HEADER STRUCTURAL PROTEIN 12-DEC-05 2FCQ TITLE X-RAY CRYSTAL STRUCTURE OF A CHEMICALLY SYNTHESIZED UBIQUITIN WITH A TITLE 2 CUBIC SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-76; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THE PROTEIN CAN BE NATURALLY FOUND IN HOMO SAPIENS (HUMAN) KEYWDS UBIQUITIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.BANG,A.V.GRIBENKO,V.TERESHKO,A.A.KOSSIAKOFF,S.B.KENT,G.I.MAKHATADZE REVDAT 6 30-AUG-23 2FCQ 1 REMARK REVDAT 5 20-OCT-21 2FCQ 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2FCQ 1 VERSN REVDAT 3 24-FEB-09 2FCQ 1 VERSN REVDAT 2 04-APR-06 2FCQ 1 JRNL REVDAT 1 31-JAN-06 2FCQ 0 JRNL AUTH D.BANG,A.V.GRIBENKO,V.TERESHKO,A.A.KOSSIAKOFF,S.B.KENT, JRNL AUTH 2 G.I.MAKHATADZE JRNL TITL DISSECTING THE ENERGETICS OF PROTEIN ALPHA-HELIX C-CAP JRNL TITL 2 TERMINATION THROUGH CHEMICAL PROTEIN SYNTHESIS. JRNL REF NAT.CHEM.BIOL. V. 2 139 2006 JRNL REFN ISSN 1552-4450 JRNL PMID 16446709 JRNL DOI 10.1038/NCHEMBIO766 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 2958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 208 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.624 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.458 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 62.771 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1177 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1126 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1588 ; 1.313 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2644 ; 0.715 ; 2.109 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 144 ; 6.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;36.629 ;26.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 240 ;17.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 194 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1256 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 194 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 244 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1160 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 588 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 25 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.257 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 971 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 298 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1190 ; 0.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 515 ; 0.000 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 398 ; 0.000 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 73 REMARK 3 RESIDUE RANGE : A 100 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8657 38.6469 -17.3587 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: -0.2686 REMARK 3 T33: -0.3818 T12: 0.0300 REMARK 3 T13: 0.0980 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 11.6065 L22: 13.8503 REMARK 3 L33: 4.2162 L12: 3.6155 REMARK 3 L13: -2.2458 L23: -0.3576 REMARK 3 S TENSOR REMARK 3 S11: 0.6578 S12: -0.4393 S13: 0.9213 REMARK 3 S21: 0.7068 S22: -0.3966 S23: 0.1404 REMARK 3 S31: -0.8834 S32: -0.0457 S33: -0.2612 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 73 REMARK 3 RESIDUE RANGE : B 600 B 800 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0048 46.9206 3.5538 REMARK 3 T TENSOR REMARK 3 T11: -0.1440 T22: -0.2358 REMARK 3 T33: -0.0382 T12: -0.1604 REMARK 3 T13: -0.1685 T23: 0.2193 REMARK 3 L TENSOR REMARK 3 L11: 14.7105 L22: 5.2611 REMARK 3 L33: 13.0674 L12: 6.2740 REMARK 3 L13: 5.5483 L23: 2.5356 REMARK 3 S TENSOR REMARK 3 S11: 0.6636 S12: -0.7155 S13: -1.5689 REMARK 3 S21: 0.1006 S22: -0.1256 S23: 0.4115 REMARK 3 S31: 0.8681 S32: -0.7744 S33: -0.5380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3300 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1YIW, CHAIN B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BY MIXING 2 UL OF UBIQUITIN SOLUTION REMARK 280 (20 MG/ML) AND 0.5 UL OF CRYSTALLIZATION BUFFER SOLUTION. THE REMARK 280 CRYSTALLIZATION BUFFER WAS PREPARED BY MIXING 3ML OF HEPES REMARK 280 BUFFER (0.1M), 3ML OF POLY(ETHYLENE GLYCOL) 3350 (25%, W/V), AND REMARK 280 0.2ML OF 1M CADMIUM ACETATE, PH 7.75, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.52950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.52950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.52950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.52950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.52950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.52950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.52950 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.52950 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.52950 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.52950 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.52950 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.52950 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.52950 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.52950 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.52950 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.52950 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.52950 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.52950 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 26.26475 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 78.79425 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 78.79425 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 26.26475 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 26.26475 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 26.26475 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 78.79425 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 78.79425 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 26.26475 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 78.79425 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 26.26475 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 78.79425 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 26.26475 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 78.79425 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 