HEADER BIOSYNTHETIC PROTEIN 12-DEC-05 2FCV TITLE SYRB2 WITH FE(II), BROMIDE, AND ALPHA-KETOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYRINGOMYCIN BIOSYNTHESIS ENZYME 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 3 ORGANISM_TAXID: 317; SOURCE 4 GENE: SYRB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS MONONUCLEAR IRON, CUPIN, HALOGENASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.C.BLASIAK,C.L.DRENNAN REVDAT 5 03-APR-24 2FCV 1 REMARK REVDAT 4 14-FEB-24 2FCV 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2FCV 1 VERSN REVDAT 2 24-FEB-09 2FCV 1 VERSN REVDAT 1 21-MAR-06 2FCV 0 JRNL AUTH L.C.BLASIAK,F.H.VAILLANCOURT,C.T.WALSH,C.L.DRENNAN JRNL TITL CRYSTAL STRUCTURE OF THE NON-HAEM IRON HALOGENASE SYRB2 IN JRNL TITL 2 SYRINGOMYCIN BIOSYNTHESIS. JRNL REF NATURE V. 440 368 2006 JRNL REFN ISSN 0028-0836 JRNL PMID 16541079 JRNL DOI 10.1038/NATURE04544 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 56498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SAME AS STARTING MODEL REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 296 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 465 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5020 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4267 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6811 ; 1.532 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9943 ; 1.345 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 599 ; 6.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;32.644 ;23.910 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 768 ;14.486 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;13.923 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5687 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1097 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 926 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4267 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2384 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2572 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 361 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3819 ; 1.387 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1220 ; 0.252 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4823 ; 1.535 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2422 ; 2.474 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1988 ; 3.437 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9195 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57215 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33700 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: SYRB2 WITH FE(II), CHLORIDE, AND ALPHA REMARK 200 -KETOGLUTARATE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 250 MM NA FORMATE, REMARK 280 SPERMINE TETRA-HCL, N-DECANOYL SUCROSE , PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ILE A 57 REMARK 465 SER A 58 REMARK 465 GLY A 59 REMARK 465 GLY A 60 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 54 REMARK 465 ASP B 55 REMARK 465 ALA B 56 REMARK 465 ILE B 57 REMARK 465 SER B 58 REMARK 465 GLY B 59 REMARK 465 GLY B 60 REMARK 465 THR B 61 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 ARG B 175 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 220 CG GLN A 220 CD 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 150 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 267 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 52 -71.15 -83.82 REMARK 500 ASP A 55 47.08 39.80 REMARK 500 ASP A 181 -65.90 -18.08 REMARK 500 ASP B 119 -62.99 -120.66 REMARK 500 GLU B 179 54.39 -144.18 REMARK 500 ASN B 183 69.26 -103.