HEADER HYDROLASE/HYDROLASE INHIBITOR 06-DEC-05 2F9P TITLE CRYSTAL STRUCTURE OF THE RECOMBINANT HUMAN ALPHA I TRYPTASE MUTANT TITLE 2 D216G IN COMPLEX WITH LEUPEPTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTASE ALPHA-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 31-275; COMPND 5 SYNONYM: TRYPTASE-1; COMPND 6 EC: 3.4.21.59; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: LEUPEPTIN; COMPND 11 CHAIN: E, F, G, H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TPSAB1, TPS1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PACGP67B; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ACTINOMYCETES STREPTOMYCES ROSEUS MA 839-A1; SOURCE 15 ORGANISM_TAXID: 66430 KEYWDS SERINE PROTEINASE, LEUPEPTIN, TRYPSIN-LIKE, DIFUCOSYLATION, KEYWDS 2 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.B.ROHR,T.SELWOOD,U.MARQUARDT,R.HUBER,N.M.SCHECHTER,W.BODE,M.E.THAN REVDAT 7 30-AUG-23 2F9P 1 REMARK REVDAT 6 20-OCT-21 2F9P 1 REMARK SEQADV HETSYN REVDAT 5 29-JUL-20 2F9P 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 13-JUL-11 2F9P 1 VERSN REVDAT 3 24-FEB-09 2F9P 1 VERSN REVDAT 2 21-MAR-06 2F9P 1 JRNL REVDAT 1 31-JAN-06 2F9P 0 JRNL AUTH K.B.ROHR,T.SELWOOD,U.MARQUARDT,R.HUBER,N.M.SCHECHTER,W.BODE, JRNL AUTH 2 M.E.THAN JRNL TITL X-RAY STRUCTURES OF FREE AND LEUPEPTIN-COMPLEXED HUMAN ALPHA JRNL TITL 2 I-TRYPTASE MUTANTS: INDICATION FOR AN ALPHA TO BETA-TRYPTASE JRNL TITL 3 TRANSITION JRNL REF J.MOL.BIOL. V. 357 195 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16414069 JRNL DOI 10.1016/J.JMB.2005.12.037 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 53696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SHELLS REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2700 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 286 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 502 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.90000 REMARK 3 B22 (A**2) : 2.68000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 35.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53746 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 16.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2F9N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG1500, PH 6.80, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, B, F, C, G, D, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE LEUPEPTIN IS COVALENTLY CONNECTED TO ACTIVE_SITE SER 195 OF THE REMARK 400 ENZYME TO FORM A HEMIACETAL. REMARK 400 REMARK 400 THE LEUPEPTIN IS OLIGOPEPTIDE, A MEMBER OF ENZYME INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: LEUPEPTIN REMARK 400 CHAIN: E, F, G, H REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 245 REMARK 465 PRO A 246 REMARK 465 LYS B 245 REMARK 465 PRO B 246 REMARK 465 LYS C 245 REMARK 465 PRO C 246 REMARK 465 LYS D 244 REMARK 465 LYS D 245 REMARK 465 PRO D 246 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 20 OE1 REMARK 480 ARG A 24 CD NE CZ NH1 NH2 REMARK 480 LYS A 26 CD CE NZ REMARK 480 GLN A 79 CD OE1 NE2 REMARK 480 ILE A 96 CB CG1 CG2 CD1 REMARK 480 ILE A 97 CB CG1 CG2 CD1 REMARK 480 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 149 CG CD OE1 OE2 REMARK 480 ARG A 174 CD NE CZ NH1 NH2 REMARK 480 ARG A 177 CZ NH1 NH2 REMARK 480 LYS A 202 CD CE NZ REMARK 480 ASN A 204 CG OD1 ND2 REMARK 480 LYS A 244 CG CD CE NZ REMARK 480 ACE E 301 CH3 REMARK 480 GLN B 20 CD OE1 NE2 REMARK 480 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 26 CE NZ REMARK 480 ARG B 37A NE CZ NH1 NH2 REMARK 480 ARG B 117 CD NE CZ NH1 NH2 REMARK 480 LYS B 202 CD CE NZ REMARK 480 LYS B 244 CB CG CD CE NZ REMARK 480 LEU F 302 CD1 CD2 REMARK 480 GLN C 79 CG CD OE1 NE2 REMARK 480 GLN C 98 CG CD OE1 NE2 REMARK 480 LEU G 302 CD1 REMARK 480 ARG D 37A CD NE CZ NH1 NH2 REMARK 480 ARG D 117 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 195 C AR7 E 304 1.42 REMARK 500 OG SER B 195 C AR7 F 304 1.43 REMARK 500 OG SER D 195 C AR7 H 304 1.43 REMARK 500 OG SER C 195 C AR7 G 304 1.44 REMARK 500 OD2 ASP C 60B O HOH C 1295 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY D 100 N - CA - C ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 -132.37 -134.72 REMARK 500 ARG A 69 118.38 -28.77 REMARK 500 TYR A 74 -24.75 82.34 REMARK 500 GLN A 98 140.95 -177.15 REMARK 500 SER A 195 137.58 -35.18 REMARK 500 SER A 214 -65.60 -120.55 REMARK 500 ASP B 37 68.81 -165.11 REMARK 500 ARG B 37A -29.19 84.76 REMARK 500 TYR B 74 -32.98 77.47 REMARK 500 GLN B 81 72.09 -150.18 REMARK 500 ILE B 97 81.89 46.54 REMARK 500 GLN B 98 143.92 173.19 REMARK 500 THR B 99 61.10 -116.92 REMARK 500 PRO B 152B 20.79 -79.09 REMARK 500 ASP C 37 -133.55 -135.58 REMARK 500 ARG C 69 117.92 -31.65 REMARK 500 TYR C 74 -24.52 81.87 REMARK 500 GLN C 98 140.81 -171.90 REMARK 500 SER C 195 136.81 -33.38 REMARK 500 ASP D 37 69.13 -166.74 REMARK 500 ARG D 37A -32.45 87.03 REMARK 500 VAL D 59 30.26 -99.85 REMARK 500 TYR D 74 -31.01 79.22 REMARK 500 ILE D 97 71.16 61.40 REMARK 500 GLN D 98 141.58 172.58 REMARK 500 THR D 99 71.46 -114.79 REMARK 500 PHE D 153 60.44 60.30 REMARK 500 SER D 186 5.31 -69.74 REMARK 500 LYS D 192 131.29 -39.64 REMARK 500 SER D 214 -66.18 -120.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F9N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ALPHA I TRYPTASE MUTANT K192Q/D216G IN COMPLEX REMARK 900 WITH LEUPEPTIN REMARK 900 RELATED ID: 2F9O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ALPHA I TRYPTASE MUTANT D216G REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A DISCREPANCY IN THE NORINE AND PDB NUMBERING, AS NORINE REMARK 999 COUNTS ACE AND LEU TOGETHER AS ONE RESIDUE. SO THE DBREF WILL REMARK 999 REPORT 4 PDB RESIDUES MATCHING NORINE 3 RESIDUE DBREF 2F9P A 16 246 GB 1182067 AAA86934 31 275 DBREF 2F9P B 16 246 GB 1182067 AAA86934 31 275 DBREF 2F9P C 16 246 GB 1182067 AAA86934 31 275 DBREF 2F9P D 16 246 GB 1182067 AAA86934 31 275 DBREF 2F9P E 301 304 