data_2FB0 # _entry.id 2FB0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2FB0 RCSB RCSB035668 WWPDB D_1000035668 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1x7v 'CRYSTAL STRUCTURE OF PA3566 FROM PSEUDOMONAS AERUGINOSA' unspecified TargetDB APC81531 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FB0 _pdbx_database_status.recvd_initial_deposition_date 2005-12-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nocek, B.' 1 'Hatzos, C.' 2 'Abdullah, J.' 3 'Collart, F.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title ;Crystal structure of conserved hypothetical protein from Bacteroides thetaiotaomicron VPI-5482 at 2.10 resolution ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nocek, B.' 1 primary 'Hatzos, C.' 2 primary 'Abdullah, J.' 3 primary 'Collart, F.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 2FB0 _cell.length_a 118.360 _cell.length_b 118.360 _cell.length_c 118.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FB0 _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'conserved hypothetical protein' 10961.977 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 4 water nat water 18.015 86 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;ANS(MSE)IRLNVFVRVNETNREKAIEAAKELTACSLKEEGCIAYDTFESSTRRDVF(MSE)ICETWQNAEVLAAHEKTA HFAQYVGIIQELAE(MSE)KLEKFEF ; _entity_poly.pdbx_seq_one_letter_code_can ;ANSMIRLNVFVRVNETNREKAIEAAKELTACSLKEEGCIAYDTFESSTRRDVFMICETWQNAEVLAAHEKTAHFAQYVGI IQELAEMKLEKFEF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC81531 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASN n 1 3 SER n 1 4 MSE n 1 5 ILE n 1 6 ARG n 1 7 LEU n 1 8 ASN n 1 9 VAL n 1 10 PHE n 1 11 VAL n 1 12 ARG n 1 13 VAL n 1 14 ASN n 1 15 GLU n 1 16 THR n 1 17 ASN n 1 18 ARG n 1 19 GLU n 1 20 LYS n 1 21 ALA n 1 22 ILE n 1 23 GLU n 1 24 ALA n 1 25 ALA n 1 26 LYS n 1 27 GLU n 1 28 LEU n 1 29 THR n 1 30 ALA n 1 31 CYS n 1 32 SER n 1 33 LEU n 1 34 LYS n 1 35 GLU n 1 36 GLU n 1 37 GLY n 1 38 CYS n 1 39 ILE n 1 40 ALA n 1 41 TYR n 1 42 ASP n 1 43 THR n 1 44 PHE n 1 45 GLU n 1 46 SER n 1 47 SER n 1 48 THR n 1 49 ARG n 1 50 ARG n 1 51 ASP n 1 52 VAL n 1 53 PHE n 1 54 MSE n 1 55 ILE n 1 56 CYS n 1 57 GLU n 1 58 THR n 1 59 TRP n 1 60 GLN n 1 61 ASN n 1 62 ALA n 1 63 GLU n 1 64 VAL n 1 65 LEU n 1 66 ALA n 1 67 ALA n 1 68 HIS n 1 69 GLU n 1 70 LYS n 1 71 THR n 1 72 ALA n 1 73 HIS n 1 74 PHE n 1 75 ALA n 1 76 GLN n 1 77 TYR n 1 78 VAL n 1 79 GLY n 1 80 ILE n 1 81 ILE n 1 82 GLN n 1 83 GLU n 1 84 LEU n 1 85 ALA n 1 86 GLU n 1 87 MSE n 1 88 LYS n 1 89 LEU n 1 90 GLU n 1 91 LYS n 1 92 PHE n 1 93 GLU n 1 94 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacteroides _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Bacteroides thetaiotaomicron' _entity_src_gen.gene_src_strain VPI-5482 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226186 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name peT15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAO76535 _struct_ref.pdbx_db_accession 29338735 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIRLNVFVRVNETNREKAIEAAKELTACSLKEEGCIAYDTFESSTRRDVFMICETWQNAEVLAAHEKTAHFAQYVGIIQE LAEMKLEKFEF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FB0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 29338735 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 91 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FB0 ALA A 1 ? GB 29338735 ? ? 