data_2F9F # _entry.id 2F9F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2F9F RCSB RCSB035616 WWPDB D_1000035616 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB GI:11497664 . unspecified TargetDB GR29A . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2F9F _pdbx_database_status.recvd_initial_deposition_date 2005-12-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhou, W.' 1 'Forouhar, F.' 2 'Conover, K.' 3 'Xiao, R.' 4 'Acton, T.B.' 5 'Montelione, G.T.' 6 'Tong, L.' 7 'Hunt, J.F.' 8 'Northeast Structural Genomics Consortium (NESG)' 9 # _citation.id primary _citation.title ;Crystal Structure of the Putative Mannosyl Transferase (wbaZ-1)from Archaeoglobus fulgidus ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhou, W.' 1 primary 'Forouhar, F.' 2 primary 'Conover, K.' 3 primary 'Xiao, R.' 4 primary 'Acton, T.B.' 5 primary 'Montelione, G.T.' 6 primary 'Tong, L.' 7 primary 'Hunt, J.F.' 8 # _cell.entry_id 2F9F _cell.length_a 41.072 _cell.length_b 57.124 _cell.length_c 60.589 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2F9F _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'first mannosyl transferase (wbaZ-1)' 20679.221 1 ? ? ? ? 2 water nat water 18.015 118 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GHHHHHHSHPVETSKFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKI (MSE)KIAPDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEA(MSE)ASGKPVIAVNEGGFKETVINEKTGYL VNADVNEIIDA(MSE)KKVSKNPDKFKKDCFRRAKEF ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHPVETSKFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNV KFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVS KNPDKFKKDCFRRAKEF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GR29A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 PRO n 1 12 VAL n 1 13 GLU n 1 14 THR n 1 15 SER n 1 16 LYS n 1 17 PHE n 1 18 LYS n 1 19 PHE n 1 20 LYS n 1 21 CYS n 1 22 TYR n 1 23 GLY n 1 24 ASP n 1 25 PHE n 1 26 TRP n 1 27 LEU n 1 28 SER n 1 29 VAL n 1 30 ASN n 1 31 ARG n 1 32 ILE n 1 33 TYR n 1 34 PRO n 1 35 GLU n 1 36 LYS n 1 37 ARG n 1 38 ILE n 1 39 GLU n 1 40 LEU n 1 41 GLN n 1 42 LEU n 1 43 GLU n 1 44 VAL n 1 45 PHE n 1 46 LYS n 1 47 LYS n 1 48 LEU n 1 49 GLN n 1 50 ASP n 1 51 GLU n 1 52 LYS n 1 53 LEU n 1 54 TYR n 1 55 ILE n 1 56 VAL n 1 57 GLY n 1 58 TRP n 1 59 PHE n 1 60 SER n 1 61 LYS n 1 62 GLY n 1 63 ASP n 1 64 HIS n 1 65 ALA n 1 66 GLU n 1 67 ARG n 1 68 TYR n 1 69 ALA n 1 70 ARG n 1 71 LYS n 1 72 ILE n 1 73 MSE n 1 74 LYS n 1 75 ILE n 1 76 ALA n 1 77 PRO n 1 78 ASP n 1 79 ASN n 1 80 VAL n 1 81 LYS n 1 82 PHE n 1 83 LEU n 1 84 GLY n 1 85 SER n 1 86 VAL n 1 87 SER n 1 88 GLU n 1 89 GLU n 1 90 GLU n 1 91 LEU n 1 92 ILE n 1 93 ASP n 1 94 LEU