data_2F9L # _entry.id 2F9L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2F9L pdb_00002f9l 10.2210/pdb2f9l/pdb RCSB RCSB035622 ? ? WWPDB D_1000035622 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2F9M _pdbx_database_related.details '3D structure of active human Rab11b GTPase' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2F9L _pdbx_database_status.recvd_initial_deposition_date 2005-12-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Scapin, S.M.N.' 1 'Guimaraes, B.G.' 2 'Zanchin, N.I.T.' 3 # _citation.id primary _citation.title 'The crystal structure of the small GTPase Rab11b reveals critical differences relative to the Rab11a isoform.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 154 _citation.page_first 260 _citation.page_last 268 _citation.year 2006 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16545962 _citation.pdbx_database_id_DOI 10.1016/j.jsb.2006.01.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scapin, S.M.' 1 ? primary 'Carneiro, F.R.' 2 ? primary 'Alves, A.C.' 3 ? primary 'Medrano, F.J.' 4 ? primary 'Guimaraes, B.G.' 5 ? primary 'Zanchin, N.I.' 6 ? # _cell.entry_id 2F9L _cell.length_a 45.790 _cell.length_b 52.218 _cell.length_c 59.351 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2F9L _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RAB11B, member RAS oncogene family' 22473.238 1 3.6.5.2 ? 'GTPase domain, residues 8 to 205' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 4 water nat water 18.015 185 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK NILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD ; _entity_poly.pdbx_seq_one_letter_code_can ;MYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK NILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 TYR n 1 3 ASP n 1 4 TYR n 1 5 LEU n 1 6 PHE n 1 7 LYS n 1 8 VAL n 1 9 VAL n 1 10 LEU n 1 11 ILE n 1 12 GLY n 1 13 ASP n 1 14 SER n 1 15 GLY n 1 16 VAL n 1 17 GLY n 1 18 LYS n 1 19 SER n 1 20 ASN n 1 21 LEU n 1 22 LEU n 1 23 SER n 1 24 ARG n 1 25 PHE n 1 26 THR n 1 27 ARG n 1 28 ASN n 1 29 GLU n 1 30 PHE n 1 31 ASN n 1 32 LEU n 1 33 GLU n 1 34 SER n 1 35 LYS n 1 36 SER n 1 37 THR n 1 38 ILE n 1 39 GLY n 1 40 VAL n 1 41 GLU n 1 42 PHE n 1 43 ALA n 1 44 THR n 1 45 ARG n 1 46 SER n 1 47 ILE n 1 48 GLN n 1 49 VAL n 1 50 ASP n 1 51 GLY n 1 52 LYS n 1 53 THR n 1 54 ILE n 1 55 LYS n 1 56 ALA n 1 57 GLN n 1 58 ILE n 1 59 TRP n 1 60 ASP n 1 61 THR n 1 62 ALA n 1 63 GLY n 1 64 GLN n 1 65 GLU n 1 66 ARG n 1 67 TYR n 1 68 ARG n 1 69 ARG n 1 70 ILE n 1 71 THR n 1 72 SER n 1 73 ALA n 1 74 TYR n 1 75 TYR n 1 76 ARG n 1 77 GLY n 1 78 ALA n 1 79 VAL n 1 80 GLY n 1 81 ALA n 1 82 LEU n 1 83 LEU n 1 84 VAL n 1 85 TYR n 1 86 ASP n 1 87 ILE n 1 88 ALA n 1 89 LYS n 1 90 HIS n 1 91 LEU n 1 92 THR n 1 93 TYR n 1 94 GLU n 1 95 ASN n 1 96 VAL n 1 97 GLU n 1 98 ARG n 1 99 TRP n 1 100 LEU n 1 101 LYS n 1 102 GLU n 1 103 LEU n 1 104 ARG n 1 105 ASP n 1 106 HIS n 1 107 ALA n 1 108 ASP n 1 109 SER n 1 110 ASN n 1 111 ILE n 1 112 VAL n 1 113 ILE n 1 114 MET n 1 115 LEU n 1 116 VAL n 1 117 GLY n 1 118 ASN n 1 119 LYS n 1 120 SER n 1 121 ASP n 1 122 LEU n 1 123 ARG n 1 124 HIS n 1 125 LEU n 1 126 ARG n 1 127 ALA n 1 128 VAL n 1 129 PRO n 1 130 THR n 1 131 ASP n 1 132 GLU n 1 133 ALA n 1 134 ARG n 1 135 ALA n 1 136 PHE n 1 137 ALA n 1 138 GLU n 1 139 LYS n 1 140 ASN n 1 141 ASN n 1 142 LEU n 1 143 SER n 1 144 PHE n 1 145 ILE n 1 146 GLU n 1 147 THR n 1 148 SER n 1 149 ALA n 1 150 LEU n 1 151 ASP n 1 152 SER n 1 153 THR n 1 154 ASN n 1 155 VAL n 1 156 GLU n 1 157 GLU n 1 158 ALA n 1 159 PHE n 1 160 LYS n 1 161 ASN n 1 162 ILE n 1 163 LEU n 1 164 THR n 1 165 GLU n 1 166 ILE n 1 167 TYR n 1 168 ARG n 1 169 ILE n 1 170 VAL n 1 171 SER n 1 172 GLN n 1 173 LYS n 1 174 GLN n 1 175 ILE n 1 176 ALA n 1 177 ASP n 1 178 ARG n 1 179 ALA n 1 180 ALA n 1 181 HIS n 1 182 ASP n 1 183 GLU n 1 184 SER n 1 185 PRO n 1 186 GLY n 1 187 ASN n 1 188 ASN n 1 189 VAL n 1 190 VAL n 1 191 ASP n 1 192 ILE n 1 193 SER n 1 194 VAL n 1 195 PRO n 1 196 PRO n 1 197 THR n 1 198 THR n 1 199 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5alpha _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCYTEXP3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RB11B_HUMAN _struct_ref.pdbx_db_accession Q15907 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN ILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD ; _struct_ref.pdbx_align_begin 8 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2F9L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 199 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15907 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 205 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2F9L _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q15907 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 7 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2F9L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.6 _exptl_crystal.density_percent_sol 22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.8 _exptl_crystal_grow.pdbx_details ;Reservoir solution: 0.1M Tris-HCl pH8.8, 30% PEG 4000 Protein sample: 30 mg/ml Rab11b-GDP, 10mM Tris-HCl pH7.4, 0.1mM Mg Chloride , VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-08-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.43 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LNLS BEAMLINE D03B-MX1' _diffrn_source.pdbx_synchrotron_site LNLS _diffrn_source.pdbx_synchrotron_beamline D03B-MX1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.43 # _reflns.entry_id 2F9L _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 39.22 _reflns.d_resolution_high 1.55 _reflns.number_obs 21134 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.062 _reflns.pdbx_netI_over_sigmaI 18.