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 900 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 235 NE2 84.1 REMARK 620 3 AKG A 897 O2 166.5 93.8 REMARK 620 4 AKG A 897 O5 89.1 93.0 77.6 REMARK 620 5 BR A 901 BR 98.6 94.5 94.9 169.7 REMARK 620 6 HOH A1068 O 89.3 172.7 93.3 89.9 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 899 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 235 NE2 84.2 REMARK 620 3 AKG B 898 O2 166.4 96.1 REMARK 620 4 AKG B 898 O5 90.0 96.1 76.5 REMARK 620 5 BR B 902 BR 97.7 95.4 95.8 166.7 REMARK 620 6 HOH B1009 O 91.6 174.6 88.9 87.2 81.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DSU A 896 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 897 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 898 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FCT RELATED DB: PDB REMARK 900 RELATED ID: 2FCU RELATED DB: PDB DBREF 2FCV A 1 310 GB 5748808 AAD50521 1 310 DBREF 2FCV B 1 310 GB 5748808 AAD50521 1 310 SEQADV 2FCV GLY A -2 GB 5748808 CLONING ARTIFACT SEQADV 2FCV SER A -1 GB 5748808 CLONING ARTIFACT SEQADV 2FCV HIS A 0 GB 5748808 CLONING ARTIFACT SEQADV 2FCV GLY B -2 GB 5748808 CLONING ARTIFACT SEQADV 2FCV SER B -1 GB 5748808 CLONING ARTIFACT SEQADV 2FCV HIS B 0 GB 5748808 CLONING ARTIFACT SEQRES 1 A 313 GLY SER HIS MET SER LYS LYS PHE ALA LEU THR ALA GLU SEQRES 2 A 313 GLN ARG ALA SER PHE GLU LYS ASN GLY PHE ILE GLY PRO SEQRES 3 A 313 PHE ASP ALA TYR SER PRO GLU GLU MET LYS GLU THR TRP SEQRES 4 A 313 LYS ARG THR ARG LEU ARG LEU LEU ASP ARG SER ALA ALA SEQRES 5 A 313 ALA TYR GLN ASP LEU ASP ALA ILE SER GLY GLY THR ASN SEQRES 6 A 313 ILE ALA ASN TYR ASP ARG HIS LEU ASP ASP ASP PHE LEU SEQRES 7 A 313 ALA SER HIS ILE CYS ARG PRO GLU ILE CYS ASP ARG VAL SEQRES 8 A 313 GLU SER ILE LEU GLY PRO ASN VAL LEU CYS TRP ARG THR SEQRES 9 A 313 GLU PHE PHE PRO LYS TYR PRO GLY ASP GLU GLY THR ASP SEQRES 10 A 313 TRP HIS GLN ALA ASP THR PHE ALA ASN ALA SER GLY LYS SEQRES 11 A 313 PRO GLN ILE ILE TRP PRO GLU ASN GLU GLU PHE GLY GLY SEQRES 12 A 313 THR ILE THR VAL TRP THR ALA PHE THR ASP ALA ASN ILE SEQRES 13 A 313 ALA ASN GLY CYS LEU GLN PHE ILE PRO GLY THR GLN ASN SEQRES 14 A 313 SER MET ASN TYR ASP GLU THR LYS ARG MET THR TYR GLU SEQRES 15 A 313 PRO ASP ALA ASN ASN SER VAL VAL LYS ASP GLY VAL ARG SEQRES 16 A 313 ARG GLY PHE PHE GLY TYR ASP TYR ARG GLN LEU GLN ILE SEQRES 17 A 313 ASP GLU ASN TRP LYS PRO ASP GLU ALA SER ALA VAL PRO SEQRES 18 A 313 MET GLN MET LYS ALA GLY GLN PHE ILE ILE PHE TRP SER SEQRES 19 A 313 THR LEU MET HIS ALA SER TYR PRO HIS SER GLY GLU SER SEQRES 20 A 313 GLN GLU MET ARG MET GLY PHE ALA SER ARG TYR VAL PRO SEQRES 21 A 313 SER PHE VAL HIS VAL TYR PRO ASP SER ASP HIS ILE GLU SEQRES 