n 1 95 TYR n 1 96 SER n 1 97 ARG n 1 98 CYS n 1 99 LYS n 1 100 GLY n 1 101 LEU n 1 102 LEU n 1 103 CYS n 1 104 THR n 1 105 ALA n 1 106 LYS n 1 107 ASP n 1 108 GLU n 1 109 ASP n 1 110 PHE n 1 111 GLY n 1 112 LEU n 1 113 THR n 1 114 PRO n 1 115 ILE n 1 116 GLU n 1 117 ALA n 1 118 MSE n 1 119 ALA n 1 120 SER n 1 121 GLY n 1 122 LYS n 1 123 PRO n 1 124 VAL n 1 125 ILE n 1 126 ALA n 1 127 VAL n 1 128 ASN n 1 129 GLU n 1 130 GLY n 1 131 GLY n 1 132 PHE n 1 133 LYS n 1 134 GLU n 1 135 THR n 1 136 VAL n 1 137 ILE n 1 138 ASN n 1 139 GLU n 1 140 LYS n 1 141 THR n 1 142 GLY n 1 143 TYR n 1 144 LEU n 1 145 VAL n 1 146 ASN n 1 147 ALA n 1 148 ASP n 1 149 VAL n 1 150 ASN n 1 151 GLU n 1 152 ILE n 1 153 ILE n 1 154 ASP n 1 155 ALA n 1 156 MSE n 1 157 LYS n 1 158 LYS n 1 159 VAL n 1 160 SER n 1 161 LYS n 1 162 ASN n 1 163 PRO n 1 164 ASP n 1 165 LYS n 1 166 PHE n 1 167 LYS n 1 168 LYS n 1 169 ASP n 1 170 CYS n 1 171 PHE n 1 172 ARG n 1 173 ARG n 1 174 ALA n 1 175 LYS n 1 176 GLU n 1 177 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Archaeoglobus _entity_src_gen.pdbx_gene_src_gene wbaZ-1 _entity_src_gen.gene_src_species 'Archaeoglobus fulgidus' _entity_src_gen.gene_src_strain 'DSM 4304' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224325 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET21 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name JM109 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NP_068884 _struct_ref.pdbx_db_accession 11497664 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PVETSKFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEE LIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPDKFKKDC FRRAKEF ; _struct_ref.pdbx_align_begin 172 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2F9F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 177 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 11497664 _struct_ref_seq.db_align_beg 172 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 338 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 167 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2F9F MSE A 1 ? GB 11497664 ? ? 'CLONING ARTIFACT' -9 1 1 2F9F GLY A 2 ? GB 11497664 ? ? 'CLONING ARTIFACT' -8 2 1 2F9F HIS A 3 ? GB 11497664 ? ? 'CLONING ARTIFACT' -7 3 1 2F9F HIS A 4 ? GB 11497664 ? ? 'CLONING ARTIFACT' -6 4 1 2F9F HIS A 5 ? GB 11497664 ? ? 'CLONING ARTIFACT' -5 5 1 2F9F HIS A 6 ? GB 11497664 ? ? 'CLONING ARTIFACT' -4 6 1 2F9F HIS A 7 ? GB 11497664 ? ? 'CLONING ARTIFACT' -3 7 1 2F9F HIS A 8 ? GB 11497664 ? ? 'CLONING ARTIFACT' -2 8 1 2F9F SER A 9 ? GB 11497664 ? ? 'CLONING ARTIFACT' -1 9 1 2F9F HIS A 10 ? GB 11497664 ? ? 'CLONING ARTIFACT' 0 10 1 2F9F MSE A 73 ? GB 11497664 MET 234 'MODIFIED RESIDUE' 63 11 1 2F9F MSE A 118 ? GB 11497664 MET 279 'MODIFIED RESIDUE' 108 12 1 2F9F MSE A 156 ? GB 11497664 MET 317 'MODIFIED RESIDUE' 146 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2F9F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.71 _exptl_crystal.density_percent_sol 28.406 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '100 mM sodium acetate, 25% PEG 4k, 200 mM ammonium sulfate, and 5 mM DTT, pH 4.6, Microbatch, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2005-11-16 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97915 # _reflns.entry_id 2F9F _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.3 _reflns.d_resolution_high 1.80 _reflns.number_obs 13624 _reflns.number_all 13624 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.118 _reflns.pdbx_Rsym_value 0.094 _reflns.pdbx_netI_over_sigmaI 26.86 _reflns.B_iso_Wilson_estimate 9.8 _reflns.pdbx_redundancy 11.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.432 _reflns_shell.pdbx_Rsym_value 0.412 _reflns_shell.meanI_over_sigI_obs 7.04 _reflns_shell.pdbx_redundancy 11.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1323 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2F9F _refine.ls_number_reflns_obs 13431 _refine.ls_number_reflns_all 13624 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 326462.04 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.30 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 92.6 _refine.ls_R_factor_obs 0.186 _refine.ls_R_factor_all 0.19 _refine.ls_R_factor_R_work 0.186 _refine.ls_R_factor_R_free 0.218 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.4 _refine.ls_number_reflns_R_free 2197 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 14.4 _refine.aniso_B[1][1] 3.77 _refine.aniso_B[2][2] -1.80 _refine.aniso_B[3][3] -1.97 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.395979 _refine.solvent_model_param_bsol 45.86 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'Xtalview was also used for refinement.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model OVERALL _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2F9F _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.04 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.22 _refine_analyze.Luzzati_sigma_a_free 0.10 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1345 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 118 _refine_hist.number_atoms_total 1463 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 30.30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.74 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 2959 _refine_ls_shell.R_factor_R_work 0.183 _refine_ls_shell.percent_reflns_obs 