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.377 _reflns_shell.meanI_over_sigI_obs 5.0 _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2F9L _refine.ls_number_reflns_obs 20119 _refine.ls_number_reflns_all 21252 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.22 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 99.77 _refine.ls_R_factor_obs 0.18813 _refine.ls_R_factor_all 0.18813 _refine.ls_R_factor_R_work 0.18564 _refine.ls_R_factor_R_free 0.23755 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1091 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.B_iso_mean 18.203 _refine.aniso_B[1][1] -0.34 _refine.aniso_B[2][2] -0.70 _refine.aniso_B[3][3] 1.04 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1OIV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.098 _refine.pdbx_overall_ESU_R_Free 0.104 _refine.overall_SU_ML 0.064 _refine.overall_SU_B 1.734 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1341 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 1555 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 39.22 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1391 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.720 1.969 ? 1892 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.909 5.000 ? 171 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.806 24.531 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.101 15.000 ? 226 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.694 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 220 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1033 'X-RAY DIFFRACTION' ? r_nbd_refined 0.228 0.200 ? 824 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.332 0.200 ? 1001 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.152 0.200 ? 203 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.211 0.200 ? 88 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.190 0.200 ? 42 'X-RAY DIFFRACTION' ? r_mcbond_it 0.975 1.500 ? 862 'X-RAY DIFFRACTION' ? r_mcangle_it 1.631 2.000 ? 1362 'X-RAY DIFFRACTION' ? r_scbond_it 2.400 3.000 ? 601 'X-RAY DIFFRACTION' ? r_scangle_it 3.464 4.500 ? 530 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.550 _refine_ls_shell.d_res_low 1.590 _refine_ls_shell.number_reflns_R_work 1434 _refine_ls_shell.R_factor_R_work 0.321 _refine_ls_shell.percent_reflns_obs 99.09 _refine_ls_shell.R_factor_R_free 0.394 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 83 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2F9L _struct.title '3D structure of inactive human Rab11b GTPase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F9L _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Rab11b GTPase, vesicle transport, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 17 ? ASN A 28 ? GLY A 23 ASN A 34 1 ? 12 HELX_P HELX_P2 2 GLY A 63 ? TYR A 67 ? GLY A 69 TYR A 73 5 ? 5 HELX_P HELX_P3 3 THR A 71 ? ARG A 76 ? THR A 77 ARG A 82 1 ? 6 HELX_P HELX_P4 4 LYS A 89 ? ASN A 95 ? LYS A 95 ASN A 101 1 ? 7 HELX_P HELX_P5 5 ASN A 95 ? ALA A 107 ? ASN A 101 ALA A 113 1 ? 13 HELX_P HELX_P6 6 LEU A 122 ? ARG A 126 ? LEU A 128 ARG A 132 5 ? 5 HELX_P HELX_P7 7 PRO A 129 ? ASN A 140 ? PRO A 135 ASN A 146 1 ? 12 HELX_P HELX_P8 8 ASN A 154 ? GLN A 172 ? ASN A 160 GLN A 178 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 19 OG ? ? ? 1_555 B MG . MG ? ? A SER 25 A MG 1175 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc2 metalc ? ? C GDP . O3B ? ? ? 1_555 B MG . MG ? ? A GDP 1174 A MG 1175 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1175 A HOH 1296 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1175 A HOH 1297 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1175 A HOH 1298 1_555 ? ? ? ? ? ? ? 2.140 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1175 A HOH 1299 1_555 ? ? ? ? ? ? ? 2.079 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 41 ? VAL A 49 ? GLU A 47 VAL A 55 A 2 LYS A 52 ? ASP A 60 ? LYS A 58 ASP A 66 A 3 TYR A 4 ? ILE A 11 ? TYR A 10 ILE A 17 A 4 GLY A 80 ? ASP A 86 ? GLY A 86 ASP A 92 A 5 VAL A 112 ? ASN A 118 ? VAL A 118 ASN A 124 A 6 SER A 143 ? GLU A 146 ? SER A 149 GLU A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 47 ? N ILE A 53 O ILE A 54 ? O ILE A 60 A 2 3 O LYS A 55 ? O LYS A 61 N TYR A 4 ? N TYR A 10 A 3 4 N ILE A 11 ? N ILE A 17 O VAL A 84 ? O VAL A 90 A 4 5 N TYR A 85 ? N TYR A 91 O ASN A 118 ? O ASN A 124 A 5 6 N LEU A 115 ? N LEU A 121 O SER A 143 ? O SER A 149 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 1175 ? 6 'BINDING SITE FOR RESIDUE MG A 1175' AC2 Software A GDP 1174 ? 25 'BINDING SITE FOR RESIDUE GDP A 1174' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 19 ? SER A 25 . ? 1_555 ? 