HEADER TRANSFERASE 08-DEC-05 2FAW TITLE CRYSTAL STRUCTURE OF PAPAYA GLUTAMINYL CYCLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE CYCLOTRANSFERASE; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARICA PAPAYA; SOURCE 3 ORGANISM_COMMON: PAPAYA; SOURCE 4 ORGANISM_TAXID: 3649; SOURCE 5 OTHER_DETAILS: LATEX KEYWDS 5-BLADED BETA-PROPELLER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WINTJENS,H.BELRHALI,B.CLANTIN,M.AZARKAN,C.BOMPARD,D.BAEYENS-VOLANT, AUTHOR 2 Y.LOOZE,V.VILLERET REVDAT 4 29-JUL-20 2FAW 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2FAW 1 VERSN REVDAT 2 24-FEB-09 2FAW 1 VERSN REVDAT 1 03-OCT-06 2FAW 0 JRNL AUTH R.WINTJENS,H.BELRHALI,B.CLANTIN,M.AZARKAN,C.BOMPARD, JRNL AUTH 2 D.BAEYENS-VOLANT,Y.LOOZE,V.VILLERET JRNL TITL CRYSTAL STRUCTURE OF PAPAYA GLUTAMINYL CYCLASE, AN ARCHETYPE JRNL TITL 2 FOR PLANT AND BACTERIAL GLUTAMINYL CYCLASES. JRNL REF J.MOL.BIOL. V. 357 457 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16438985 JRNL DOI 10.1016/J.JMB.2005.12.029 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.AZARKAN,C.CLANTIN,C.BOMPARD,H.BELRHALI,D.BAEYENS-VOLANT, REMARK 1 AUTH 2 Y.LOOZE,V.VILLERET REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 THE GLUTAMINYL CYCLASE FROM CARICA PAPAYA LATEX REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. F61 59 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 61499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3075 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 897 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.853 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4330 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5864 ; 1.933 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 6.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 652 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3222 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3823 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1304 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 102 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 66 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2479 ; 0.889 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4004 ; 1.484 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1851 ; 2.015 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1860 ; 3.027 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4330 ; 0.986 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 899 ; 1.897 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4225 ; 1.797 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FAW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000035665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953718, 1.77122 REMARK 200 MONOCHROMATOR : CHANEL CUT SI 111 MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL FOCUSSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALE REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.537 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 28.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 41.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 29.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27900 REMARK 200 FOR SHELL : 15.