76.6 _refine_ls_shell.R_factor_R_free 0.221 _refine_ls_shell.R_factor_R_free_error 0.013 _refine_ls_shell.percent_reflns_R_free 8.8 _refine_ls_shell.number_reflns_R_free 285 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2959 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2F9F _struct.title ;Crystal Structure of the Putative Mannosyl Transferase (wbaZ-1)from Archaeoglobus fulgidus, Northeast Structural Genomics Target GR29A. ; _struct.pdbx_descriptor 'first mannosyl transferase (wbaZ-1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F9F _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;alpha-beta protein, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 33 ? LYS A 36 ? TYR A 23 LYS A 26 5 ? 4 HELX_P HELX_P2 2 ARG A 37 ? LEU A 48 ? ARG A 27 LEU A 38 1 ? 12 HELX_P HELX_P3 3 HIS A 64 ? ALA A 76 ? HIS A 54 ALA A 66 1 ? 13 HELX_P HELX_P4 4 SER A 87 ? CYS A 98 ? SER A 77 CYS A 88 1 ? 12 HELX_P HELX_P5 5 GLY A 111 ? SER A 120 ? GLY A 101 SER A 110 1 ? 10 HELX_P HELX_P6 6 GLU A 129 ? VAL A 136 ? GLU A 119 VAL A 126 1 ? 8 HELX_P HELX_P7 7 ASP A 148 ? ASN A 162 ? ASP A 138 ASN A 152 1 ? 15 HELX_P HELX_P8 8 PHE A 166 ? GLU A 176 ? PHE A 156 GLU A 166 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ILE 72 C ? ? ? 1_555 A MSE 73 N ? ? A ILE 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 73 C ? ? ? 1_555 A LYS 74 N ? ? A MSE 63 A LYS 64 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A ALA 117 C ? ? ? 1_555 A MSE 118 N ? ? A ALA 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 118 C ? ? ? 1_555 A ALA 119 N ? ? A MSE 108 A ALA 109 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A ALA 155 C ? ? ? 1_555 A MSE 156 N ? ? A ALA 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 156 C ? ? ? 1_555 A LYS 157 N ? ? A MSE 146 A LYS 147 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 80 ? GLY A 84 ? VAL A 70 GLY A 74 A 2 LEU A 53 ? VAL A 56 ? LEU A 43 VAL A 46 A 3 TRP A 26 ? VAL A 29 ? TRP A 16 VAL A 19 A 4 GLY A 100 ? CYS A 103 ? GLY A 90 CYS A 93 A 5 VAL A 124 ? VAL A 127 ? VAL A 114 VAL A 117 A 6 GLY A 142 ? VAL A 145 ? GLY A 132 VAL A 135 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 81 ? O LYS A 71 N ILE A 55 ? N ILE A 45 A 2 3 O VAL A 56 ? O VAL A 46 N SER A 28 ? N SER A 18 A 3 4 N LEU A 27 ? N LEU A 17 O LEU A 102 ? O LEU A 92 A 4 5 N LEU A 101 ? N LEU A 91 O ILE A 125 ? O ILE A 115 A 5 6 N ALA A 126 ? N ALA A 116 O VAL A 145 ? O VAL A 135 # _database_PDB_matrix.entry_id 2F9F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2F9F _atom_sites.fract_transf_matrix[1][1] 0.024347 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017506 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016505 