NOR NOR00487 NOR00487 1 3 DBREF 2F9P F 301 304 NOR NOR00487 NOR00487 1 3 DBREF 2F9P G 301 304 NOR NOR00487 NOR00487 1 3 DBREF 2F9P H 301 304 NOR NOR00487 NOR00487 1 3 SEQADV 2F9P VAL A 59 GB 1182067 LEU 76 ENGINEERED MUTATION SEQADV 2F9P GLY A 216 GB 1182067 ASP 245 ENGINEERED MUTATION SEQADV 2F9P VAL B 59 GB 1182067 LEU 76 ENGINEERED MUTATION SEQADV 2F9P GLY B 216 GB 1182067 ASP 245 ENGINEERED MUTATION SEQADV 2F9P VAL C 59 GB 1182067 LEU 76 ENGINEERED MUTATION SEQADV 2F9P GLY C 216 GB 1182067 ASP 245 ENGINEERED MUTATION SEQADV 2F9P VAL D 59 GB 1182067 LEU 76 ENGINEERED MUTATION SEQADV 2F9P GLY D 216 GB 1182067 ASP 245 ENGINEERED MUTATION SEQRES 1 A 245 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 A 245 TRP GLN VAL SER LEU ARG VAL ARG ASP ARG TYR TRP MET SEQRES 3 A 245 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 A 245 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 A 245 LEU ALA THR LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 A 245 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 A 245 VAL HIS PRO GLN PHE TYR ILE ILE GLN THR GLY ALA ASP SEQRES 8 A 245 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL ASN ILE SER SEQRES 9 A 245 SER ARG VAL HIS THR VAL MET LEU PRO PRO ALA SER GLU SEQRES 10 A 245 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 A 245 GLY ASP VAL ASP ASN ASP GLU PRO LEU PRO PRO PRO PHE SEQRES 12 A 245 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 A 245 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 A 245 ASP ASP VAL ARG ILE ILE ARG ASP ASP MET LEU CYS ALA SEQRES 15 A 245 GLY ASN SER GLN ARG ASP SER CYS LYS GLY ASP SER GLY SEQRES 16 A 245 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 A 245 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 A 245 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 A 245 ASP TRP ILE HIS HIS TYR VAL PRO LYS LYS PRO SEQRES 1 E 4 ACE LEU LEU AR7 SEQRES 1 B 245 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 B 245 TRP GLN VAL SER LEU ARG VAL ARG ASP ARG TYR TRP MET SEQRES 3 B 245 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 B 245 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 B 245 LEU ALA THR LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 B 245 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 B 245 VAL HIS PRO GLN PHE TYR ILE ILE GLN THR GLY ALA ASP SEQRES 8 B 245 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL ASN ILE SER SEQRES 9 B 245 SER ARG VAL HIS THR VAL MET LEU PRO PRO ALA SER GLU SEQRES 10 B 245 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 B 245 GLY ASP VAL ASP ASN ASP GLU PRO LEU PRO PRO PRO PHE SEQRES 12 B 245 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 B 245 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 B 245 ASP ASP VAL ARG ILE ILE ARG ASP ASP MET LEU CYS ALA SEQRES 15 B 245 GLY ASN SER GLN ARG ASP SER CYS LYS GLY ASP SER GLY SEQRES 16 B 245 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 