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 85 MM TRIS-HCL, 0.17 M SODIUM ACETATE, REMARK 280 25% PEG 4000, 15% GLYCEROL, PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.41000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.08500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.08500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.41000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL FORM OF THE PROTEIN IS MONOMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ARG A 255 REMARK 465 ASP A 256 REMARK 465 ASN A 257 REMARK 465 THR A 258 REMARK 465 LEU A 259 REMARK 465 SER A 260 REMARK 465 LEU A 261 REMARK 465 LYS A 262 REMARK 465 THR A 263 REMARK 465 ASP A 264 REMARK 465 ILE A 265 REMARK 465 ASP A 266 REMARK 465 ARG B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ARG B 255 REMARK 465 ASP B 256 REMARK 465 ASN B 257 REMARK 465 THR B 258 REMARK 465 LEU B 259 REMARK 465 SER B 260 REMARK 465 LEU B 261 REMARK 465 LYS B 262 REMARK 465 THR B 263 REMARK 465 ASP B 264 REMARK 465 ILE B 265 REMARK 465 ASP B 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1219 O HOH B 1214 2.10 REMARK 500 C4 NAG C 1 C1 NAG C 2 2.14 REMARK 500 O4 NAG D 1 C2 NAG D 3 2.18 REMARK 500 ND2 ASN A 101 O5 NAG C 1 2.18 REMARK 500 OD2 ASP B 204 O HOH B 1212 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 203 O PRO B 19 3545 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 -81.46 -93.13 REMARK 500 LEU A 40 131.56 80.51 REMARK 500 GLU A 69 -134.78 -126.39 REMARK 500 TRP A 110 -92.81 -106.95 REMARK 500 ASN A 155 -119.62 -116.63 REMARK 500 ASP A 206 -154.23 -90.31 REMARK 500 ASN A 209 126.69 -172.17 REMARK 500 LYS A 218 61.15 62.17 REMARK 500 THR A 223 -159.59 -147.30 REMARK 500 ALA B 29 -78.65 -97.08 REMARK 500 LEU B 40 127.16 75.67 REMARK 500 GLU B 69 -137.23 -127.09 REMARK 500 TRP B 110 -84.92 -107.55 REMARK 500 LYS B 117 -54.88 -120.08 REMARK 500 ASP B 123 21.34 -144.69 REMARK 500 ASN B 155 -120.64 -125.29 REMARK 500 GLN B 170 3.84 82.22 REMARK 500 ASP B 206 -154.10 -88.82 REMARK 500 ASN B 209 131.65 -172.76 REMARK 500 THR B 223 -159.98 -150.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 26 O REMARK 620 2 GLU A 156 OE1 85.7 REMARK 620 3 GLU A 156 OE2 112.3 53.1 REMARK 620 4 LEU A 157 O 157.4 84.7 77.5 REMARK 620 5 GLU A 158 OE1 94.1 159.7 142.9 88.0 REMARK 620 6 ILE A 211 O 84.8 118.6 75.7 117.7 81.5 REMARK 620 7 HOH A1198 O 83.9 78.2 125.1 74.2 81.7 158.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 26 O REMARK 620 2 GLU B 156 OE1 84.5 REMARK 620 3 GLU B 156 OE2 112.0 53.1 REMARK 620 4 LEU B 157 O 158.1 88.0 78.9 REMARK 620 5 GLU B 158 OE1 92.9 162.1 142.6 88.0 REMARK 620 6 ILE B 211 O 83.1 118.9 77.6 118.4 78.2 REMARK 620 7 HOH B1191 O 83.0 80.0 126.9 75.5 82.0 155.1 REMARK 620 N 1 2 3 4 5 6 DBREF 2FAW A 1 266 UNP O81226 O81226_CARPA 23 288 DBREF 2FAW B 1 266 UNP O81226 O81226_CARPA 23 288 SEQRES 1 A 266 ARG PRO SER SER ARG VAL TYR ILE VAL GLU VAL LEU ASN SEQRES 2 A 266 GLU PHE PRO HIS ASP PRO TYR ALA PHE THR GLN GLY LEU SEQRES 3 A 266 VAL TYR ALA GLU ASN ASP THR LEU PHE GLU SER THR GLY SEQRES 4 A 266 LEU TYR GLY ARG SER SER VAL ARG GLN VAL ALA LEU GLN SEQRES 5 A 266 THR GLY LYS VAL GLU ASN ILE HIS LYS MET ASP ASP SER