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -9 ? ? ? A . n A 1 2 GLY 2 -8 ? ? ? A . n A 1 3 HIS 3 -7 ? ? ? A . n A 1 4 HIS 4 -6 ? ? ? A . n A 1 5 HIS 5 -5 ? ? ? A . n A 1 6 HIS 6 -4 ? ? ? A . n A 1 7 HIS 7 -3 ? ? ? A . n A 1 8 HIS 8 -2 ? ? ? A . n A 1 9 SER 9 -1 ? ? ? A . n A 1 10 HIS 10 0 ? ? ? A . n A 1 11 PRO 11 1 ? ? ? A . n A 1 12 VAL 12 2 2 VAL VAL A . n A 1 13 GLU 13 3 3 GLU GLU A . n A 1 14 THR 14 4 4 THR THR A . n A 1 15 SER 15 5 5 SER SER A . n A 1 16 LYS 16 6 6 LYS LYS A . n A 1 17 PHE 17 7 7 PHE PHE A . n A 1 18 LYS 18 8 8 LYS LYS A . n A 1 19 PHE 19 9 9 PHE PHE A . n A 1 20 LYS 20 10 10 LYS LYS A . n A 1 21 CYS 21 11 11 CYS CYS A . n A 1 22 TYR 22 12 12 TYR TYR A . n A 1 23 GLY 23 13 13 GLY GLY A . n A 1 24 ASP 24 14 14 ASP ASP A . n A 1 25 PHE 25 15 15 PHE PHE A . n A 1 26 TRP 26 16 16 TRP TRP A . n A 1 27 LEU 27 17 17 LEU LEU A . n A 1 28 SER 28 18 18 SER SER A . n A 1 29 VAL 29 19 19 VAL VAL A . n A 1 30 ASN 30 20 20 ASN ASN A . n A 1 31 ARG 31 21 21 ARG ARG A . n A 1 32 ILE 32 22 22 ILE ILE A . n A 1 33 TYR 33 23 23 TYR TYR A . n A 1 34 PRO 34 24 24 PRO PRO A . n A 1 35 GLU 35 25 25 GLU GLU A . n A 1 36 LYS 36 26 26 LYS LYS A . n A 1 37 ARG 37 27 27 ARG ARG A . n A 1 38 ILE 38 28 28 ILE ILE A . n A 1 39 GLU 39 29 29 GLU GLU A . n A 1 40 LEU 40 30 30 LEU LEU A . n A 1 41 GLN 41 31 31 GLN GLN A . n A 1 42 LEU 42 32 32 LEU LEU A . n A 1 43 GLU 43 33 33 GLU GLU A . n A 1 44 VAL 44 34 34 VAL VAL A . n A 1 45 PHE 45 35 35 PHE PHE A . n A 1 46 LYS 46 36 36 LYS LYS A . n A 1 47 LYS 47 37 37 LYS LYS A . n A 1 48 LEU 48 38 38 LEU LEU A . n A 1 49 GLN 49 39 39 GLN GLN A . n A 1 50 ASP 50 40 40 ASP ASP A . n A 1 51 GLU 51 41 41 GLU GLU A . n A 1 52 LYS 52 42 42 LYS LYS A . n A 1 53 LEU 53 43 43 LEU LEU A . n A 1 54 TYR 54 44 44 TYR TYR A . n A 1 55 ILE 55 45 45 ILE ILE A . n A 1 56 VAL 56 46 46 VAL VAL A . n A 1 57 GLY 57 47 47 GLY GLY A . n A 1 58 TRP 58 48 48 TRP TRP A . n A 1 59 PHE 59 49 49 PHE PHE A . n A 1 60 SER 60 50 50 SER SER A . n A 1 61 LYS 61 51 51 LYS LYS A . n A 1 62 GLY 62 52 52 GLY GLY A . n A 1 63 ASP 63 53 53 ASP ASP A . n A 1 64 HIS 64 54 54 HIS HIS A . n A 1 65 ALA 65 55 55 ALA ALA A . n A 1 66 GLU 66 56 56 GLU GLU A . n A 1 67 ARG 67 57 57 ARG ARG A . n A 1 68 TYR 68 58 58 TYR TYR A . n A 1 69 ALA 69 59 59 ALA ALA A . n A 1 70 ARG 70 60 60 ARG ARG A . n A 1 71 LYS 71 61 61 LYS LYS A . n A 1 72 ILE 72 62 62 ILE ILE A . n A 1 73 MSE 73 63 63 MSE MSE A . n A 1 74 LYS 74 64 64 LYS LYS A . n A 1 75 ILE 75 65 65 ILE ILE A . n A 1 76 ALA 76 66 66 ALA ALA A . n A 1 77 PRO 77 67 67 PRO PRO A . n A 1 78 ASP 78 68 68 ASP ASP A . n A 1 79 ASN 79 69 69 ASN ASN A . n A 1 80 VAL 80 70 70 VAL VAL A . n A 1 81 LYS 