B 245 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 B 245 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 B 245 ASP TRP ILE HIS HIS TYR VAL PRO LYS LYS PRO SEQRES 1 F 4 ACE LEU LEU AR7 SEQRES 1 C 245 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 C 245 TRP GLN VAL SER LEU ARG VAL ARG ASP ARG TYR TRP MET SEQRES 3 C 245 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 C 245 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 C 245 LEU ALA THR LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 C 245 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 C 245 VAL HIS PRO GLN PHE TYR ILE ILE GLN THR GLY ALA ASP SEQRES 8 C 245 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL ASN ILE SER SEQRES 9 C 245 SER ARG VAL HIS THR VAL MET LEU PRO PRO ALA SER GLU SEQRES 10 C 245 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 C 245 GLY ASP VAL ASP ASN ASP GLU PRO LEU PRO PRO PRO PHE SEQRES 12 C 245 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 C 245 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 C 245 ASP ASP VAL ARG ILE ILE ARG ASP ASP MET LEU CYS ALA SEQRES 15 C 245 GLY ASN SER GLN ARG ASP SER CYS LYS GLY ASP SER GLY SEQRES 16 C 245 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 C 245 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 C 245 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 C 245 ASP TRP ILE HIS HIS TYR VAL PRO LYS LYS PRO SEQRES 1 G 4 ACE LEU LEU AR7 SEQRES 1 D 245 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 D 245 TRP GLN VAL SER LEU ARG VAL ARG ASP ARG TYR TRP MET SEQRES 3 D 245 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 D 245 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 D 245 LEU ALA THR LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 D 245 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 D 245 VAL HIS PRO GLN PHE TYR ILE ILE GLN THR GLY ALA ASP SEQRES 8 D 245 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL ASN ILE SER SEQRES 9 D 245 SER ARG VAL HIS THR VAL MET LEU PRO PRO ALA SER GLU SEQRES 10 D 245 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 D 245 GLY ASP VAL ASP ASN ASP GLU PRO LEU PRO PRO PRO PHE SEQRES 12 D 245 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 D 245 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 D 245 ASP ASP VAL ARG ILE ILE ARG ASP ASP MET LEU CYS ALA SEQRES 15 D 245 GLY ASN SER GLN ARG ASP SER CYS LYS GLY ASP SER GLY SEQRES 16 D 245 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 D 245 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 D 245 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 D 245 ASP TRP ILE HIS HIS TYR VAL PRO LYS LYS PRO SEQRES 1 H 4 ACE LEU LEU AR7 MODRES 2F9P ASN B 113 ASN GLYCOSYLATION SITE MODRES 2F9P ASN D 113 ASN GLYCOSYLATION SITE HET ACE E 301 3 HET AR7 E 304 11 HET ACE F 301 3 HET AR7 F 304 11 HET ACE G 301 3 HET AR7 G 304 11 HET ACE H 301 3 HET AR7 H 304 11 HET NAG I 1 14 HET FUC