SEQRES 6 A 266 TYR PHE GLY GLU GLY LEU THR LEU LEU ASN GLU LYS LEU SEQRES 7 A 266 TYR GLN VAL VAL TRP LEU LYS ASN ILE GLY PHE ILE TYR SEQRES 8 A 266 ASP ARG ARG THR LEU SER ASN ILE LYS ASN PHE THR HIS SEQRES 9 A 266 GLN MET LYS ASP GLY TRP GLY LEU ALA THR ASP GLY LYS SEQRES 10 A 266 ILE LEU TYR GLY SER ASP GLY THR SER ILE LEU TYR GLU SEQRES 11 A 266 ILE ASP PRO HIS THR PHE LYS LEU ILE LYS LYS HIS ASN SEQRES 12 A 266 VAL LYS TYR ASN GLY HIS ARG VAL ILE ARG LEU ASN GLU SEQRES 13 A 266 LEU GLU TYR ILE ASN GLY GLU VAL TRP ALA ASN ILE TRP SEQRES 14 A 266 GLN THR ASP CYS ILE ALA ARG ILE SER ALA LYS ASP GLY SEQRES 15 A 266 THR LEU LEU GLY TRP ILE LEU LEU PRO ASN LEU ARG LYS SEQRES 16 A 266 LYS LEU ILE ASP GLU GLY PHE ARG ASP ILE ASP VAL LEU SEQRES 17 A 266 ASN GLY ILE ALA TRP ASP GLN GLU ASN LYS ARG ILE PHE SEQRES 18 A 266 VAL THR GLY LYS LEU TRP PRO LYS LEU PHE GLU ILE LYS SEQRES 19 A 266 LEU HIS LEU VAL ARG HIS ARG ILE PRO ASP GLY TYR ILE SEQRES 20 A 266 GLU ARG HIS CYS LEU ASN LEU ARG ASP ASN THR LEU SER SEQRES 21 A 266 LEU LYS THR ASP ILE ASP SEQRES 1 B 266 ARG PRO SER SER ARG VAL TYR ILE VAL GLU VAL LEU ASN SEQRES 2 B 266 GLU PHE PRO HIS ASP PRO TYR ALA PHE THR GLN GLY LEU SEQRES 3 B 266 VAL TYR ALA GLU ASN ASP THR LEU PHE GLU SER THR GLY SEQRES 4 B 266 LEU TYR GLY ARG SER SER VAL ARG GLN VAL ALA LEU GLN SEQRES 5 B 266 THR GLY LYS VAL GLU ASN ILE HIS LYS MET ASP ASP SER SEQRES 6 B 266 TYR PHE GLY GLU GLY LEU THR LEU LEU ASN GLU LYS LEU SEQRES 7 B 266 TYR GLN VAL VAL TRP LEU LYS ASN ILE GLY PHE ILE TYR SEQRES 8 B 266 ASP ARG ARG THR LEU SER ASN ILE LYS ASN PHE THR HIS SEQRES 9 B 266 GLN MET LYS ASP GLY TRP GLY LEU ALA THR ASP GLY LYS SEQRES 10 B 266 ILE LEU TYR GLY SER ASP GLY THR SER ILE LEU TYR GLU SEQRES 11 B 266 ILE ASP PRO HIS THR PHE LYS LEU ILE LYS LYS HIS ASN SEQRES 12 B 266 VAL LYS TYR ASN GLY HIS ARG VAL ILE ARG LEU ASN GLU SEQRES 13 B 266 LEU GLU TYR ILE ASN GLY GLU VAL TRP ALA ASN ILE TRP SEQRES 14 B 266 GLN THR ASP CYS ILE ALA ARG ILE SER ALA LYS ASP GLY SEQRES 15 B 266 THR LEU LEU GLY TRP ILE LEU LEU PRO ASN LEU ARG LYS SEQRES 16 B 266 LYS LEU ILE ASP GLU GLY PHE ARG ASP ILE ASP VAL LEU SEQRES 17 B 266 ASN GLY ILE ALA TRP ASP GLN GLU ASN LYS ARG ILE PHE SEQRES 18 B 266 VAL THR GLY LYS LEU TRP PRO LYS LEU PHE GLU ILE LYS SEQRES 19 B 266 LEU HIS LEU VAL ARG HIS ARG ILE PRO ASP GLY TYR ILE SEQRES 20 B 266 GLU ARG HIS CYS LEU ASN LEU ARG ASP ASN THR LEU SER SEQRES 21 B 266 LEU LYS THR ASP ILE ASP MODRES 2FAW ASN A 101 ASN GLYCOSYLATION SITE MODRES 2FAW ASN B 101 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET FUC C 4 10 HET NAG D 1 14 HET FUC D 2 10 HET NAG D 3 14 HET ZN A1001 1 HET TRS A1003 8 HET ZN B1002 1 HET ACY B1004 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM ACY ACETIC ACID HETSYN TRS TRIS BUFFER FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 8 ACY C2 H4 O2 FORMUL 9 HOH *897(H2 O) HELIX 1 1 LEU A 190 GLU A 200 1 11 HELIX 2 2 GLY A 245 LEU A 252 1 8 HELIX 3 3 LEU B 190 GLU B 200 1 11 HELIX 4 4 GLY B 245 CYS B 251 1 7 SHEET 1 A 8 LEU A 154 ILE A 160 0 SHEET 2 A 8 GLU A 163 ILE A 168 -1 O TRP A 165 N GLU A 158 SHEET 3 A 8 CYS A 173 SER A 178 -1 O ALA A 175 N ALA A 166 SHEET 4 A 8 LEU A 184 LEU A 189 -1 O GLY A 186 N