81 71 71 LYS LYS A . n A 1 82 PHE 82 72 72 PHE PHE A . n A 1 83 LEU 83 73 73 LEU LEU A . n A 1 84 GLY 84 74 74 GLY GLY A . n A 1 85 SER 85 75 75 SER SER A . n A 1 86 VAL 86 76 76 VAL VAL A . n A 1 87 SER 87 77 77 SER SER A . n A 1 88 GLU 88 78 78 GLU GLU A . n A 1 89 GLU 89 79 79 GLU GLU A . n A 1 90 GLU 90 80 80 GLU GLU A . n A 1 91 LEU 91 81 81 LEU LEU A . n A 1 92 ILE 92 82 82 ILE ILE A . n A 1 93 ASP 93 83 83 ASP ASP A . n A 1 94 LEU 94 84 84 LEU LEU A . n A 1 95 TYR 95 85 85 TYR TYR A . n A 1 96 SER 96 86 86 SER SER A . n A 1 97 ARG 97 87 87 ARG ARG A . n A 1 98 CYS 98 88 88 CYS CYS A . n A 1 99 LYS 99 89 89 LYS LYS A . n A 1 100 GLY 100 90 90 GLY GLY A . n A 1 101 LEU 101 91 91 LEU LEU A . n A 1 102 LEU 102 92 92 LEU LEU A . n A 1 103 CYS 103 93 93 CYS CYS A . n A 1 104 THR 104 94 94 THR THR A . n A 1 105 ALA 105 95 95 ALA ALA A . n A 1 106 LYS 106 96 96 LYS LYS A . n A 1 107 ASP 107 97 97 ASP ASP A . n A 1 108 GLU 108 98 98 GLU GLU A . n A 1 109 ASP 109 99 99 ASP ASP A . n A 1 110 PHE 110 100 100 PHE PHE A . n A 1 111 GLY 111 101 101 GLY GLY A . n A 1 112 LEU 112 102 102 LEU LEU A . n A 1 113 THR 113 103 103 THR THR A . n A 1 114 PRO 114 104 104 PRO PRO A . n A 1 115 ILE 115 105 105 ILE ILE A . n A 1 116 GLU 116 106 106 GLU GLU A . n A 1 117 ALA 117 107 107 ALA ALA A . n A 1 118 MSE 118 108 108 MSE MSE A . n A 1 119 ALA 119 109 109 ALA ALA A . n A 1 120 SER 120 110 110 SER SER A . n A 1 121 GLY 121 111 111 GLY GLY A . n A 1 122 LYS 122 112 112 LYS LYS A . n A 1 123 PRO 123 113 113 PRO PRO A . n A 1 124 VAL 124 114 114 VAL VAL A . n A 1 125 ILE 125 115 115 ILE ILE A . n A 1 126 ALA 126 116 116 ALA ALA A . n A 1 127 VAL 127 117 117 VAL VAL A . n A 1 128 ASN 128 118 118 ASN ASN A . n A 1 129 GLU 129 119 119 GLU GLU A . n A 1 130 GLY 130 120 120 GLY GLY A . n A 1 131 GLY 131 121 121 GLY GLY A . n A 1 132 PHE 132 122 122 PHE PHE A . n A 1 133 LYS 133 123 123 LYS LYS A . n A 1 134 GLU 134 124 124 GLU GLU A . n A 1 135 THR 135 125 125 THR THR A . n A 1 136 VAL 136 126 126 VAL VAL A . n A 1 137 ILE 137 127 127 ILE ILE A . n A 1 138 ASN 138 128 128 ASN ASN A . n A 1 139 GLU 139 129 129 GLU GLU A . n A 1 140 LYS 140 130 130 LYS LYS A . n A 1 141 THR 141 131 131 THR THR A . n A 1 142 GLY 142 132 132 GLY GLY A . n A 1 143 TYR 143 133 133 TYR TYR A . n A 1 144 LEU 144 134 134 LEU LEU A . n A 1 145 VAL 145 135 135 VAL VAL A . n A 1 146 ASN 146 136 136 ASN ASN A . n A 1 147 ALA 147 137 137 ALA ALA A . n A 1 148 ASP 148 138 138 ASP ASP A . n A 1 149 VAL 149 139 139 VAL VAL A . n A 1 150 ASN 150 140 140 ASN ASN A . n A 1 151 GLU 151 141 141 GLU GLU A . n A 1 152 ILE 152 142 142 ILE ILE A . n A 1 153 ILE 153 143 143 ILE ILE A . n A 1 154 ASP 154 144 144 