2 AC1 6 GDP C . ? GDP A 1174 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 1296 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 1297 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 1298 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 1299 . ? 1_555 ? 7 AC2 25 GLY A 15 ? GLY A 21 . ? 1_555 ? 8 AC2 25 VAL A 16 ? VAL A 22 . ? 1_555 ? 9 AC2 25 GLY A 17 ? GLY A 23 . ? 1_555 ? 10 AC2 25 LYS A 18 ? LYS A 24 . ? 1_555 ? 11 AC2 25 SER A 19 ? SER A 25 . ? 1_555 ? 12 AC2 25 ASN A 20 ? ASN A 26 . ? 1_555 ? 13 AC2 25 PHE A 30 ? PHE A 36 . ? 1_555 ? 14 AC2 25 ASN A 31 ? ASN A 37 . ? 1_555 ? 15 AC2 25 LEU A 32 ? LEU A 38 . ? 1_555 ? 16 AC2 25 ASN A 118 ? ASN A 124 . ? 1_555 ? 17 AC2 25 LYS A 119 ? LYS A 125 . ? 1_555 ? 18 AC2 25 ASP A 121 ? ASP A 127 . ? 1_555 ? 19 AC2 25 SER A 148 ? SER A 154 . ? 1_555 ? 20 AC2 25 ALA A 149 ? ALA A 155 . ? 1_555 ? 21 AC2 25 LEU A 150 ? LEU A 156 . ? 1_555 ? 22 AC2 25 MG B . ? MG A 1175 . ? 1_555 ? 23 AC2 25 HOH D . ? HOH A 1190 . ? 1_555 ? 24 AC2 25 HOH D . ? HOH A 1201 . ? 3_545 ? 25 AC2 25 HOH D . ? HOH A 1216 . ? 3_545 ? 26 AC2 25 HOH D . ? HOH A 1222 . ? 3_545 ? 27 AC2 25 HOH D . ? HOH A 1240 . ? 1_555 ? 28 AC2 25 HOH D . ? HOH A 1241 . ? 1_555 ? 29 AC2 25 HOH D . ? HOH A 1296 . ? 1_555 ? 30 AC2 25 HOH D . ? HOH A 1298 . ? 1_555 ? 31 AC2 25 HOH D . ? HOH A 1299 . ? 1_555 ? # _database_PDB_matrix.entry_id 2F9L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2F9L _atom_sites.fract_transf_matrix[1][1] 0.021839 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019151 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016849 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 7 7 MET MET A . n A 1 2 TYR 2 8 8 TYR TYR A . n A 1 3 ASP 3 9 9 ASP ASP A . n A 1 4 TYR 4 10 10 TYR TYR A . n A 1 5 LEU 5 11 11 LEU LEU A . n A 1 6 PHE 6 12 12 PHE PHE A . n A 1 7 LYS 7 13 13 LYS LYS A . n A 1 8 VAL 8 14 14 VAL VAL A . n A 1 9 VAL 9 15 15 VAL VAL A . n A 1 10 LEU 10 16 16 LEU LEU A . n A 1 11 ILE 11 17 17 ILE ILE A . n A 1 12 GLY 12 18 18 GLY GLY A . n A 1 13 ASP 13 19 19 ASP ASP A . n A 1 14 SER 14 20 20 SER SER A . n A 1 15 GLY 15 21 21 GLY GLY A . n A 1 16 VAL 16 22 22 VAL VAL A . n A 1 17 GLY 17 23 23 GLY GLY A . n A 1 18 LYS 18 24 24 LYS LYS A . n A 1 19 SER 19 25 25 SER SER A . n A 1 20 ASN 20 26 26 ASN ASN A . n A 1 21 LEU 21 27 27 LEU LEU A . n A 1 22 LEU 22 28 28 LEU LEU A . n A 1 23 SER 23 29 29 SER SER A . n A 1 24 ARG 24 30 30 ARG ARG A . n A 1 25 PHE 25 31 31 PHE PHE A . n A 1 26 THR 26 32 32 THR THR A . n A 1 27 ARG 27 33 33 ARG ARG A . n A 1 28 ASN 28 34 34 ASN ASN A . n A 1 29 GLU 29 35 35 GLU GLU A . n A 1 30 PHE 30 36 36 PHE PHE A . n A 1 31 ASN 31 37 37 ASN ASN A . n A 1 32 LEU 32 38 38 LEU LEU A . n A 1 33 GLU 33 39 ? ? ? A . n A 1 34 SER 34 40 ? ? ? A . n A 1 35 LYS 35 41 ? ? ? A . n A 1 36 SER 36 42 42 SER SER A . n A 1 37 THR 37 43 43 THR THR A . n A 1 38 ILE 38 44 44 ILE ILE A . n A 1 39 GLY 39 45 45 GLY GLY A . n A 1 40 VAL 40 46 46 VAL VAL A . n A 1 41 GLU 41 47 47 GLU GLU A . n A 1 42 PHE 42 48 48 PHE PHE A . n A 1 43 ALA 43 49 49 ALA ALA A . n A 1 44 THR 44 50 50 THR THR A . n A 1 45 ARG 45 51 51 ARG ARG A . n A 1 46 SER 46 52 52 SER SER A . n A 1 47 ILE 47 53 53 ILE ILE A . n A 1 48 GLN 48 54 54 GLN GLN A . n A 1 49 VAL 49 55 55 VAL VAL A . n A 1 50 ASP 50 56 56 ASP ASP A . n A 1 51 GLY 51 57 57 GLY GLY A . n A 1 52 LYS 52 58 58 LYS LYS A . n A 1 53 THR 53 59 59 THR THR A . n A 1 54 ILE 54 60 60 ILE ILE A . n A 1 55 LYS 55 61 61 LYS LYS A . n A 1 56 ALA 56 62 62 ALA ALA A . n A 1 57 GLN 57 63 63 GLN GLN A . n A 1 58 ILE 58 64 64 ILE ILE A . n A 1 59 TRP 59 65 65 TRP TRP A . n A 1 60 ASP 60 66 66 ASP ASP A . n A 1 61 THR 61 67 67 THR THR A . n A 1 62 ALA 62 68 68 ALA ALA A . n A 1 63 GLY 63 69 69 GLY GLY A . n A 1 64 GLN 64 70 70 GLN GLN A . n A 1 65 GLU 65 71 71 GLU GLU A . n A 1 66 ARG 66 72 72 ARG ARG A . n A 1 67 TYR 67 73 73 TYR TYR A . n A 1 68 ARG 68 74 74 ARG ARG A . n A 1 69 ARG 69 75 75 ARG ALA A . n A 1 70 ILE 70 76 76 ILE ILE A . n A 1 71 THR 71 77 77 THR THR A . n A 1 72 SER 72 78 78 SER SER A . n A 1 73 ALA 73 79 79 ALA ALA A . n A 1 74 TYR 74 80 80 TYR TYR A . n A 1 75 TYR 75 81 81 TYR TYR A . n A 1 76 ARG 76 82 82 ARG ARG A . n A 1 77 GLY 77 83 83 GLY GLY A . n A 1 78 ALA 78 84 84 ALA ALA A . n A 1 79 VAL 79 85 85 VAL VAL A . n A 1 80 GLY 80 86 86 GLY GLY A . n A 1 81 ALA 81 87 87 ALA ALA A . n A 1 82 LEU 82 88 88 LEU LEU A . n A 1 83 LEU 83 89 89 LEU LEU A . n A 1 84 VAL 84 90 90 VAL VAL A . n A 1 85 TYR 85 91 91 TYR TYR A . n A 1 86 ASP 86 92 92 ASP ASP A . n A 1 87 ILE 87 93 93 ILE ILE A . n A 1 88 ALA 88 94 94 ALA ALA A . n A 1 89 LYS 89 95 95 LYS LYS A . n A 1 90 HIS 90 96 96 HIS HIS A . n A 1 91 LEU 91 97 97 LEU LEU A . n A 1 92 THR 92 98 98 THR THR A . n A 1 93 TYR 93 99 99 TYR TYR A . n A 1 94 GLU 94 100 100 GLU GLU A . n A 1 95 ASN 95 101 101 ASN ASN A . n A 1 96 VAL 96 102 102 VAL VAL A . n A 1 97 GLU 97 103 103 GLU GLU A . n A 1 98 ARG 98 104 104 ARG ARG A . n A 1 99 TRP 99 105 105 TRP TRP A . n A 1 100 LEU 100 106 106 LEU LEU A . n A 1 101 LYS 101 107 107 LYS LYS A . n A 1 102 GLU 102 108 108 GLU GLU A . n A 1 103 LEU 103 109 109 LEU LEU A . n A 1 104 ARG 104 110 110 ARG ARG A . n A 1 105 ASP 105 111 111 ASP ASP A . n A 1 106 HIS 106 112 112 HIS HIS A . n A 1 107 ALA 107 113 113 ALA ALA