I 2 10 HET BU3 A1250 6 HET NAG B1000 14 HET BU3 B1251 6 HET BU3 C1252 6 HET BU3 D1253 6 HETNAM ACE ACETYL GROUP HETNAM AR7 AMINO{[(4S)-4-AMINO-5,5- HETNAM 2 AR7 DIHYDROXYPENTYL]AMINO}METHANIMINIUM HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 ACE 4(C2 H4 O) FORMUL 2 AR7 4(C6 H17 N4 O2 1+) FORMUL 9 NAG 2(C8 H15 N O6) FORMUL 9 FUC C6 H12 O5 FORMUL 10 BU3 4(C4 H10 O2) FORMUL 15 HOH *502(H2 O) HELIX 1 1 ALA A 55 VAL A 59 5 5 HELIX 2 2 ASP A 60E ALA A 62 5 3 HELIX 3 3 GLU A 164 LEU A 173A 1 11 HELIX 4 4 TYR A 234 HIS A 239 1 6 HELIX 5 5 ALA B 55 GLY B 60 5 6 HELIX 6 6 ASP B 60E ALA B 62 5 3 HELIX 7 7 GLU B 164 TYR B 172 1 9 HELIX 8 8 TYR B 234 HIS B 239 1 6 HELIX 9 9 ALA C 55 GLY C 60 5 6 HELIX 10 10 ASP C 60E ALA C 62 5 3 HELIX 11 11 GLU C 164 LEU C 173A 1 11 HELIX 12 12 TYR C 234 HIS C 239 1 6 HELIX 13 13 ALA D 55 GLY D 60 5 6 HELIX 14 14 ASP D 60E ALA D 62 5 3 HELIX 15 15 GLU D 164 TYR D 172 1 9 HELIX 16 16 TYR D 234 HIS D 239 1 6 SHEET 1 A 8 GLN A 20 GLU A 21 0 SHEET 2 A 8 LYS A 156 LYS A 159 -1 O GLN A 157 N GLN A 20 SHEET 3 A 8 CYS A 136 GLY A 140 -1 N GLY A 140 O LYS A 156 SHEET 4 A 8 PRO A 198 VAL A 203 -1 O VAL A 200 N TRP A 137 SHEET 5 A 8 THR A 206 TRP A 215 -1 O THR A 206 N VAL A 203 SHEET 6 A 8 GLY A 226 ARG A 230 -1 O ILE A 227 N TRP A 215 SHEET 7 A 8 MET A 180 ALA A 183 -1 N LEU A 181 O TYR A 228 SHEET 8 A 8 ILE A 162 MET A 163 -1 N MET A 163 O CYS A 182 SHEET 1 B 6 LEU A 64 LEU A 68 0 SHEET 2 B 6 GLN A 30 ARG A 36 -1 N ARG A 34 O ARG A 65 SHEET 3 B 6 TRP A 38 HIS A 48 -1 O CYS A 42 N LEU A 33 SHEET 4 B 6 TRP A 51 THR A 54 -1 O LEU A 53 N SER A 45 SHEET 5 B 6 ALA A 104 LEU A 108 -1 O LEU A 106 N VAL A 52 SHEET 6 B 6 VAL A 85 VAL A 90 -1 N ILE A 89 O LEU A 105 SHEET 1 C 8 GLN B 20 GLU B 21 0 SHEET 2 C 8 LYS B 156 VAL B 160 -1 O GLN B 157 N GLN B 20 SHEET 3 C 8 CYS B 136 GLY B 140 -1 N GLY B 140 O LYS B 156 SHEET 4 C 8 PRO B 198 VAL B 203 -1 O VAL B 200 N TRP B 137 SHEET 5 C 8 THR B 206 TRP B 215 -1 O THR B 206 N VAL B 203 SHEET 6 C 8 GLY B 226 ARG B 230 -1 O ILE B 227 N TRP B 215 SHEET 7 C 8 MET B 180 ALA B 183 -1 N LEU B 181 O TYR B 228 SHEET 8 C 8 ILE B 162 MET B 163 -1 N MET B 163 O CYS B 182 SHEET 1 D 7 GLN B 30 ARG B 36 0 SHEET 2 D 7 TRP B 38 HIS B 48 -1 O CYS B 42 N LEU B 33 SHEET 3 D 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 4 D 7 ALA B 104 LEU B 108 -1 O LEU B 106 N VAL B 52 SHEET 5 D 7 LEU B 83 VAL B 90 -1 N SER B 86 O GLU B 107 SHEET 6 D 7 LEU B 64 GLN B 67 -1 N VAL B 66 O LEU B 83 SHEET 7 D 7 GLN B 30 ARG B 36 -1 N ARG B 34 O ARG B 65 SHEET 1 E 8 GLN C 20 GLU C 21 0 SHEET 2 E 8 LYS C 156 LYS C 159 -1 O GLN C 157 N GLN C 20 SHEET 3 E 8 CYS C 136 GLY C 140 -1 N GLY C 140 O LYS C 156 SHEET 4 E 8 PRO C 198 VAL C 203 -1 O VAL C 200 N TRP C 137 SHEET 5 E 8 THR C 206 TRP C 215 -1 O THR C 206 N VAL C 203 SHEET 6 E 8 GLY C 226 ARG C 230 -1 O ILE C 227 N TRP C 215 SHEET 7 E 8 MET C 180 ALA C 183 -1 N LEU C 181 O TYR C 228 SHEET 8 E 8 ILE C 162 MET C 163 -1 N