'CLONING ARTIFACT' -2 1 1 2FB0 ASN A 2 ? GB 29338735 ? ? 'CLONING ARTIFACT' -1 2 1 2FB0 SER A 3 ? GB 29338735 ? ? 'CLONING ARTIFACT' 0 3 1 2FB0 MSE A 4 ? GB 29338735 MET 1 'MODIFIED RESIDUE' 1 4 1 2FB0 MSE A 54 ? GB 29338735 MET 51 'MODIFIED RESIDUE' 51 5 1 2FB0 MSE A 87 ? GB 29338735 MET 84 'MODIFIED RESIDUE' 84 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2FB0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '2M Ammonium Acetate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2005-11-04 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 2FB0 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.10 _reflns.number_obs 17077 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.23 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 24.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.157 _reflns_shell.percent_possible_all 99.92 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2FB0 _refine.ls_number_reflns_obs 16187 _refine.ls_number_reflns_all 17053 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.19864 _refine.ls_R_factor_all 0.1986 _refine.ls_R_factor_R_work 0.19723 _refine.ls_R_factor_R_free 0.2244 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 866 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 30.572 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.114 _refine.pdbx_overall_ESU_R_Free 0.114 _refine.overall_SU_ML 0.071 _refine.overall_SU_B 2.577 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 757 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 871 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 832 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.120 1.959 ? 1117 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.551 5.000 ? 101 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.733 24.651 ? 43 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.357 15.000 ? 152 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.302 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 121 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 626 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.185 0.200 ? 376 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.294 0.200 ? 572 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.132 0.200 ? 78 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.199 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.133 0.200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.856 1.500 ? 515 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.391 2.000 ? 798 'X-RAY DIFFRACTION' ? r_scbond_it 2.193 3.000 ? 357 'X-RAY DIFFRACTION' ? r_scangle_it 3.529 4.500 ? 319 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.102 _refine_ls_shell.d_res_low 2.157 _refine_ls_shell.number_reflns_R_work 1170 _refine_ls_shell.R_factor_R_work 0.23 _refine_ls_shell.percent_reflns_obs 99.92 _refine_ls_shell.R_factor_R_free 0.274 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2FB0 _struct.title ;Crystal Structure of Conserved Protein of Unknown Function from Bacteroides thetaiotaomicron VPI-5482 at 2.10 A Resolution, Possible Oxidoreductase ; _struct.pdbx_descriptor 'conserved hypothetical protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FB0 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Conserved hypothetical protein, SAD, Bacteroides thetaiotaomicron, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details 'Based on the analysis of crystal packing homodimer seems to be the biological unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 17 ? LEU A 33 ? ASN A 14 LEU A 30 1 ? 