ARG A 176 SHEET 5 A 8 VAL A 6 PRO A 16 1 N TYR A 7 O TRP A 187 SHEET 6 A 8 LYS A 229 LEU A 237 -1 O GLU A 232 N LEU A 12 SHEET 7 A 8 ARG A 219 GLY A 224 -1 N VAL A 222 O PHE A 231 SHEET 8 A 8 LEU A 208 ASP A 214 -1 N ASP A 214 O ARG A 219 SHEET 1 B 4 THR A 23 TYR A 28 0 SHEET 2 B 4 THR A 33 THR A 38 -1 O SER A 37 N GLN A 24 SHEET 3 B 4 SER A 45 ALA A 50 -1 O VAL A 49 N LEU A 34 SHEET 4 B 4 VAL A 56 LYS A 61 -1 O HIS A 60 N VAL A 46 SHEET 1 C 4 GLY A 68 LEU A 74 0 SHEET 2 C 4 LYS A 77 VAL A 82 -1 O LYS A 77 N LEU A 74 SHEET 3 C 4 ILE A 87 ASP A 92 -1 O PHE A 89 N GLN A 80 SHEET 4 C 4 ASN A 98 THR A 103 -1 O PHE A 102 N GLY A 88 SHEET 1 D 4 LEU A 112 THR A 114 0 SHEET 2 D 4 LEU A 119 SER A 122 -1 O TYR A 120 N ALA A 113 SHEET 3 D 4 ILE A 127 ILE A 131 -1 O ILE A 131 N LEU A 119 SHEET 4 D 4 LEU A 138 ASN A 143 -1 O ILE A 139 N GLU A 130 SHEET 1 E 2 LYS A 145 TYR A 146 0 SHEET 2 E 2 HIS A 149 ARG A 150 -1 O HIS A 149 N TYR A 146 SHEET 1 F 8 LEU B 154 ILE B 160 0 SHEET 2 F 8 GLU B 163 ILE B 168 -1 O TRP B 165 N GLU B 158 SHEET 3 F 8 CYS B 173 SER B 178 -1 O ILE B 177 N VAL B 164 SHEET 4 F 8 LEU B 184 LEU B 189 -1 O ILE B 188 N ILE B 174 SHEET 5 F 8 VAL B 6 PRO B 16 1 N TYR B 7 O TRP B 187 SHEET 6 F 8 LYS B 229 LEU B 237 -1 O GLU B 232 N LEU B 12 SHEET 7 F 8 ARG B 219 GLY B 224 -1 N VAL B 222 O PHE B 231 SHEET 8 F 8 LEU B 208 ASP B 214 -1 N ALA B 212 O PHE B 221 SHEET 1 G 4 THR B 23 TYR B 28 0 SHEET 2 G 4 THR B 33 THR B 38 -1 O SER B 37 N GLN B 24 SHEET 3 G 4 SER B 45 ALA B 50 -1 O VAL B 49 N LEU B 34 SHEET 4 G 4 VAL B 56 LYS B 61 -1 O HIS B 60 N VAL B 46 SHEET 1 H 4 GLY B 68 LEU B 74 0 SHEET 2 H 4 LYS B 77 VAL B 82 -1 O LYS B 77 N LEU B 74 SHEET 3 H 4 ILE B 87 ASP B 92 -1 O PHE B 89 N GLN B 80 SHEET 4 H 4 ASN B 98 THR B 103 -1 O PHE B 102 N GLY B 88 SHEET 1 I 4 LEU B 112 THR B 114 0 SHEET 2 I 4 LEU B 119 GLY B 121 -1 O TYR B 120 N ALA B 113 SHEET 3 I 4 ILE B 127 ILE B 131 -1 O TYR B 129 N GLY B 121 SHEET 4 I 4 LEU B 138 ASN B 143 -1 O ILE B 139 N GLU B 130 SHEET 1 J 2 LYS B 145 TYR B 146 0 SHEET 2 J 2 HIS B 149 ARG B 150 -1 O HIS B 149 N TYR B 146 SSBOND 1 CYS A 173 CYS A 251 1555 1555 2.08 SSBOND 2 CYS B 173 CYS B 251 1555 1555 2.06 LINK ND2 ASN A 101 C1 NAG C 1 1555 1555 1.59 LINK ND2 ASN B 101 C1 NAG D 1 1555 1555 1.74 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.33 LINK O3 NAG C 1 C1 FUC C 4 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.42 LINK O3 NAG D 1 C1 FUC D 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 3 1555 1555 1.34 LINK O LEU A 26 ZN ZN A1001 1555 1555 2.19 LINK OE1 GLU A 156 ZN ZN A1001 1555 1555 2.31 LINK OE2 GLU A 156 ZN ZN A1001 1555 1555 2.46 LINK O LEU A 157 ZN ZN A1001 1555 1555 2.27 LINK OE1 GLU A 158 ZN ZN A1001 1555 1555 2.22 LINK O ILE A 211 ZN ZN A1001 1555 1555 2.24 LINK ZN ZN A1001 O HOH A1198 1555 1555 2.29 LINK O LEU B 26 ZN ZN B1002 1555 1555 2.24 LINK OE1 GLU B 156 ZN ZN B1002 1555 1555 2.33 LINK OE2 GLU B 156 ZN ZN B1002 1555 1555 2.50 LINK O LEU B 157 ZN ZN B1002 1555 1555 2.24 LINK OE1 GLU B 158 ZN ZN B1002 1555 1555 2.22 LINK O ILE B 211 ZN ZN B1002 1555 1555 2.24 LINK ZN ZN B1002 O HOH B1191 1555 1555 2.31 CRYST1 62.820 81.200 108.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009245 0.00000