MET C 163 O CYS C 182 SHEET 1 F 6 LEU C 64 LEU C 68 0 SHEET 2 F 6 GLN C 30 ARG C 36 -1 N ARG C 34 O ARG C 65 SHEET 3 F 6 TRP C 38 HIS C 48 -1 O CYS C 42 N LEU C 33 SHEET 4 F 6 TRP C 51 THR C 54 -1 O LEU C 53 N SER C 45 SHEET 5 F 6 ALA C 104 LEU C 108 -1 O ALA C 104 N THR C 54 SHEET 6 F 6 VAL C 85 VAL C 90 -1 N ARG C 87 O GLU C 107 SHEET 1 G 8 GLN D 20 GLU D 21 0 SHEET 2 G 8 LYS D 156 VAL D 160 -1 O GLN D 157 N GLN D 20 SHEET 3 G 8 CYS D 136 GLY D 140 -1 N GLY D 140 O LYS D 156 SHEET 4 G 8 PRO D 198 VAL D 203 -1 O VAL D 200 N TRP D 137 SHEET 5 G 8 THR D 206 TRP D 215 -1 O THR D 206 N VAL D 203 SHEET 6 G 8 GLY D 226 ARG D 230 -1 O ILE D 227 N TRP D 215 SHEET 7 G 8 MET D 180 ALA D 183 -1 N LEU D 181 O TYR D 228 SHEET 8 G 8 ILE D 162 MET D 163 -1 N MET D 163 O CYS D 182 SHEET 1 H 7 GLN D 30 ARG D 36 0 SHEET 2 H 7 TRP D 38 HIS D 48 -1 O CYS D 42 N LEU D 33 SHEET 3 H 7 TRP D 51 THR D 54 -1 O LEU D 53 N SER D 45 SHEET 4 H 7 ALA D 104 LEU D 108 -1 O LEU D 106 N VAL D 52 SHEET 5 H 7 LEU D 83 VAL D 90 -1 N ILE D 89 O LEU D 105 SHEET 6 H 7 LEU D 64 GLN D 67 -1 N VAL D 66 O LEU D 83 SHEET 7 H 7 GLN D 30 ARG D 36 -1 N ARG D 34 O ARG D 65 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.04 SSBOND 2 CYS A 136 CYS A 201 1555 1555 2.03 SSBOND 3 CYS A 168 CYS A 182 1555 1555 2.04 SSBOND 4 CYS A 191 CYS A 220 1555 1555 2.03 SSBOND 5 CYS B 42 CYS B 58 1555 1555 2.04 SSBOND 6 CYS B 136 CYS B 201 1555 1555 2.02 SSBOND 7 CYS B 168 CYS B 182 1555 1555 2.04 SSBOND 8 CYS B 191 CYS B 220 1555 1555 2.03 SSBOND 9 CYS C 42 CYS C 58 1555 1555 2.04 SSBOND 10 CYS C 136 CYS C 201 1555 1555 2.04 SSBOND 11 CYS C 168 CYS C 182 1555 1555 2.04 SSBOND 12 CYS C 191 CYS C 220 1555 1555 2.02 SSBOND 13 CYS D 42 CYS D 58 1555 1555 2.04 SSBOND 14 CYS D 136 CYS D 201 1555 1555 2.02 SSBOND 15 CYS D 168 CYS D 182 1555 1555 2.04 SSBOND 16 CYS D 191 CYS D 220 1555 1555 2.04 LINK C ACE E 301 N LEU E 302 1555 1555 1.33 LINK C LEU E 303 N AR7 E 304 1555 1555 1.33 LINK ND2 ASN B 113 C1 NAG B1000 1555 1555 1.44 LINK C ACE F 301 N LEU F 302 1555 1555 1.32 LINK C LEU F 303 N AR7 F 304 1555 1555 1.33 LINK C ACE G 301 N LEU G 302 1555 1555 1.33 LINK C LEU G 303 N AR7 G 304 1555 1555 1.34 LINK ND2 ASN D 113 C1 NAG I 1 1555 1555 1.44 LINK C ACE H 301 N LEU H 302 1555 1555 1.32 LINK C LEU H 303 N AR7 H 304 1555 1555 1.33 LINK O3 NAG I 1 C1 FUC I 2 1555 1555 1.40 CISPEP 1 GLY A 60 PRO A 60A 0 0.15 CISPEP 2 GLY A 60 PRO A 60A 0 0.12 CISPEP 3 PRO A 152A PRO A 152B 0 0.88 CISPEP 4 GLY B 60 PRO B 60A 0 -0.34 CISPEP 5 GLY B 60 PRO B 60A 0 -0.56 CISPEP 6 PRO B 152A PRO B 152B 0 1.31 CISPEP 7 GLY C 60 PRO C 60A 0 0.25 CISPEP 8 GLY C 60 PRO C 60A 0 0.19 CISPEP 9 PRO C 152A PRO C 152B 0 1.13 CISPEP 10 GLY D 60 PRO D 60A 0 0.87 CISPEP 11 GLY D 60 PRO D 60A 0 -0.68 CISPEP 12 PRO D 152A PRO D 152B 0 -2.14 CRYST1 83.300 88.230 162.870 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012005 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006140 0.00000