17 HELX_P HELX_P2 2 ASN A 61 ? GLU A 69 ? ASN A 58 GLU A 66 1 ? 9 HELX_P HELX_P3 3 THR A 71 ? ALA A 85 ? THR A 68 ALA A 82 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 3 C ? ? ? 1_555 A MSE 4 N ? ? A SER 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A ILE 5 N A ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A MSE 4 C ? ? ? 1_555 A ILE 5 N B ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A PHE 53 C ? ? ? 1_555 A MSE 54 N ? ? A PHE 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A MSE 54 C ? ? ? 1_555 A ILE 55 N ? ? A MSE 51 A ILE 52 1_555 ? ? ? ? ? ? ? 1.325 ? covale6 covale ? ? A GLU 86 C ? ? ? 1_555 A MSE 87 N ? ? A GLU 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A MSE 87 C ? ? ? 1_555 A LYS 88 N ? ? A MSE 84 A LYS 85 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 1 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id -2 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 2 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 -1 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.81 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 38 ? GLU A 45 ? CYS A 35 GLU A 42 A 2 VAL A 52 ? TRP A 59 ? VAL A 49 TRP A 56 A 3 ILE A 5 ? ARG A 12 ? ILE A 2 ARG A 9 A 4 GLU A 86 ? GLU A 93 ? GLU A 83 GLU A 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 44 ? N PHE A 41 O MSE A 54 ? O MSE A 51 A 2 3 O ILE A 55 ? O ILE A 52 N VAL A 9 ? N VAL A 6 A 3 4 N ARG A 6 ? N ARG A 3 O PHE A 92 ? O PHE A 89 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ACT A 901' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 801' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL A 802' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 803' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 804' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TYR A 41 ? TYR A 38 . ? 1_555 ? 2 AC1 4 GLU A 57 ? GLU A 54 . ? 1_555 ? 3 AC1 4 HIS A 68 ? HIS A 65 . ? 1_555 ? 4 AC1 4 PHE A 74 ? PHE A 71 . ? 1_555 ? 5 AC2 3 ALA A 72 ? ALA A 69 . ? 1_555 ? 6 AC2 3 HIS A 73 ? HIS A 70 . ? 1_555 ? 7 AC2 3 HOH G . ? HOH A 168 . ? 1_555 ? 8 AC3 2 ARG A 50 ? ARG A 47 . ? 1_555 ? 9 AC3 2 HOH G . ? HOH A 103 . ? 1_555 ? 10 AC4 4 ARG A 12 ? ARG A 9 . ? 1_555 ? 11 AC4 4 ASN A 14 ? ASN A 11 . ? 7_564 ? 12 AC4 4 ARG A 49 ? ARG A 46 . ? 1_555 ? 13 AC4 4 ASP A 51 ? ASP A 48 . ? 1_555 ? 14 AC5 5 GLU A 90 ? GLU A 87 . ? 1_555 ? 15 AC5 5 LYS A 91 ? LYS A 88 . ? 1_555 ? 16 AC5 5 PHE A 92 ? PHE A 89 . ? 1_555 ? 17 AC5 5 PHE A 94 ? PHE A 91 . ? 24_555 ? 18 AC5 5 HOH G . ? HOH A 174 . ? 