78.79425 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 78.79425 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 26.26475 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 78.79425 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 26.26475 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 26.26475 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 26.26475 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 78.79425 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 78.79425 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 26.26475 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 26.26475 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 78.79425 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 78.79425 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 78.79425 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 78.79425 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 26.26475 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 78.79425 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 26.26475 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 78.79425 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 26.26475 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 26.26475 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 26.26475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 52 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 38 -31.31 -38.38 REMARK 500 ASP A 52 138.75 -35.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 300 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 1 N REMARK 620 2 LEU A 1 O 57.5 REMARK 620 3 GLU A 16 OE1 83.1 58.0 REMARK 620 4 GLU A 16 OE2 129.9 75.5 55.9 REMARK 620 5 ASP A 32 OD2 89.2 145.8 131.4 138.6 REMARK 620 6 ASP A 32 OD1 96.4 137.3 88.1 108.3 45.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 200 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 18 OE1 REMARK 620 2 GLU A 18 OE2 67.6 REMARK 620 3 ASP A 21 OD1 68.0 110.7 REMARK 620 4 ASP A 21 OD2 99.2 165.1 56.1 REMARK 620 5 LYS A 29 NZ 162.2 112.4 125.2 82.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 100 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 64 OE1 REMARK 620 2 GLU A 64 OE2 51.0 REMARK 620 3 HIS A 68 NE2 116.6 72.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 700 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 1 N REMARK 620 2 LEU B 1 O 54.6 REMARK 620 3 GLU B 16 OE2 81.7 60.4 REMARK 620 4 GLU B 16 OE1 110.0 58.1 49.3 REMARK 620 5 ASP B 32 OD2 90.2 143.4 109.6 144.9 REMARK 620 6 ASP B 32 OD1 92.4 133.9 154.6 152.6 45.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 600 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 18 OE1 REMARK 620 2 GLU B 18 OE2 82.7 REMARK 620 3 ASP B 21 OD1 84.7 79.1 REMARK 620 4 ASP B 21 OD2 123.1 120.0 55.0 REMARK 620 5 LYS B 29 NZ 142.1 112.2 131.3 80.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 800 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 64 OE2 REMARK 620 2 GLU B 64 OE1 59.5 REMARK 620 3 HIS B 68 NE2 92.5 105.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YIW RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF A CHEMICALLY SYNTHESIZED UBIQUITIN IN REMARK 900 ORTHORHOMBIC (P212121) SPACE GROUP REMARK 900 RELATED ID: 1YJ1 RELATED DB: PDB REMARK 900 RELATED ID: 2FCM RELATED DB: PDB REMARK 900 RELATED ID: 2FCN RELATED DB: PDB REMARK 900 RELATED ID: 2FCS RELATED DB: PDB DBREF 2FCQ A 1 76 GB 15928840 AAH14880 1 76 DBREF 2FCQ B 1 76 GB 15928840 AAH14880 1 76 SEQADV 2FCQ LEU A 1 GB 15928840 MET 1 ENGINEERED MUTATION SEQADV 2FCQ LEU B 1 GB 15928840 MET 1 ENGINEERED MUTATION SEQRES 1 A 76 LEU GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 76 LEU GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET CD A 100 1 HET CD A 200 1 HET CD A 300 1 HET CD A 400 1 HET CD B 600 1 HET CD B 700 1 HET CD B 800 1 HETNAM CD CADMIUM ION FORMUL 3 CD 7(CD 2+) HELIX 1 1 THR A 22 GLU A 34 1 13 HELIX 2 2 THR B 22 GLU B 34 1 13 HELIX 3 3 PRO B 37 ASP B 39 5 3 HELIX 4 4 LEU B 56 ASN B 60 5 5 SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 A 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 A 5 GLN A 41 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 B 5 THR B 12 GLU B 16 0 SHEET 2 B 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 B 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 B 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 B 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK N LEU A 1 CD CD A 300 1555 1555 2.68 LINK O LEU A 1 CD CD A 300 1555 1555 3.05 LINK OE1 GLU A 16 CD CD A 300 1555 1555 2.22 LINK OE2 GLU A 16 CD CD A 300 1555 1555 2.56 LINK OE1 GLU A 18 CD CD A 200 1555 1555 2.27 LINK OE2 GLU A 18 CD CD A 200 6555 1555 2.23 LINK OD1 ASP A 21 CD CD A 200 1555 1555 2.24 LINK OD2 ASP A 21 CD CD A 200 1555 1555 2.21 LINK NZ LYS A 29 CD CD A 200 1555 1555 2.91 LINK OD2 ASP A 32 CD CD A 300 12554 1555 2.41 LINK OD1 ASP A 32 CD CD A 300 12554 1555 3.02 LINK OD1 ASP A 52 CD CD A 400 1555 1555 2.22 LINK OE1 GLU A 64 CD CD A 100 1555 1555 2.41 LINK OE2 GLU A 64 CD CD A 100 1555 1555 2.60 LINK NE2 HIS A 68 CD CD A 100 19555 1555 2.33 LINK N LEU B 1 CD CD B 700 1555 1555 2.76 LINK O LEU B 1 CD CD B 700 1555 1555 2.98 LINK OE2 GLU B 16 CD CD B 700 1555 1555 2.47 LINK OE1 GLU B 16 CD CD B 700 1555 1555 2.83 LINK OE1 GLU B 18 CD CD B 600 1555 1555 2.24 LINK OE2 GLU B 18 CD CD B 600 7564 1555 2.25 LINK OD1 ASP B 21 CD CD B 600 1555 1555 2.34 LINK OD2 ASP B 21 CD CD B 600 1555 1555 2.24 LINK NZ LYS B 29 CD CD B 600 1555 1555 2.67 LINK OD2 ASP B 32 CD CD B 700 10655 1555 2.28 LINK OD1 ASP B 32 CD CD B 700 10655 1555 3.04 LINK OE2 GLU B 64 CD CD B 800 18554 1555 2.20 LINK OE1 GLU B 64 CD CD B 800 18554 1555 2.23 LINK NE2 HIS B 68 CD CD B 800 1555 1555 2.20 SITE 1 AC1 2 GLU A 64 HIS A 68 SITE 1 AC2 3 GLU A 18 ASP A 21 LYS A 29 SITE 1 AC3 3 LEU A 1 GLU A 16 ASP A 32 SITE 1 AC4 1 ASP A 52 SITE 1 AC5 3 GLU B 18 ASP B 21 LYS B 29 SITE 1 AC6 3 LEU B 1 GLU B 16 ASP B 32 SITE 1 AC7 2 GLU B 64 HIS B 68 CRYST1 105.059 105.059 105.059 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009518 0.00000