A . n A 1 108 ASP 108 114 114 ASP ASP A . n A 1 109 SER 109 115 115 SER SER A . n A 1 110 ASN 110 116 116 ASN ASN A . n A 1 111 ILE 111 117 117 ILE ILE A . n A 1 112 VAL 112 118 118 VAL VAL A . n A 1 113 ILE 113 119 119 ILE ILE A . n A 1 114 MET 114 120 120 MET MET A . n A 1 115 LEU 115 121 121 LEU LEU A . n A 1 116 VAL 116 122 122 VAL VAL A . n A 1 117 GLY 117 123 123 GLY GLY A . n A 1 118 ASN 118 124 124 ASN ASN A . n A 1 119 LYS 119 125 125 LYS LYS A . n A 1 120 SER 120 126 126 SER SER A . n A 1 121 ASP 121 127 127 ASP ASP A . n A 1 122 LEU 122 128 128 LEU LEU A . n A 1 123 ARG 123 129 129 ARG ARG A . n A 1 124 HIS 124 130 130 HIS HIS A . n A 1 125 LEU 125 131 131 LEU LEU A . n A 1 126 ARG 126 132 132 ARG ARG A . n A 1 127 ALA 127 133 133 ALA ALA A . n A 1 128 VAL 128 134 134 VAL VAL A . n A 1 129 PRO 129 135 135 PRO PRO A . n A 1 130 THR 130 136 136 THR THR A . n A 1 131 ASP 131 137 137 ASP ASP A . n A 1 132 GLU 132 138 138 GLU GLU A . n A 1 133 ALA 133 139 139 ALA ALA A . n A 1 134 ARG 134 140 140 ARG ARG A . n A 1 135 ALA 135 141 141 ALA ALA A . n A 1 136 PHE 136 142 142 PHE PHE A . n A 1 137 ALA 137 143 143 ALA ALA A . n A 1 138 GLU 138 144 144 GLU GLU A . n A 1 139 LYS 139 145 145 LYS LYS A . n A 1 140 ASN 140 146 146 ASN ASN A . n A 1 141 ASN 141 147 147 ASN ASN A . n A 1 142 LEU 142 148 148 LEU LEU A . n A 1 143 SER 143 149 149 SER SER A . n A 1 144 PHE 144 150 150 PHE PHE A . n A 1 145 ILE 145 151 151 ILE ILE A . n A 1 146 GLU 146 152 152 GLU GLU A . n A 1 147 THR 147 153 153 THR THR A . n A 1 148 SER 148 154 154 SER SER A . n A 1 149 ALA 149 155 155 ALA ALA A . n A 1 150 LEU 150 156 156 LEU LEU A . n A 1 151 ASP 151 157 157 ASP ASP A . n A 1 152 SER 152 158 158 SER SER A . n A 1 153 THR 153 159 159 THR THR A . n A 1 154 ASN 154 160 160 ASN ASN A . n A 1 155 VAL 155 161 161 VAL VAL A . n A 1 156 GLU 156 162 162 GLU GLU A . n A 1 157 GLU 157 163 163 GLU GLU A . n A 1 158 ALA 158 164 164 ALA ALA A . n A 1 159 PHE 159 165 165 PHE PHE A . n A 1 160 LYS 160 166 166 LYS LYS A . n A 1 161 ASN 161 167 167 ASN ASN A . n A 1 162 ILE 162 168 168 ILE ILE A . n A 1 163 LEU 163 169 169 LEU LEU A . n A 1 164 THR 164 170 170 THR THR A . n A 1 165 GLU 165 171 171 GLU GLU A . n A 1 166 ILE 166 172 172 ILE ILE A . n A 1 167 TYR 167 173 173 TYR TYR A . n A 1 168 ARG 168 174 174 ARG ARG A . n A 1 169 ILE 169 175 175 ILE ILE A . n A 1 170 VAL 170 176 176 VAL VAL A . n A 1 171 SER 171 177 177 SER SER A . n A 1 172 GLN 172 178 178 GLN GLN A . n A 1 173 LYS 173 179 179 LYS LYS A . n A 1 174 GLN 174 180 180 GLN GLN A . n A 1 175 ILE 175 181 181 ILE ILE A . n A 1 176 ALA 176 182 182 ALA ALA A . n A 1 177 ASP 177 183 ? ? ? A . n A 1 178 ARG 178 184 ? ? ? A . n A 1 179 ALA 179 185 ? ? ? A . n A 1 180 ALA 180 186 ? ? ? A . n A 1 181 HIS 181 187 ? ? ? A . n A 1 182 ASP 182 188 ? ? ? A . n A 1 183 GLU 183 189 ? ? ? A . n A 1 184 SER 184 190 ? ? ? A . n A 1 185 PRO 185 191 ? ? ? A . n A 1 186 GLY 186 192 ? ? ? A . n A 1 187 ASN 187 193 ? ? ? A . n A 1 188 ASN 188 194 ? ? ? A . n A 1 189 VAL 189 195 ? ? ? A . n A 1 190 VAL 190 196 ? ? ? A . n A 1 191 ASP 191 197 ? ? ? A . n A 1 192 ILE 192 198 ? ? ? A . n A 1 193 SER 193 199 ? ? ? A . n A 1 194 VAL 194 200 ? ? ? A . n A 1 195 PRO 195 201 ? ? ? A . n A 1 196 PRO 196 202 ? ? ? A . n A 1 197 THR 197 203 ? ? ? A . n A 1 198 THR 198 204 ? ? ? A . n A 1 199 ASP 199 205 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 1175 1175 MG MG A . C 3 GDP 1 1174 1174 GDP GDP A . D 4 HOH 1 1176 1 HOH HOH A . D 4 HOH 2 1177 2 HOH HOH A . D 4 HOH 3 1178 3 HOH HOH A . D 4 HOH 4 1179 4 HOH HOH A . D 4 HOH 5 1180 5 HOH HOH A . D 4 HOH 6 1181 6 HOH HOH A . D 4 HOH 7 1182 7 HOH HOH A . D 4 HOH 8 1183 8 HOH HOH A . D 4 HOH 9 1184 9 HOH HOH A . D 4 HOH 10 1185 10 HOH HOH A . D 4 HOH 11 1186 11 HOH HOH A . D 4 HOH 12 1187 12 HOH HOH A . D 4 HOH 13 1188 13 HOH HOH A . D 4 HOH 14 1189 14 HOH HOH A . D 4 HOH 15 1190 15 HOH HOH A . D 4 HOH 16 1191 16 HOH HOH A . D 4 HOH 17 1192 17 HOH HOH A . D 4 HOH 18 1193 18 HOH HOH A . D 4 HOH 19 1194 19 HOH HOH A . D 4 HOH 20 1195 20 HOH HOH A . D 4 HOH 21 1196 21 HOH HOH A . D 4 HOH 22 1197 22 HOH HOH A . D 4 HOH 23 1198 23 HOH HOH A . D 4 HOH 24 1199 24 HOH HOH A . D 4 HOH 25 1200 25 HOH HOH A . D 4 HOH 26 1201 26 HOH HOH A . D 4 HOH 27 1202 27 HOH HOH A . D 4 HOH 28 1203 28 HOH HOH A . D 4 HOH 29 1204 29 HOH HOH A . D 4 HOH 30 1205 30 HOH HOH A . D 4 HOH 31 1206 31 HOH HOH A . D 4 HOH 32 1207 32 HOH HOH A . D 4 HOH 33 1208 33 HOH HOH A . D 4 HOH 34 1209 34 HOH HOH A . D 4 HOH 35 1210 35 HOH HOH A . D 4 HOH 36 1211 36 HOH HOH A . D 4 HOH 37 1212 37 HOH HOH A . D 4 HOH 38 1213 38 HOH HOH A . D 4 HOH 39 1214 39 HOH HOH A . D 4 HOH 40 1215 40 HOH HOH A . D 4 HOH 41 1216 41 HOH HOH A . D 4 HOH 42 1217 42 HOH HOH A . D 4 HOH 43 1218 43 HOH HOH A . D 4 HOH 44 1219 44 HOH HOH A . D 4 HOH 45 1220 45 HOH HOH A . D 4 HOH 46 1221 46 HOH HOH A . D 4 HOH 47 1222 47 HOH HOH A . D 4 HOH 48 1223 48 HOH HOH A . D 4 HOH 49 1224 49 HOH HOH A . D 4 HOH 50 1225 50 HOH HOH A . D 4 HOH 51 1226 51 HOH HOH A . D 4 HOH 52 1227 52 HOH HOH A . D 4 HOH 53 1228 53 HOH HOH A . D 4 HOH 54 1229 54 HOH HOH A . D 4 HOH 55 1230 55 HOH HOH A . D 4 HOH 56 1231 56 HOH HOH A . D 4 HOH 57 1232 57 HOH HOH A . D 4 HOH 58 1233 58 HOH HOH A . D 4 HOH 59 1234 59 HOH HOH A . D 4 HOH 60 1235 60 HOH HOH A . D 4 HOH 61 1236 61 HOH HOH A . D 4 HOH 62 1237 62 HOH HOH A . D 4 HOH 63 1238 63 HOH HOH A . D 4 HOH 64 1239 64 HOH HOH A . D 4 HOH 65 1240 65 HOH HOH A . D 4 HOH 66 1241 66 HOH HOH A . D 4 HOH 67 1242 67 HOH HOH A . D 4 HOH 68 1243 68 HOH HOH A . D 4 HOH 69 1244 69 HOH HOH A . D 4 HOH 70 1245 70 HOH HOH A . D 4 HOH 71 1246 71 HOH HOH A . D 4 HOH 72 1247 72 HOH HOH A . D 4 HOH 73 1248 73 HOH HOH A . D 4 HOH 74 1249 74 HOH HOH A . D 4 HOH 75 1250 75 HOH HOH A . D 4 HOH 76 1251 76 HOH HOH A . D 4 HOH 77 1252 77 HOH HOH A . D 4 HOH 78 1253 78 HOH HOH A . D 4 HOH 79 1254 79 HOH HOH A . D 4 HOH 80 1255 80 HOH HOH A . D 4 HOH 81 1256 81 HOH HOH A . D 4 HOH 82 1257 82 HOH HOH A . D 4 HOH 83 1258 83 HOH HOH A . D 4 HOH 84 1259 84 HOH HOH A . D 4 HOH 85 1260 85 HOH HOH A . D 4 HOH 86 1261 86 HOH HOH A . D 4 HOH 87 1262 87 HOH HOH A . D 4 HOH 88 1263 88 HOH HOH A . D 4 HOH 89 1264 89 HOH HOH A . D 4 HOH 90 1265 90 HOH HOH A . D 4 HOH 91 1266 91 HOH HOH A . D 4 HOH 92 1267 92 HOH HOH A . D 4 HOH 93 1268 93 HOH HOH A . D 4 HOH 94 1269 94 HOH HOH A . D 4 HOH 95 1270 95 HOH HOH A . D 4 HOH 96 1271 96 HOH HOH A . D 4 HOH 97 1272 97 HOH HOH A . D 4 HOH 98 1273 98 HOH HOH A . D 4 HOH 99 1274 99 HOH HOH A . D 4 HOH 100 1275 100 HOH HOH A . D 4 HOH 101 1276 101 HOH HOH A . D 4 HOH 102 1277 102 HOH HOH A . D 4 HOH 103 1278 103 HOH HOH A . D 4 HOH 104 1279 104 HOH HOH A . D 4 HOH 105 1280 105 HOH HOH A . D 4 HOH 106 1281 106 HOH HOH A . D 4 HOH 107 1282 107 HOH HOH A . D 4 HOH 108 1283 108 HOH HOH A . D 4 HOH 109 1284 109 HOH HOH A . D 4 HOH 110 1285 110 HOH HOH A . D 4 HOH 111 1286 111 HOH HOH A . D 4 HOH 112 1287 112 HOH HOH A . D 4 HOH 113 1288 113 HOH HOH A . D 4 HOH 114 1289 114 HOH HOH A . D 4 HOH 115 1290 115 HOH HOH A . D 4 HOH 116 1291 116 HOH HOH A . D 4 HOH 117 1292 117 HOH HOH A . D 4 HOH 118 1293 118 HOH HOH A . D 4 HOH 119 1294 119 HOH HOH A . D 4 HOH 120 1295 120 HOH HOH A . D 4 HOH 121 1296 121 HOH HOH A . D 4 HOH 122 1297 122 HOH HOH A . D 4 HOH 123 1298 123 HOH HOH A . D 4 HOH 124 1299 124 HOH HOH A . D 4 HOH 125 1300 125 HOH HOH A . D 4 HOH 126 1301 126 HOH HOH A . D 4 HOH 127 1302 127 HOH HOH A . D 4 HOH 128 1303 128 HOH HOH A . D 4 HOH 129 1304 129 HOH HOH A . D 4 HOH 130 1305 130 HOH HOH A . D 4 HOH 131 1306 131 HOH HOH A . D 4 HOH 132 1307 132 HOH HOH A . D 4 HOH 133 1308 133 HOH HOH A . D 4 HOH 134 1309 134 HOH HOH A . D 4 HOH 135 1310 135 HOH HOH A . D 4 HOH 136 1311 136 HOH HOH A . D 4 HOH 137 1312 137 HOH HOH A . D 4 HOH 138 1313 138 HOH HOH A . D 4 HOH 139 1314 139 HOH HOH A . D 4 HOH 140 1315 140 HOH HOH A . D 4 HOH 141 1316 141 HOH HOH A . D 4 HOH 142 1317 142 HOH HOH A . D 4 HOH 143 1318 143 HOH HOH A . D 4 HOH 144 1319 144 HOH HOH A . D 4 HOH 145 1320 145 HOH HOH A . D 4 HOH 146 1321 146 HOH HOH A . D 4 HOH 147 1322 147 HOH HOH A . D 4 HOH 148 1323 148 HOH HOH A . D 4 HOH 149 1324 149 HOH HOH A . D 4 HOH 150 1325 150 HOH HOH A . D 4 HOH 151 1326 151 HOH HOH A . D 4 HOH 152 1327 152 HOH HOH A . D 4 HOH 153 1328 153 HOH HOH A . D 4 HOH 154 1329 154 HOH HOH A . D 4 HOH 155 1330 155 HOH HOH A . D 4 HOH 156 1331 156 HOH HOH A . D 4 HOH 157 1332 157 HOH HOH A . D 4 HOH 158 1333 158 HOH HOH A . D 4 HOH 159 1334 159 HOH HOH A . D 4 HOH 160 1335 160 HOH HOH A . D 4 HOH 161 1336 161 HOH HOH A . D 4 HOH 162 1337 162 HOH HOH A . D 4 HOH 163 1338 163 HOH HOH A . D 4 HOH 164 1339 164 HOH HOH A . D 4 HOH 165 1340 165 HOH HOH A . D 4 HOH 166 1341 166 HOH HOH A . D 4 HOH 167 1342 167 HOH HOH A . D 4 HOH 168 1343 168 HOH HOH A . D 4 HOH 169 1344 169 HOH HOH A . D 4 HOH 170 1345 170 HOH HOH A . D 4 HOH 171 1346 171 HOH HOH A . D 4 HOH 172 1347 172 HOH HOH A . D 4 HOH 173 1348 173 HOH HOH A . D 4 HOH 174 1349 174 HOH HOH A . D 4 HOH 175 1350 175 HOH HOH A . D 4 HOH 176 1351 176 HOH HOH A . D 4 HOH 177 1352 177 HOH HOH A . D 4 HOH 178 1353 178 HOH HOH A . D 4 HOH 179 1354 179 HOH HOH A . D 4 HOH 180 1355 180 HOH HOH A . D 4 HOH 181 1356 181 HOH HOH A . D 4 HOH 182 1357 182 HOH HOH A . D 4 HOH 183 1358 183 HOH HOH A . D 4 HOH 184 1359 184 HOH HOH A . D 4 HOH 185 1360 185 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 19 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O3B ? C GDP . ? A GDP 1174 ? 1_555 87.7 ? 2 OG ? A SER 19 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1296 ? 1_555 93.9 ? 3 O3B ? C GDP . ? A GDP 1174 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1296 ? 1_555 89.8 ? 4 OG ? A SER 19 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1297 ? 1_555 85.7 ? 5 O3B ? C GDP . ? A GDP 1174 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1297 ? 1_555 173.2 ? 6 O ? D HOH . ? A HOH 1296 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1297 ? 1_555 89.1 ? 7 OG ? A SER 19 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1298 ? 1_555 88.2 ? 8 O3B ? C GDP . ? A GDP 1174 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1298 ? 1_555 93.1 ? 9 O ? D HOH . ? A HOH 1296 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1298 ? 1_555 176.5 ? 10 O ? D HOH . ? A HOH 1297 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1298 ? 1_555 88.3 ? 11 OG ? A SER 19 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1299 ? 1_555 174.5 ? 