1_555 ? # _database_PDB_matrix.entry_id 2FB0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FB0 _atom_sites.fract_transf_matrix[1][1] 0.008449 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008449 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008449 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -2 -2 ALA ALA A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 SER 3 0 0 SER SER A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ILE 5 2 2 ILE ILE A . n A 1 6 ARG 6 3 3 ARG ARG A . n A 1 7 LEU 7 4 4 LEU LEU A . n A 1 8 ASN 8 5 5 ASN ASN A . n A 1 9 VAL 9 6 6 VAL VAL A . n A 1 10 PHE 10 7 7 PHE PHE A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 ARG 12 9 9 ARG ARG A . n A 1 13 VAL 13 10 10 VAL VAL A . n A 1 14 ASN 14 11 11 ASN ASN A . n A 1 15 GLU 15 12 12 GLU GLU A . n A 1 16 THR 16 13 13 THR THR A . n A 1 17 ASN 17 14 14 ASN ASN A . n A 1 18 ARG 18 15 15 ARG ARG A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 LYS 20 17 17 LYS LYS A . n A 1 21 ALA 21 18 18 ALA ALA A . n A 1 22 ILE 22 19 19 ILE ILE A . n A 1 23 GLU 23 20 20 GLU GLU A . n A 1 24 ALA 24 21 21 ALA ALA A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 GLU 27 24 24 GLU GLU A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 THR 29 26 26 THR THR A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 CYS 31 28 28 CYS CYS A . n A 1 32 SER 32 29 29 SER SER A . n A 1 33 LEU 33 30 30 LEU LEU A . n A 1 34 LYS 34 31 31 LYS LYS A . n A 1 35 GLU 35 32 32 GLU GLU A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 CYS 38 35 35 CYS CYS A . n A 1 39 ILE 39 36 36 ILE ILE A . n A 1 40 ALA 40 37 37 ALA ALA A . n A 1 41 TYR 41 38 38 TYR TYR A . n A 1 42 ASP 42 39 39 ASP ASP A . n A 1 43 THR 43 40 40 THR THR A . n A 1 44 PHE 44 41 41 PHE PHE A . n A 1 45 GLU 45 42 42 GLU GLU A . n A 1 46 SER 46 43 43 SER SER A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 THR 48 45 45 THR THR A . n A 1 49 ARG 49 46 46 ARG ARG A . n A 1 50 ARG 50 47 47 ARG ARG A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 VAL 52 49 49 VAL VAL A . n A 1 53 PHE 53 50 50 PHE PHE A . n A 1 54 MSE 54 51 51 MSE MSE A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 CYS 56 53 53 CYS CYS A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 THR 58 55 55 THR THR A . n A 1 59 TRP 59 56 56 TRP TRP A . n A 1 60 GLN 60 57 57 GLN GLN A . n A 1 61 ASN 61 58 58 ASN ASN A . n A 1 62 ALA 62 59 59 ALA ALA A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 ALA 67 64 64 ALA ALA A . n A 1 68 HIS 68 65 65 HIS HIS A . n A 1 69 GLU 69 66 66 GLU GLU A . n A 1 70 LYS 70 67 67 LYS LYS A . n A 1 71 THR 71 68 68 THR THR A . n A 1 72 ALA 72 69 69 ALA ALA A . n A 1 73 HIS 73 70 70 HIS HIS A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 ALA 75 72 72 ALA ALA A . n A 1 76 GLN 76 73 73 GLN GLN A . n A 1 77 TYR 77 74 74 TYR TYR A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 GLY 79 76 76 GLY GLY A . n A 1 80 ILE 80 77 77 ILE ILE A . n A 1 81 ILE 81 78 78 ILE ILE A . n A 1 82 GLN 82 79 79 GLN GLN A . n A 1 83 GLU 83 80 80 GLU GLU A . n A 1 84 LEU 84 81 81 LEU LEU A . n A 1 85 ALA 85 82 82 ALA ALA A . n A 1 86 GLU 86 83 83 GLU GLU A . n A 1 87 MSE 87 84 84 MSE MSE A . n A 1 88 LYS 88 85 85 LYS LYS A . n A 1 89 LEU 89 86 86 LEU LEU A . n A 1 90 GLU 90 87 87 GLU GLU A . n A 1 91 LYS 91 88 88 LYS LYS A . n A 1 92 PHE 92 89 89 PHE PHE A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 PHE 94 91 91 PHE PHE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 901 901 ACT ACT A . C 3 GOL 1 801 801 GOL GOL A . D 3 GOL 1 802 802 GOL GOL A . E 3 GOL 1 803 803 GOL GOL A . F 3 GOL 1 804 804 GOL GOL A . G 4 HOH 1 93 93 HOH HOH A . G 4 HOH 2 95 95 HOH HOH A . G 4 HOH 3 97 97 HOH HOH A . G 4 HOH 4 98 98 HOH HOH A . G 4 HOH 5 99 99 HOH HOH A . G 4 HOH 