22 A 313 GLU TYR GLY GLY ARG ILE SER LEU GLU LYS TYR GLY ALA SEQRES 23 A 313 VAL GLN VAL ILE GLY ASP GLU THR PRO GLU TYR ASN ARG SEQRES 24 A 313 LEU VAL THR HIS THR THR ARG GLY LYS LYS PHE GLU ALA SEQRES 25 A 313 VAL SEQRES 1 B 313 GLY SER HIS MET SER LYS LYS PHE ALA LEU THR ALA GLU SEQRES 2 B 313 GLN ARG ALA SER PHE GLU LYS ASN GLY PHE ILE GLY PRO SEQRES 3 B 313 PHE ASP ALA TYR SER PRO GLU GLU MET LYS GLU THR TRP SEQRES 4 B 313 LYS ARG THR ARG LEU ARG LEU LEU ASP ARG SER ALA ALA SEQRES 5 B 313 ALA TYR GLN ASP LEU ASP ALA ILE SER GLY GLY THR ASN SEQRES 6 B 313 ILE ALA ASN TYR ASP ARG HIS LEU ASP ASP ASP PHE LEU SEQRES 7 B 313 ALA SER HIS ILE CYS ARG PRO GLU ILE CYS ASP ARG VAL SEQRES 8 B 313 GLU SER ILE LEU GLY PRO ASN VAL LEU CYS TRP ARG THR SEQRES 9 B 313 GLU PHE PHE PRO LYS TYR PRO GLY ASP GLU GLY THR ASP SEQRES 10 B 313 TRP HIS GLN ALA ASP THR PHE ALA ASN ALA SER GLY LYS SEQRES 11 B 313 PRO GLN ILE ILE TRP PRO GLU ASN GLU GLU PHE GLY GLY SEQRES 12 B 313 THR ILE THR VAL TRP THR ALA PHE THR ASP ALA ASN ILE SEQRES 13 B 313 ALA ASN GLY CYS LEU GLN PHE ILE PRO GLY THR GLN ASN SEQRES 14 B 313 SER MET ASN TYR ASP GLU THR LYS ARG MET THR TYR GLU SEQRES 15 B 313 PRO ASP ALA ASN ASN SER VAL VAL LYS ASP GLY VAL ARG SEQRES 16 B 313 ARG GLY PHE PHE GLY TYR ASP TYR ARG GLN LEU GLN ILE SEQRES 17 B 313 ASP GLU ASN TRP LYS PRO ASP GLU ALA SER ALA VAL PRO SEQRES 18 B 313 MET GLN MET LYS ALA GLY GLN PHE ILE ILE PHE TRP SER SEQRES 19 B 313 THR LEU MET HIS ALA SER TYR PRO HIS SER GLY GLU SER SEQRES 20 B 313 GLN GLU MET ARG MET GLY PHE ALA SER ARG TYR VAL PRO SEQRES 21 B 313 SER PHE VAL HIS VAL TYR PRO ASP SER ASP HIS ILE GLU SEQRES 22 B 313 GLU TYR GLY GLY ARG ILE SER LEU GLU LYS TYR GLY ALA SEQRES 23 B 313 VAL GLN VAL ILE GLY ASP GLU THR PRO GLU TYR ASN ARG SEQRES 24 B 313 LEU VAL THR HIS THR THR ARG GLY LYS LYS PHE GLU ALA SEQRES 25 B 313 VAL HET FE2 A 900 1 HET BR A 901 1 HET BR A 903 1 HET DSU A 896 34 HET AKG A 897 10 HET FE2 B 899 1 HET BR B 902 1 HET BR B 904 1 HET AKG B 898 10 HETNAM FE2 FE (II) ION HETNAM BR BROMIDE ION HETNAM DSU ((2R,3S,4S,5S)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)-5-((2R, HETNAM 2 DSU 3S,4S,5S,6R)-3,4,5-TRIHYDROXY-6-METHOXY-TETRAHYDRO-2H- HETNAM 3 DSU PYRAN-2-YLOXY)-TETRAHYDROFURAN-2-YL)METHYL NONANOATE HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 3 FE2 2(FE 2+) FORMUL 4 BR 4(BR 1-) FORMUL 6 DSU C22 H40 O12 FORMUL 7 AKG 2(C5 H6 O5) FORMUL 12 HOH *465(H2 O) HELIX 1 1 THR A 8 GLY A 19 1 12 HELIX 2 2 SER A 28 LEU A 44 1 17 HELIX 3 3 THR A 61 TYR A 66 5 6 HELIX 4 4 ASP A 67 ASP A 71 5 5 HELIX 5 5 ASP A 72 ILE A 79 1 8 HELIX 6 6 ARG A 81 GLY A 93 1 13 HELIX 7 7 ASN A 152 GLY A 156 5 5 HELIX 8 8 ASP A 199 GLN A 204 5 6 HELIX 9 9 ASP A 212 ALA A 216 5 5 HELIX 10 10 THR B 8 GLY B 19 1 12 HELIX 11 11 SER B 28 LEU B 43 1 16 HELIX 12 12 ASN B 62 TYR B 66 5 5 HELIX 13 13 ASP B 67 ASP B 71 5 5 HELIX 14 14 ASP B 72 ILE B 79 1 8 HELIX 15 15 ARG B 81 GLY B 93 1 13 HELIX 16 16 ASN B 152 GLY B 156 5 5 HELIX 17 17 ASP B 199 GLN B 204 5 6 HELIX 18 18 ASP B 212 ALA B 216 5 5 SHEET 1 A 6 PHE A 20 ASP A 25 0 SHEET 2 A 6 GLN A 225 TRP A 230 -1 O PHE A 226 N PHE A 24 SHEET 3 A 6 ILE A 142 