ASP ASP A . n A 1 155 ALA 155 145 145 ALA ALA A . n A 1 156 MSE 156 146 146 MSE MSE A . n A 1 157 LYS 157 147 147 LYS LYS A . n A 1 158 LYS 158 148 148 LYS LYS A . n A 1 159 VAL 159 149 149 VAL VAL A . n A 1 160 SER 160 150 150 SER SER A . n A 1 161 LYS 161 151 151 LYS LYS A . n A 1 162 ASN 162 152 152 ASN ASN A . n A 1 163 PRO 163 153 153 PRO PRO A . n A 1 164 ASP 164 154 154 ASP ASP A . n A 1 165 LYS 165 155 155 LYS LYS A . n A 1 166 PHE 166 156 156 PHE PHE A . n A 1 167 LYS 167 157 157 LYS LYS A . n A 1 168 LYS 168 158 158 LYS LYS A . n A 1 169 ASP 169 159 159 ASP ASP A . n A 1 170 CYS 170 160 160 CYS CYS A . n A 1 171 PHE 171 161 161 PHE PHE A . n A 1 172 ARG 172 162 162 ARG ARG A . n A 1 173 ARG 173 163 163 ARG ARG A . n A 1 174 ALA 174 164 164 ALA ALA A . n A 1 175 LYS 175 165 165 LYS LYS A . n A 1 176 GLU 176 166 166 GLU GLU A . n A 1 177 PHE 177 167 167 PHE PHE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 168 1 HOH HOH A . B 2 HOH 2 169 2 HOH HOH A . B 2 HOH 3 170 3 HOH HOH A . B 2 HOH 4 171 4 HOH HOH A . B 2 HOH 5 172 5 HOH HOH A . B 2 HOH 6 173 6 HOH HOH A . B 2 HOH 7 174 7 HOH HOH A . B 2 HOH 8 175 8 HOH HOH A . B 2 HOH 9 176 9 HOH HOH A . B 2 HOH 10 177 10 HOH HOH A . B 2 HOH 11 178 11 HOH HOH A . B 2 HOH 12 179 12 HOH HOH A . B 2 HOH 13 180 13 HOH HOH A . B 2 HOH 14 181 14 HOH HOH A . B 2 HOH 15 182 15 HOH HOH A . B 2 HOH 16 183 16 HOH HOH A . B 2 HOH 17 184 17 HOH HOH A . B 2 HOH 18 185 18 HOH HOH A . B 2 HOH 19 186 19 HOH HOH A . B 2 HOH 20 187 20 HOH HOH A . B 2 HOH 21 188 21 HOH HOH A . B 2 HOH 22 189 22 HOH HOH A . B 2 HOH 23 190 23 HOH HOH A . B 2 HOH 24 191 24 HOH HOH A . B 2 HOH 25 192 25 HOH HOH A . B 2 HOH 26 193 26 HOH HOH A . B 2 HOH 27 194 27 HOH HOH A . B 2 HOH 28 195 28 HOH HOH A . B 2 HOH 29 196 29 HOH HOH A . B 2 HOH 30 197 30 HOH HOH A . B 2 HOH 31 198 31 HOH HOH A . B 2 HOH 32 199 32 HOH HOH A . B 2 HOH 33 200 33 HOH HOH A . B 2 HOH 34 201 34 HOH HOH A . B 2 HOH 35 202 35 HOH HOH A . B 2 HOH 36 203 36 HOH HOH A . B 2 HOH 37 204 37 HOH HOH A . B 2 HOH 38 205 38 HOH HOH A . B 2 HOH 39 206 39 HOH HOH A . B 2 HOH 40 207 40 HOH HOH A . B 2 HOH 41 208 41 HOH HOH A . B 2 HOH 42 209 42 HOH HOH A . B 2 HOH 43 210 43 HOH HOH A . B 2 HOH 44 211 44 HOH HOH A . B 2 HOH 45 212 45 HOH HOH A . B 2 HOH 46 213 46 HOH HOH A . B 2 HOH 47 214 47 HOH HOH A . B 2 HOH 48 215 48 HOH HOH A . B 2 HOH 49 216 49 HOH HOH A . B 2 HOH 50 217 50 HOH HOH A . B 2 HOH 51 218 51 HOH HOH A . B 2 HOH 52 219 52 HOH HOH A . B 2 HOH 53 220 53 HOH HOH A . B 2 HOH 54 221 54 HOH HOH A . B 2 HOH 55 222 55 HOH HOH A . B 2 HOH 56 223 56 HOH HOH A . B 2 HOH 57 224 57 HOH HOH A . B 2 HOH 58 225 58 HOH HOH A . B 2 HOH 59 226 59 HOH HOH A . B 2 HOH 60 227 