6 100 100 HOH HOH A . G 4 HOH 7 101 101 HOH HOH A . G 4 HOH 8 102 102 HOH HOH A . G 4 HOH 9 103 103 HOH HOH A . G 4 HOH 10 104 104 HOH HOH A . G 4 HOH 11 105 105 HOH HOH A . G 4 HOH 12 106 106 HOH HOH A . G 4 HOH 13 107 107 HOH HOH A . G 4 HOH 14 108 108 HOH HOH A . G 4 HOH 15 110 110 HOH HOH A . G 4 HOH 16 111 111 HOH HOH A . G 4 HOH 17 112 112 HOH HOH A . G 4 HOH 18 113 113 HOH HOH A . G 4 HOH 19 114 114 HOH HOH A . G 4 HOH 20 115 115 HOH HOH A . G 4 HOH 21 116 116 HOH HOH A . G 4 HOH 22 117 117 HOH HOH A . G 4 HOH 23 118 118 HOH HOH A . G 4 HOH 24 119 119 HOH HOH A . G 4 HOH 25 120 120 HOH HOH A . G 4 HOH 26 121 121 HOH HOH A . G 4 HOH 27 122 122 HOH HOH A . G 4 HOH 28 123 123 HOH HOH A . G 4 HOH 29 124 124 HOH HOH A . G 4 HOH 30 125 125 HOH HOH A . G 4 HOH 31 126 126 HOH HOH A . G 4 HOH 32 127 127 HOH HOH A . G 4 HOH 33 128 128 HOH HOH A . G 4 HOH 34 129 129 HOH HOH A . G 4 HOH 35 130 130 HOH HOH A . G 4 HOH 36 131 131 HOH HOH A . G 4 HOH 37 132 132 HOH HOH A . G 4 HOH 38 133 133 HOH HOH A . G 4 HOH 39 134 134 HOH HOH A . G 4 HOH 40 135 135 HOH HOH A . G 4 HOH 41 136 136 HOH HOH A . G 4 HOH 42 137 137 HOH HOH A . G 4 HOH 43 138 138 HOH HOH A . G 4 HOH 44 139 139 HOH HOH A . G 4 HOH 45 140 140 HOH HOH A . G 4 HOH 46 141 141 HOH HOH A . G 4 HOH 47 142 142 HOH HOH A . G 4 HOH 48 143 143 HOH HOH A . G 4 HOH 49 144 144 HOH HOH A . G 4 HOH 50 145 145 HOH HOH A . G 4 HOH 51 147 147 HOH HOH A . G 4 HOH 52 148 148 HOH HOH A . G 4 HOH 53 149 149 HOH HOH A . G 4 HOH 54 150 150 HOH HOH A . G 4 HOH 55 151 151 HOH HOH A . G 4 HOH 56 152 152 HOH HOH A . G 4 HOH 57 153 153 HOH HOH A . G 4 HOH 58 156 156 HOH HOH A . G 4 HOH 59 157 157 HOH HOH A . G 4 HOH 60 159 159 HOH HOH A . G 4 HOH 61 160 160 HOH HOH A . G 4 HOH 62 161 161 HOH HOH A . G 4 HOH 63 162 162 HOH HOH A . G 4 HOH 64 163 163 HOH HOH A . G 4 HOH 65 164 164 HOH HOH A . G 4 HOH 66 165 165 HOH HOH A . G 4 HOH 67 166 166 HOH HOH A . G 4 HOH 68 167 167 HOH HOH A . G 4 HOH 69 168 168 HOH HOH A . G 4 HOH 70 171 171 HOH HOH A . G 4 HOH 71 173 173 HOH HOH A . G 4 HOH 72 174 174 HOH HOH A . G 4 HOH 73 175 175 HOH HOH A . G 4 HOH 74 176 176 HOH HOH A . G 4 HOH 75 177 177 HOH HOH A . G 4 HOH 76 178 178 HOH HOH A . G 4 HOH 77 179 179 HOH HOH A . G 4 HOH 78 180 180 HOH HOH A . G 4 HOH 79 181 181 HOH HOH A . G 4 HOH 80 182 182 HOH HOH A . G 4 HOH 81 183 183 HOH HOH A . G 4 HOH 82 184 184 HOH HOH A . G 4 HOH 83 185 185 HOH HOH A . G 4 HOH 84 186 186 HOH HOH A . G 4 HOH 85 187 187 HOH HOH A . G 4 HOH 86 188 188 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 54 A MSE 51 ? MET SELENOMETHIONINE 3 A MSE 87 A MSE 84 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3330 ? 1 MORE -16 ? 1 'SSA (A^2)' 9750 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 24_555 -z+3/4,-y+3/4,-x+3/4 0.0000000000 0.0000000000 -1.0000000000 88.7700000000 0.0000000000 -1.0000000000 0.0000000000 88.7700000000 -1.0000000000 0.0000000000 0.0000000000 88.7700000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 HKL-3000 phasing . ? 4 SHELX phasing . ? 5 CCP4 phasing . ? 6 ARP/wARP 'model building' . ? 7 SOLVE phasing . ? 8 RESOLVE phasing . ? 9 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 24 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 131 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 GLYCEROL GOL 4 water HOH #