12 O3B ? C GDP . ? A GDP 1174 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1299 ? 1_555 92.3 ? 13 O ? D HOH . ? A HOH 1296 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1299 ? 1_555 91.6 ? 14 O ? D HOH . ? A HOH 1297 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1299 ? 1_555 94.4 ? 15 O ? D HOH . ? A HOH 1298 ? 1_555 MG ? B MG . ? A MG 1175 ? 1_555 O ? D HOH . ? A HOH 1299 ? 1_555 86.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-04-04 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.value' 18 5 'Structure model' '_struct_conn.pdbx_dist_value' 19 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 5 'Structure model' '_struct_ref_seq_dif.details' 32 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MAR345 'data collection' . ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 AMoRE phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C A ASP 114 ? ? O A HOH 1357 ? ? 2.00 2 1 O A HOH 1328 ? ? O A HOH 1353 ? ? 2.13 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CB A ARG 82 ? ? 1_555 O A HOH 1358 ? ? 4_556 2.04 2 1 O A HOH 1328 ? ? 1_555 O A HOH 1355 ? ? 4_555 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 120 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 120 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 120 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 83.71 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation -16.49 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 74 ? ? 79.58 32.70 2 1 LEU A 109 ? ? -64.26 -80.29 3 1 ARG A 110 ? ? -26.95 -43.58 4 1 ASP A 111 ? ? -68.39 -75.49 5 1 SER A 115 ? ? -31.42 -35.21 6 1 LYS A 125 ? ? 72.49 37.29 7 1 SER A 158 ? ? 74.68 -3.05 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 7 ? CB ? A MET 1 CB 2 1 Y 1 A MET 7 ? CG ? A MET 1 CG 3 1 Y 1 A MET 7 ? SD ? A MET 1 SD 4 1 Y 1 A MET 7 ? CE ? A MET 1 CE 5 1 Y 1 A SER 42 ? OG ? A SER 36 OG 6 1 Y 1 A ARG 74 ? CB ? A ARG 68 CB 7 1 Y 1 A ARG 74 ? CG ? A ARG 68 CG 8 1 Y 1 A ARG 74 ? CD ? A ARG 68 CD 9 1 Y 1 A ARG 74 ? NE ? A ARG 68 NE 10 1 Y 1 A ARG 74 ? CZ ? A ARG 68 CZ 11 1 Y 1 A ARG 74 ? NH1 ? A ARG 68 NH1 12 1 Y 1 A ARG 74 ? NH2 ? A ARG 68 NH2 13 1 Y 1 A ARG 75 ? CG ? A ARG 69 CG 14 1 Y 1 A ARG 75 ? CD ? A ARG 69 CD 15 1 Y 1 A ARG 75 ? NE ? A ARG 69 NE 16 1 Y 1 A ARG 75 ? CZ ? A ARG 69 CZ 17 1 Y 1 A ARG 75 ? NH1 ? A ARG 69 NH1 18 1 Y 1 A ARG 75 ? NH2 ? A ARG 69 NH2 19 1 Y 1 A ARG 82 ? CG ? A ARG 76 CG 20 1 Y 1 A ARG 82 ? CD ? A ARG 76 CD 21 1 Y 1 A ARG 82 ? NE ? A ARG 76 NE 22 1 Y 1 A ARG 82 ? CZ ? A ARG 76 CZ 23 1 Y 1 A ARG 82 ? NH1 ? A ARG 76 NH1 24 1 Y 1 A ARG 82 ? NH2 ? A ARG 76 NH2 25 1 Y 1 A ARG 104 ? CG ? A ARG 98 CG 26 1 Y 1 A ARG 104 ? CD ? A ARG 98 CD 27 1 Y 1 A ARG 104 ? NE ? A ARG 98 NE 28 1 Y 1 A ARG 104 ? CZ ? A ARG 98 CZ 29 1 Y 1 A ARG 104 ? NH1 ? A ARG 98 NH1 30 1 Y 1 A ARG 104 ? NH2 ? A ARG 98 NH2 31 1 Y 1 A LYS 107 ? CG ? A LYS 101 CG 32 1 Y 1 A LYS 107 ? CD ? A LYS 101 CD 33 1 Y 1 A LYS 107 ? CE ? A LYS 101 CE 34 1 Y 1 A LYS 107 ? NZ ? A LYS 101 NZ 35 1 Y 1 A ARG 110 ? CG ? A ARG 104 CG 36 1 Y 1 A ARG 110 ? CD ? A ARG 104 CD 37 1 Y 1 A ARG 110 ? NE ? A ARG 104 NE 38 1 Y 1 A ARG 110 ? CZ ? A ARG 104 CZ 39 1 Y 1 A ARG 110 ? NH1 ? A ARG 104 NH1 40 1 Y 1 A ARG 110 ? NH2 ? A ARG 104 NH2 41 1 Y 1 A HIS 112 ? CG ? A HIS 106 CG 42 1 Y 1 A HIS 112 ? ND1 ? A HIS 106 ND1 43 1 Y 1 A HIS 112 ? CD2 ? A HIS 106 CD2 44 1 Y 1 A HIS 112 ? CE1 ? A HIS 106 CE1 45 1 Y 1 A HIS 112 ? NE2 ? A HIS 106 NE2 46 1 Y 1 A SER 115 ? OG ? A SER 109 OG 47 1 Y 1 A LYS 145 ? CG ? A LYS 139 CG 48 1 Y 1 A LYS 145 ? CD ? A LYS 139 CD 49 1 Y 1 A LYS 145 ? CE ? A LYS 139 CE 50 1 Y 1 A LYS 145 ? NZ ? A LYS 139 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 39 ? A GLU 33 2 1 Y 1 A SER 40 ? A SER 34 3 1 Y 1 A LYS 41 ? A LYS 35 4 1 Y 1 A ASP 183 ? A ASP 177 5 1 Y 1 A ARG 184 ? A ARG 178 6 1 Y 1 A ALA 185 ? A ALA 179 7 1 Y 1 A ALA 186 ? A ALA 180 8 1 Y 1 A HIS 187 ? A HIS 181 9 1 Y 1 A ASP 188 ? A ASP 182 10 1 Y 1 A GLU 189 ? A GLU 183 11 1 Y 1 A SER 190 ? A SER 184 12 1 Y 1 A PRO 191 ? A PRO 185 13 1 Y 1 A GLY 192 ? A GLY 186 14 1 Y 1 A ASN 193 ? A ASN 187 15 1 Y 1 A ASN 194 ? A ASN 188 16 1 Y 1 A VAL 195 ? A VAL 189 17 1 Y 1 A VAL 196 ? A VAL 190 18 1 Y 1 A ASP 197 ? A ASP 191 19 1 Y 1 A ILE 198 ? A ILE 192 20 1 Y 1 A SER 199 ? A SER 193 21 1 Y 1 A VAL 200 ? A VAL 194 22 1 Y 1 A PRO 201 ? A PRO 195 23 1 Y 1 A PRO 202 ? A PRO 196 24 1 Y 1 A THR 203 ? A THR 197 25 1 Y 1 A THR 204 ? A THR 198 26 1 Y 1 A ASP 205 ? A ASP 199 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GDP PB P N N 74 GDP O1B O N N 75 GDP O2B O N N 76 GDP O3B O N N 77 GDP O3A O N N 78 GDP PA P N N 79 GDP O1A O N N 80 GDP O2A O N N 81 GDP "O5'" O N N 82 GDP "C5'" C N N 83 GDP "C4'" C N R 84 GDP "O4'" O N N 85 GDP "C3'" C N S 86 GDP "O3'" O N N 87 GDP "C2'" C N R 88 GDP "O2'" O N N 89 GDP "C1'" C N R 90 GDP N9 N Y N 91 GDP C8 C Y N 92 GDP N7 N Y N 93 GDP C5 C Y N 94 GDP C6 C N N 95 GDP O6 O N N 96 GDP N1 N N N 97 GDP C2 C N N 98 GDP N2 N N N 99 GDP N3 N N N 100 GDP C4 C Y N 101 GDP HOB2 H N N 102 GDP HOB3 H N N 103 GDP HOA2 H N N 104 GDP "H5'" H N N 105 GDP "H5''" H N N 106 GDP "H4'" H N N 107 GDP "H3'" H N N 108 GDP "HO3'" H N N 109 GDP "H2'" H N N 110 GDP "HO2'" H N N 111 GDP "H1'" H N N 112 GDP H8 H N N 113 GDP HN1 H N N 114 GDP