HEADER RNA 13-DEC-05 2FCY TITLE HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 DIS RNA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN SUBTYPE F HIV-1 KEYWDS HIV-1, RNA, AMINOGLYCOSIDE, ANTIBIOTICS EXPDTA X-RAY DIFFRACTION AUTHOR E.ENNIFAR,J.C.PAILLART,R.MARQUET,P.DUMAS REVDAT 3 30-AUG-23 2FCY 1 REMARK LINK REVDAT 2 24-FEB-09 2FCY 1 VERSN REVDAT 1 16-MAY-06 2FCY 0 JRNL AUTH E.ENNIFAR,J.C.PAILLART,A.BODLENNER,P.WALTER,J.-M.WEIBEL, JRNL AUTH 2 A.-M.AUBERTIN,P.PALE,P.DUMAS,R.MARQUET JRNL TITL TARGETING THE DIMERIZATION INITIATION SITE OF HIV-1 RNA WITH JRNL TITL 2 AMINOGLYCOSIDES: FROM CRYSTAL TO CELL. JRNL REF NUCLEIC ACIDS RES. V. 34 2328 2006 JRNL REFN ISSN 0305-1048 JRNL PMID 16679451 JRNL DOI 10.1093/NAR/GKL317 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 787754.230 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 7669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 644 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1095 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 101 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 980 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.74000 REMARK 3 B22 (A**2) : -4.67000 REMARK 3 B33 (A**2) : 0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 13.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.430 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 35.29 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : BRU_REP.PARAM REMARK 3 PARAMETER FILE 5 : NEOMYCINE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : WATER.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : BRU.TOP REMARK 3 TOPOLOGY FILE 5 : NEOMYCINE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000035729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23100 REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2FCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, KCL, MGCL2, NA CACODYLATE PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.08250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.08250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 13.55250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.85100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 13.55250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.85100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.08250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 13.55250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.85100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.08250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 13.55250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.85100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 A B 9 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1004 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5BU A 3 O4 REMARK 620 2 G A 4 O6 72.8 REMARK 620 3 HOH A1016 O 149.5 78.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1003 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 8 OP1 REMARK 620 2 A A 9 OP2 90.3 REMARK 620 3 NMY A1001 O4 66.9 105.7 REMARK 620 4 HOH A1008 O 118.4 137.8 64.8 REMARK 620 5 HOH A1031 O 81.8 90.3 144.4 122.0 REMARK 620 6 HOH A1033 O 121.5 58.9 75.2 79.2 138.7 REMARK 620 7 HOH A1036 O 64.5 153.9 71.9 66.0 79.8 139.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1005 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 8 O4' REMARK 620 2 A B 9 N1 81.8 REMARK 620 3 CL B2004 CL 138.8 82.3 REMARK 620 4 HOH B2007 O 77.0 62.5 62.0 REMARK 620 5 HOH B2011 O 143.5 71.0 61.8 109.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B2003 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5BU B 3 BR REMARK 620 2 5BU B 3 O4 56.8 REMARK 620 3 G B 4 O6 126.5 81.6 REMARK 620 4 HOH B2022 O 68.9 91.1 81.2 REMARK 620 5 HOH B2032 O 148.4 146.1 84.6 117.