ALA A 147 -1 N THR A 143 O PHE A 229 SHEET 4 A 6 ARG A 248 PRO A 257 -1 O SER A 253 N VAL A 144 SHEET 5 A 6 VAL A 96 LYS A 106 -1 N LEU A 97 O VAL A 256 SHEET 6 A 6 VAL A 284 ILE A 287 -1 O VAL A 284 N CYS A 98 SHEET 1 B 3 GLY A 112 THR A 113 0 SHEET 2 B 3 VAL A 191 GLY A 194 1 O ARG A 192 N GLY A 112 SHEET 3 B 3 VAL A 187 LYS A 188 -1 N LYS A 188 O VAL A 191 SHEET 1 C 2 ILE A 130 ILE A 131 0 SHEET 2 C 2 HIS A 261 VAL A 262 -1 O HIS A 261 N ILE A 131 SHEET 1 D 3 VAL A 217 MET A 219 0 SHEET 2 D 3 LEU A 158 PHE A 160 -1 N PHE A 160 O VAL A 217 SHEET 3 D 3 HIS A 235 SER A 237 -1 O ALA A 236 N GLN A 159 SHEET 1 E 2 HIS A 268 GLU A 271 0 SHEET 2 E 2 GLY A 274 SER A 277 -1 O ILE A 276 N ILE A 269 SHEET 1 F 6 PHE B 20 ASP B 25 0 SHEET 2 F 6 GLN B 225 TRP B 230 -1 O PHE B 226 N PHE B 24 SHEET 3 F 6 ILE B 142 ALA B 147 -1 N THR B 143 O PHE B 229 SHEET 4 F 6 ARG B 248 PRO B 257 -1 O SER B 253 N VAL B 144 SHEET 5 F 6 VAL B 96 LYS B 106 -1 N LEU B 97 O VAL B 256 SHEET 6 F 6 VAL B 284 ILE B 287 -1 O VAL B 284 N CYS B 98 SHEET 1 G 3 GLY B 112 THR B 113 0 SHEET 2 G 3 VAL B 191 GLY B 194 1 O ARG B 192 N GLY B 112 SHEET 3 G 3 VAL B 187 LYS B 188 -1 N LYS B 188 O VAL B 191 SHEET 1 H 2 ILE B 130 ILE B 131 0 SHEET 2 H 2 HIS B 261 VAL B 262 -1 O HIS B 261 N ILE B 131 SHEET 1 I 3 VAL B 217 MET B 219 0 SHEET 2 I 3 LEU B 158 ILE B 161 -1 N PHE B 160 O VAL B 217 SHEET 3 I 3 MET B 234 SER B 237 -1 O ALA B 236 N GLN B 159 SHEET 1 J 2 HIS B 268 GLU B 271 0 SHEET 2 J 2 GLY B 274 SER B 277 -1 O ILE B 276 N ILE B 269 LINK NE2 HIS A 116 FE FE2 A 900 1555 1555 2.15 LINK NE2 HIS A 235 FE FE2 A 900 1555 1555 2.26 LINK O2 AKG A 897 FE FE2 A 900 1555 1555 2.06 LINK O5 AKG A 897 FE FE2 A 900 1555 1555 2.20 LINK FE FE2 A 900 BR BR A 901 1555 1555 2.53 LINK FE FE2 A 900 O HOH A1068 1555 1555 2.26 LINK NE2 HIS B 116 FE FE2 B 899 1555 1555 2.17 LINK NE2 HIS B 235 FE FE2 B 899 1555 1555 2.21 LINK O2 AKG B 898 FE FE2 B 899 1555 1555 2.12 LINK O5 AKG B 898 FE FE2 B 899 1555 1555 2.19 LINK FE FE2 B 899 BR BR B 902 1555 1555 2.52 LINK FE FE2 B 899 O HOH B1009 1555 1555 2.20 CISPEP 1 GLY A 22 PRO A 23 0 2.82 CISPEP 2 GLY B 22 PRO B 23 0 2.90 SITE 1 AC1 5 HIS B 116 HIS B 235 AKG B 898 BR B 902 SITE 2 AC1 5 HOH B1009 SITE 1 AC2 5 HIS A 116 HIS A 235 AKG A 897 BR A 901 SITE 2 AC2 5 HOH A1068 SITE 1 AC3 5 HIS A 116 HIS A 235 AKG A 897 FE2 A 900 SITE 2 AC3 5 HOH A 915 SITE 1 AC4 4 HIS B 116 HIS B 235 AKG B 898 FE2 B 899 SITE 1 AC5 1 ASP A 212 SITE 1 AC6 1 ASP B 212 SITE 1 AC7 13 LEU A 92 PRO A 94 GLU A 137 PHE A 138 SITE 2 AC7 13 GLY A 139 GLN A 165 ASN A 166 TRP A 230 SITE 3 AC7 13 THR A 232 HOH A1050 HOH A1094 HOH A1096 SITE 4 AC7 13 HOH A1167 SITE 1 AC8 15 PHE A 104 LYS A 106 THR A 113 HIS A 116 SITE 2 AC8 15 THR A 143 TRP A 145 LEU A 158 HIS A 235 SITE 3 AC8 15 SER A 237 ARG A 248 ALA A 252 ARG A 254 SITE 4 AC8 15 FE2 A 900 BR A 901 HOH A 915 SITE 1 AC9 16 PHE B 104 LYS B 106 THR B 113 HIS B 116 SITE 2 AC9 16 THR B 143 TRP B 145 LEU B 158 HIS B 235 SITE 3 AC9 16 SER B 237 ARG B 248 ALA B 252 ARG B 254 SITE 4 AC9 16 FE2 B 899 BR B 902 HOH B 926 HOH B1009 CRYST1 57.120 89.350 125.060 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008000 0.00000