HN21 H N N 115 GDP HN22 H N N 116 GLN N N N N 117 GLN CA C N S 118 GLN C C N N 119 GLN O O N N 120 GLN CB C N N 121 GLN CG C N N 122 GLN CD C N N 123 GLN OE1 O N N 124 GLN NE2 N N N 125 GLN OXT O N N 126 GLN H H N N 127 GLN H2 H N N 128 GLN HA H N N 129 GLN HB2 H N N 130 GLN HB3 H N N 131 GLN HG2 H N N 132 GLN HG3 H N N 133 GLN HE21 H N N 134 GLN HE22 H N N 135 GLN HXT H N N 136 GLU N N N N 137 GLU CA C N S 138 GLU C C N N 139 GLU O O N N 140 GLU CB C N N 141 GLU CG C N N 142 GLU CD C N N 143 GLU OE1 O N N 144 GLU OE2 O N N 145 GLU OXT O N N 146 GLU H H N N 147 GLU H2 H N N 148 GLU HA H N N 149 GLU HB2 H N N 150 GLU HB3 H N N 151 GLU HG2 H N N 152 GLU HG3 H N N 153 GLU HE2 H N N 154 GLU HXT H N N 155 GLY N N N N 156 GLY CA C N N 157 GLY C C N N 158 GLY O O N N 159 GLY OXT O N N 160 GLY H H N N 161 GLY H2 H N N 162 GLY HA2 H N N 163 GLY HA3 H N N 164 GLY HXT H N N 165 HIS N N N N 166 HIS CA C N S 167 HIS C C N N 168 HIS O O N N 169 HIS CB C N N 170 HIS CG C Y N 171 HIS ND1 N Y N 172 HIS CD2 C Y N 173 HIS CE1 C Y N 174 HIS NE2 N Y N 175 HIS OXT O N N 176 HIS H H N N 177 HIS H2 H N N 178 HIS HA H N N 179 HIS HB2 H N N 180 HIS HB3 H N N 181 HIS HD1 H N N 182 HIS HD2 H N N 183 HIS HE1 H N N 184 HIS HE2 H N N 185 HIS HXT H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 ILE N N N N 190 ILE CA C N S 191 ILE C C N N 192 ILE O O N N 193 ILE CB C N S 194 ILE CG1 C N N 195 ILE CG2 C N N 196 ILE CD1 C N N 197 ILE OXT O N N 198 ILE H H N N 199 ILE H2 H N N 200 ILE HA H N N 201 ILE HB H N N 202 ILE HG12 H N N 203 ILE HG13 H N N 204 ILE HG21 H N N 205 ILE HG22 H N N 206 ILE HG23 H N N 207 ILE HD11 H N N 208 ILE HD12 H N N 209 ILE HD13 H N N 210 ILE HXT H N N 211 LEU N N N N 212 LEU CA C N S 213 LEU C C N N 214 LEU O O N N 215 LEU CB C N N 216 LEU CG C N N 217 LEU CD1 C N N 218 LEU CD2 C N N 219 LEU OXT O N N 220 LEU H H N N 221 LEU H2 H N N 222 LEU HA H N N 223 LEU HB2 H N N 224 LEU HB3 H N N 225 LEU HG H N N 226 LEU HD11 H N N 227 LEU HD12 H N N 228 LEU HD13 H N N 229 LEU HD21 H N N 230 LEU HD22 H N N 231 LEU HD23 H N N 232 LEU HXT H N N 233 LYS N N N N 234 LYS CA C N S 235 LYS C C N N 236 LYS O O N N 237 LYS CB C N N 238 LYS CG C N N 239 LYS CD C N N 240 LYS CE C N N 241 LYS NZ N N N 242 LYS OXT O N N 243 LYS H H N N 244 LYS H2 H N N 245 LYS HA H N N 246 LYS HB2 H N N 247 LYS HB3 H N N 248 LYS HG2 H N N 249 LYS HG3 H N N 250 LYS HD2 H N N 251 LYS HD3 H N N 252 LYS HE2 H N N 253 LYS HE3 H N N 254 LYS HZ1 H N N 255 LYS HZ2 H N N 256 LYS HZ3 H N N 257 LYS HXT H N N 258 MET N N N N 259 MET CA C N S 260 MET C C N N 261 MET O O N N 262 MET CB C N N 263 MET CG C N N 264 MET SD S N N 265 MET CE C N N 266 MET OXT O N N 267 MET H H N N 268 MET H2 H N N 269 MET HA H N N 270 MET HB2 H N N 271 MET HB3 H N N 272 MET HG2 H N N 273 MET HG3 H N N 274 MET HE1 H N N 275 MET HE2 H N N 276 MET HE3 H N N 277 MET HXT H N N 278 MG MG MG N N 279 PHE N N N N 280 PHE CA C N S 281 PHE C C N N 282 PHE O O N N 283 PHE CB C N N 284 PHE CG C Y N 285 PHE CD1 C Y N 286 PHE CD2 C Y N 287 PHE CE1 C Y N 288 PHE CE2 C Y N 289 PHE CZ C Y N 290 PHE OXT O N N 291 PHE H H N N 292 PHE H2 H N N 293 PHE HA H N N 294 PHE HB2 H N N 295 PHE HB3 H N N 296 PHE HD1 H N N 297 PHE HD2 H N N 298 PHE HE1 H N N 299 PHE HE2 H N N 300 PHE HZ H N N 301 PHE HXT H N N 302 PRO N N N N 303 PRO CA C N S 304 PRO C C N N 305 PRO O O N N 306 PRO CB C N N 307 PRO CG C N N 308 PRO CD C N N 309 PRO OXT O N N 310 PRO H H N N 311 PRO HA H N N 312 PRO HB2 H N N 313 PRO HB3 H N N 314 PRO HG2 H N N 315 PRO HG3 H N N 316 PRO HD2 H N N 317 PRO HD3 H N N 318 PRO HXT H N N 319 SER N N N N 320 SER CA C N S 321 SER C C N N 322 SER O O N N 323 SER CB C N N 324 SER OG O N N 325 SER OXT O N N 326 SER H H N N 327 SER H2 H N N 328 SER HA H N N 329 SER HB2 H N N 330 SER HB3 H N N 331 SER HG H N N 332 SER HXT H N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TRP N N N N 351 TRP CA C N S 352 TRP C C N N 353 TRP O O N N 354 TRP CB C N N 355 TRP CG C Y N 356 TRP CD1 C Y N 357 TRP CD2 C Y N 358 TRP NE1 N Y N 359 TRP CE2 C Y N 360 TRP CE3 C Y N 361 TRP CZ2 C Y N 362 TRP CZ3 C Y N 363 TRP CH2 C Y N 364 TRP OXT O N N 365 TRP H H N N 366 TRP H2 H N N 367 TRP HA H N N 368 TRP HB2 H N N 369 TRP HB3 H N N 370 TRP HD1 H N N 371 TRP HE1 H N N 372 TRP HE3 H N N 373 TRP HZ2 H N N 374 TRP HZ3 H N N 375 TRP HH2 H N N 376 TRP HXT H N N 377 TYR N N N N 378 TYR CA C N S 379 TYR C C N N 380 TYR O O N N 381 TYR CB C N N 382 TYR CG C Y N 383 TYR CD1 C Y N 384 TYR CD2 C Y N 385 TYR CE1 C Y N 386 TYR CE2 C Y N 387 TYR CZ C Y N 388 TYR OH O N N 389 TYR OXT O N N 390 TYR H H N N 391 TYR H2 H N N 392 TYR HA H N N 393 TYR HB2 H N N 394 TYR HB3 H N N 395 TYR HD1 H N N 396 TYR HD2 H N N 397 TYR HE1 H N N 398 TYR HE2 H N N 399 TYR HH H N N 400 TYR HXT H N N 401 VAL N N N N 402 VAL CA C N S 403 VAL C C N N 404 VAL O O N N 405 VAL CB C N N 406 VAL CG1 C N N 407 VAL CG2 C N N 408 VAL OXT O N N 409 VAL H H N N 410 VAL H2 H N N 411 VAL HA H N N 412 VAL HB H N N 413 VAL HG11 H N N 414 VAL HG12 H N N 415 VAL HG13 H N N 416 VAL HG21 H N N 417 VAL HG22 H N N 418 VAL HG23 H N N 419 VAL HXT H N N 420 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GDP PB O1B doub N N 70 GDP PB O2B sing N N 71 GDP PB O3B sing N N 72 GDP PB O3A sing N N 73 GDP O2B HOB2 sing N N 74 GDP O3B HOB3 sing N N 75 GDP O3A PA sing N N 76 GDP PA O1A doub N N 77 GDP PA O2A sing N N 78 GDP PA "O5'" sing N N 79 GDP O2A HOA2 sing N N 80 GDP "O5'" "C5'" sing N N 81 GDP "C5'" "C4'" sing N N 82 GDP "C5'" "H5'" sing N N 83 GDP "C5'" "H5''" sing N N 84 GDP "C4'" "O4'" sing N N 85 GDP "C4'" "C3'" sing N N 86 GDP "C4'" "H4'" sing N N 87 GDP "O4'" "C1'" sing N N 88 GDP "C3'" "O3'" sing N N 89 GDP "C3'" "C2'" sing N N 90 GDP "C3'" "H3'" sing N N 91 GDP "O3'" "HO3'" sing N N 92 GDP "C2'" "O2'" sing N N 93 GDP "C2'" "C1'" sing N N 94 GDP "C2'" "H2'" sing N N 95 GDP "O2'" "HO2'" sing N N 96 GDP "C1'" N9 sing N N 97 GDP "C1'" "H1'" sing N N 98 GDP N9 C8 sing Y N 99 GDP N9 C4 sing Y N 100 GDP C8 N7 doub Y N 101 GDP C8 H8 sing N N 102 GDP N7 C5 sing Y N 103 GDP C5 C6 sing N N 104 GDP C5 C4 doub Y N 105 GDP C6 O6 doub N N 106 GDP C6 N1 sing N N 107 GDP N1 C2 sing N N 108 GDP N1 HN1 sing N N 109 GDP C2 N2 sing N N 110 GDP C2 N3 doub N N 111 GDP N2 HN21 sing N N 112 GDP N2 HN22 sing N N 113 GDP N3 C4 sing N N 114 GLN N CA sing N N 115 GLN N H sing N N 116 GLN N H2 sing N N 117 GLN CA C sing N N 118 GLN CA CB sing N N 119 GLN CA HA sing N N 120 GLN C O doub N N 121 GLN C OXT sing N N 122 GLN CB CG sing N N 123 GLN CB HB2 sing N N 124 GLN CB HB3 sing N N 125 GLN CG CD sing N N 126 GLN CG HG2 sing N N 127 GLN CG HG3 sing N N 128 GLN CD OE1 doub N N 129 GLN CD NE2 sing N N 130 GLN NE2 HE21 sing N N 131 GLN NE2 HE22 sing N N 132 GLN OXT HXT sing N N 133 GLU N CA sing N N 134 GLU N H sing N N 135 GLU N H2 sing N N 136 GLU CA C sing N N 137 GLU CA CB sing N N 138 GLU CA HA sing N N 139 GLU C O doub N N 140 GLU C OXT sing N N 141 GLU CB CG sing N N 142 GLU CB HB2 sing N N 143 GLU CB HB3 sing N N 144 GLU CG CD sing N N 145 GLU CG HG2 sing N N 146 GLU CG HG3 sing N N 147 GLU CD OE1 doub N N 148 GLU CD OE2 sing N N 149 GLU OE2 HE2 sing N N 150 GLU OXT HXT sing N N 151 GLY N CA sing N N 152 GLY N H sing N N 153 GLY N H2 sing N N 154 GLY CA C sing N N 155 GLY CA HA2 sing N N 156 GLY CA HA3 sing N N 157 GLY C O doub N N 158 GLY C OXT sing N N 159 GLY OXT HXT sing N N 160 HIS N CA sing N N 161 HIS N H sing N N 162 HIS N H2 sing N N 163 HIS CA C sing N N 164 HIS CA CB sing N N 165 HIS CA HA sing N N 166 HIS C O doub N N 167 HIS C OXT sing N N 168 HIS CB CG sing N N 169 HIS CB HB2 sing N N 170 HIS CB HB3 sing N N 171 HIS CG ND1 sing Y N 172 HIS CG CD2 doub Y N 173 HIS ND1 CE1 doub Y N 174 HIS ND1 HD1 sing N N 175 HIS CD2 NE2 sing Y N 176 HIS CD2 HD2 sing N N 177 HIS CE1 NE2 sing Y N 178 HIS CE1 HE1 sing N N 179 HIS NE2 HE2 sing N N 180 HIS OXT HXT sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 ILE N CA sing N N 184 ILE N H sing N N 185 ILE N H2 sing N N 186 ILE CA C sing N N 187 ILE CA CB sing N N 188 ILE CA HA sing N N 189 ILE C O doub N N 190 ILE C OXT sing N N 191 ILE CB CG1 sing N N 192 ILE CB CG2 sing N N 193 ILE CB HB sing N N 194 ILE CG1 CD1 sing N N 195 ILE CG1 HG12 sing N N 196 ILE CG1 HG13 sing N N 197 ILE CG2 HG21 sing N N 198 ILE CG2 HG22 sing N N 199 ILE CG2 HG23 sing N N 200 ILE CD1 HD11 sing N N 201 ILE CD1 HD12 sing N N 202 ILE CD1 HD13 sing N N 203 ILE OXT HXT sing N N 204 LEU N CA sing N N 205 LEU N H sing N N 206 LEU N H2 sing N N 207 LEU CA C sing N N 208 LEU CA CB sing N N 209 LEU CA HA sing N N 210 LEU C O doub N N 211 LEU C OXT sing N N 212 LEU CB CG sing N N 213 LEU CB HB2 sing N N 214 LEU CB HB3 sing N N 215 LEU CG CD1 sing N N 216 LEU CG CD2 sing N N 217 LEU CG HG sing N N 218 LEU CD1 HD11 sing N N 219 LEU CD1 HD12 sing N N 220 LEU CD1 HD13 sing N N 221 LEU CD2 HD21 sing N N 222 LEU CD2 HD22 sing N N 223 LEU CD2 HD23 sing N N 224 LEU OXT HXT sing N N 225 LYS N CA sing N N 226 LYS N H sing N N 227 LYS N H2 sing N N 228 LYS CA C sing N N 229 LYS CA CB sing N N 230 LYS CA HA sing N N 231 LYS C O doub N N 232 LYS C OXT sing N N 233 LYS CB CG sing N N 234 LYS CB HB2 sing N N 235 LYS CB HB3 sing N N 236 LYS CG CD sing N N 237 LYS CG HG2 sing N N 238 LYS CG HG3 sing N N 239 LYS CD CE sing N N 240 LYS CD HD2 sing N N 241 LYS CD HD3 sing N N 242 LYS CE NZ sing N N 243 LYS CE HE2 sing N N 244 LYS CE HE3 sing N N 245 LYS NZ HZ1 sing N N 246 LYS NZ HZ2 sing N N 247 LYS NZ HZ3 sing N N 248 LYS OXT HXT sing N N 249 MET N CA sing N N 250 MET N H sing N N 251 MET N H2 sing N N 252 MET CA C sing N N 253 MET CA CB sing N N 254 MET CA HA sing N N 255 MET C O doub N N 256 MET C OXT sing N N 257 MET CB CG sing N N 258 MET CB HB2 sing N N 259 MET CB HB3 sing N N 260 MET CG SD sing N N 261 MET CG HG2 sing N N 262 MET CG HG3 sing N N 263 MET SD CE sing N N 264 MET CE HE1 sing N N 265 MET CE HE2 sing N N 266 MET CE HE3 sing N N 267 MET OXT HXT sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PRO N CA sing N N 292 PRO N CD sing N N 293 PRO N H sing N N 294 PRO CA C sing N N 295 PRO CA CB sing N N 296 PRO CA HA sing N N 297 PRO C O doub N N 298 PRO C OXT sing N N 299 PRO CB CG sing N N 300 PRO CB HB2 sing N N 301 PRO CB HB3 sing N N 302 PRO CG CD sing N N 303 PRO CG HG2 sing N N 304 PRO CG HG3 sing N N 305 PRO CD HD2 sing N N 306 PRO CD HD3 sing N N 307 PRO OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "GUANOSINE-5'-DIPHOSPHATE" GDP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1OIV _pdbx_initial_refinement_model.details 'PDB ENTRY 1OIV' #