THR A 17 GLN A 20 -1 N VAL A 19 O LEU A 44 SHEET 3 B 3 HIS A 396 GLU A 397 1 O HIS A 396 N CYS A 18 SHEET 1 C 2 PHE A 192 TYR A 193 0 SHEET 2 C 2 VAL A 203 VAL A 204 -1 O VAL A 203 N TYR A 193 SHEET 1 D 3 PHE A 419 VAL A 420 0 SHEET 2 D 3 TYR A 435 VAL A 440 -1 O VAL A 440 N PHE A 419 SHEET 3 D 3 ARG A 446 LYS A 450 -1 O GLY A 449 N TYR A 436 LINK SG CYS A 117 C8 F24 A 500 1555 1555 1.76 CISPEP 1 GLY A 360 SER A 361 0 1.16 CISPEP 2 SER A 375 PRO A 376 0 4.96 SITE 1 AC1 15 GLU A 83 ALA A 116 CYS A 117 SER A 209 SITE 2 AC1 15 GLN A 210 TYR A 213 HIS A 247 PRO A 249 SITE 3 AC1 15 TYR A 250 LEU A 253 LYS A 256 TYR A 328 SITE 4 AC1 15 GLY A 358 SER A 359 HOH A 677 CRYST1 61.170 61.170 412.590 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016348 0.009438 0.000000 0.00000 SCALE2 0.000000 0.018877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002424 0.00000