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B2002 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 8 OP1 REMARK 620 2 A B 9 OP2 79.7 REMARK 620 3 NMY B2001 O4 66.3 118.0 REMARK 620 4 HOH B2019 O 113.0 66.2 81.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NMY A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NMY B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 32 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FCX RELATED DB: PDB REMARK 900 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEAMINE REMARK 900 RELATED ID: 1XP7 RELATED DB: PDB REMARK 900 SUBTYPE F HIV-1 DIS KISSING-LOOP REMARK 900 RELATED ID: 1Y3S RELATED DB: PDB REMARK 900 SUBTYPE F HIV-1 DIS KISSING-LOOP REMARK 900 RELATED ID: 1FCZ RELATED DB: PDB REMARK 900 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH RIBOSTAMYCIN REMARK 900 RELATED ID: 2FD0 RELATED DB: PDB REMARK 900 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH LIVIDOMYCIN DBREF 2FCY A 1 23 PDB 2FCY 2FCY 1 23 DBREF 2FCY B 1 23 PDB 2FCY 2FCY 1 23 SEQRES 1 A 23 C U 5BU G C U G A A G U G C SEQRES 2 A 23 A C A C A G C A A G SEQRES 1 B 23 C U 5BU G C U G A A G U G C SEQRES 2 B 23 A C A C A G C A A G MODRES 2FCY 5BU A 3 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 2FCY 5BU B 3 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE HET 5BU A 3 21 HET 5BU B 3 21 HET NMY A1001 42 HET K A1002 1 HET K A1003 1 HET K A1004 1 HET K A1005 1 HET NMY B2001 42 HET K B2002 1 HET K B2003 1 HET CL B2004 1 HET SO4 B 32 5 HETNAM 5BU 5-BROMO-URIDINE-5'-MONOPHOSPHATE HETNAM NMY NEOMYCIN HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN NMY MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN FORMUL 1 5BU 2(C9 H12 BR N2 O9 P) FORMUL 3 NMY 2(C23 H46 N6 O13) FORMUL 4 K 6(K 1+) FORMUL 11 CL CL 1- FORMUL 12 SO4 O4 S 2- FORMUL 13 HOH *74(H2 O) LINK O3' U A 2 P 5BU A 3 1555 1555 1.60 LINK O3' 5BU A 3 P G A 4 1555 1555 1.60 LINK O3' U B 2 P 5BU B 3 1555 1555 1.62 LINK O3' 5BU B 3 P G B 4 1555 1555 1.61 LINK O4 5BU A 3 K K A1004 1555 1555 2.80 LINK O6 G A 4 K K A1004 1555 1555 2.77 LINK N1 A A 8 K K A1002 1555 1555 2.71 LINK OP1 A A 8 K K A1003 1555 1555 2.64 LINK O4' A A 8 K K A1005 1555 1555 3.18 LINK OP2 A A 9 K K A1003 1555 1555 3.01 LINK O4 NMY A1001 K K A1003 1555 1555 3.05 LINK K K A1003 O HOH A1008 1555 1555 3.25 LINK K K A1003 O HOH A1031 1555 1555 3.22 LINK K K A1003 O HOH A1033 1555 1555 2.98 LINK K K A1003 O HOH A1036 1555 1555 3.28 LINK K K A1004 O HOH A1016 1555 1555 2.67 LINK K K A1005 N1 A B 9 1555 3555 3.29 LINK K K A1005 CL CL B2004 1555 3555 3.00 LINK K K A1005 O HOH B2007 1555 3555 3.17 LINK K K A1005 O HOH B2011 1555 3555 3.59 LINK BR 5BU B 3 K K B2003 1555 1555 3.71 LINK O4 5BU B 3 K K B2003 1555 1555 2.79 LINK O6 G B 4 K K B2003 1555 1555 2.75 LINK OP1 A B 8 K K B2002 1555 1555 2.91 LINK OP2 A B 9 K K B2002 1555 1555 2.84 LINK O4 NMY B2001 K K B2002 1555 1555 2.85 LINK K K B2002 O HOH B2019 1555 1555 2.86 LINK K K B2003 O HOH B2022 1555 1555 2.46 LINK K K B2003 O HOH B2032 1555 1555 3.23 SITE 1 AC1 20 U A 6 G A 7 A A 8 A A 9 SITE 2 AC1 20 C A 13 A A 14 C A 15 A A 16 SITE 3 AC1 20 K A1003 HOH A1010 HOH A1012 HOH A1022 SITE 4 AC1 20 HOH A1023 HOH A1025 HOH A1033 HOH A1037 SITE 5 AC1 20 G B 10 U B 11 HOH B2023 HOH B2035 SITE 1 AC2 16 G A 10 U A 11 HOH A1035 G B 7 SITE 2 AC2 16 A B 8 C B 13 A B 14 C B 15 SITE 3 AC2 16 A B 16 K B2002 HOH B2008 HOH B2019 SITE 4 AC2 16 HOH B2024 HOH B2028 HOH B2034 HOH B2035 SITE 1 AC3 1 A A 8 SITE 1 AC4 4 A A 8 A A 9 NMY A1001 HOH A1033 SITE 1 AC5 3 5BU A 3 G A 4 HOH A1016 SITE 1 AC6 3 A A 8 A B 9 CL B2004 SITE 1 AC7 4 A B 8 A B 9 NMY B2001 HOH B2019 SITE 1 AC8 3 5BU B 3 G B 4 HOH B2022 SITE 1 AC9 2 K A1005 A B 8 SITE 1 BC1 3 C B 1 U B 2 HOH B2027 CRYST1 27.105 113.702 96.165 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036894 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010399 0.00000