60 HOH HOH A . B 2 HOH 61 228 61 HOH HOH A . B 2 HOH 62 229 62 HOH HOH A . B 2 HOH 63 230 63 HOH HOH A . B 2 HOH 64 231 64 HOH HOH A . B 2 HOH 65 232 65 HOH HOH A . B 2 HOH 66 233 66 HOH HOH A . B 2 HOH 67 234 67 HOH HOH A . B 2 HOH 68 235 68 HOH HOH A . B 2 HOH 69 236 69 HOH HOH A . B 2 HOH 70 237 70 HOH HOH A . B 2 HOH 71 238 71 HOH HOH A . B 2 HOH 72 239 72 HOH HOH A . B 2 HOH 73 240 73 HOH HOH A . B 2 HOH 74 241 74 HOH HOH A . B 2 HOH 75 242 75 HOH HOH A . B 2 HOH 76 243 76 HOH HOH A . B 2 HOH 77 244 77 HOH HOH A . B 2 HOH 78 245 78 HOH HOH A . B 2 HOH 79 246 79 HOH HOH A . B 2 HOH 80 247 80 HOH HOH A . B 2 HOH 81 248 81 HOH HOH A . B 2 HOH 82 249 82 HOH HOH A . B 2 HOH 83 250 83 HOH HOH A . B 2 HOH 84 251 84 HOH HOH A . B 2 HOH 85 252 85 HOH HOH A . B 2 HOH 86 253 86 HOH HOH A . B 2 HOH 87 254 87 HOH HOH A . B 2 HOH 88 255 88 HOH HOH A . B 2 HOH 89 256 89 HOH HOH A . B 2 HOH 90 257 90 HOH HOH A . B 2 HOH 91 258 91 HOH HOH A . B 2 HOH 92 259 92 HOH HOH A . B 2 HOH 93 260 93 HOH HOH A . B 2 HOH 94 261 94 HOH HOH A . B 2 HOH 95 262 95 HOH HOH A . B 2 HOH 96 263 96 HOH HOH A . B 2 HOH 97 264 97 HOH HOH A . B 2 HOH 98 265 98 HOH HOH A . B 2 HOH 99 266 99 HOH HOH A . B 2 HOH 100 267 100 HOH HOH A . B 2 HOH 101 268 101 HOH HOH A . B 2 HOH 102 269 102 HOH HOH A . B 2 HOH 103 270 103 HOH HOH A . B 2 HOH 104 271 104 HOH HOH A . B 2 HOH 105 272 105 HOH HOH A . B 2 HOH 106 273 106 HOH HOH A . B 2 HOH 107 274 107 HOH HOH A . B 2 HOH 108 275 108 HOH HOH A . B 2 HOH 109 276 109 HOH HOH A . B 2 HOH 110 277 110 HOH HOH A . B 2 HOH 111 278 111 HOH HOH A . B 2 HOH 112 279 112 HOH HOH A . B 2 HOH 113 280 113 HOH HOH A . B 2 HOH 114 281 114 HOH HOH A . B 2 HOH 115 282 115 HOH HOH A . B 2 HOH 116 283 116 HOH HOH A . B 2 HOH 117 284 117 HOH HOH A . B 2 HOH 118 285 118 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 73 A MSE 63 ? MET SELENOMETHIONINE 2 A MSE 118 A MSE 108 ? MET SELENOMETHIONINE 3 A MSE 156 A MSE 146 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-06 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SnB phasing . ? 4 SOLVE phasing . ? 5 RESOLVE phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 10 ? ? -123.63 -55.48 2 1 ASP A 14 ? ? -96.78 32.77 3 1 ASN A 20 ? ? -172.14 134.35 4 1 TRP A 48 ? ? -133.89 -150.57 5 1 ALA A 137 ? ? -69.07 81.81 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -9 ? A MSE 1 2 1 Y 1 A GLY -8 ? A GLY 2 3 1 Y 1 A HIS -7 ? A HIS 3 4 1 Y 1 A HIS -6 ? A HIS 4 5 1 Y 1 A HIS -5 ? A HIS 5 6 1 Y 1 A HIS -4 ? A HIS 6 7 1 Y 1 A HIS -3 ? A HIS 7 8 1 Y 1 A HIS -2 ? A HIS 8 9 1 Y 1 A SER -1 ? A SER 9 10 1 Y 1 A HIS 0 ? A HIS 10 11 1 Y 1 A PRO 1 ? A PRO 11 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #