data_2FD0 # _entry.id 2FD0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FD0 pdb_00002fd0 10.2210/pdb2fd0/pdb NDB DR0026 ? ? RCSB RCSB035731 ? ? WWPDB D_1000035731 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FCX 'HIV-1 DIS kissing-loop in complex with Neamine' unspecified PDB 2FCY 'HIV-1 DIS kissing-loop in complex with Neomycin' unspecified PDB 2FCZ 'HIV-1 DIS kissing-loop in complex with Ribostamycin' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FD0 _pdbx_database_status.recvd_initial_deposition_date 2005-12-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Paillart, J.C.' 2 'Marquet, R.' 3 'Dumas, P.' 4 # _citation.id primary _citation.title 'Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 34 _citation.page_first 2328 _citation.page_last 2339 _citation.year 2006 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16679451 _citation.pdbx_database_id_DOI 10.1093/nar/gkl317 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ennifar, E.' 1 ? primary 'Paillart, J.C.' 2 ? primary 'Bodlenner, A.' 3 ? primary 'Walter, P.' 4 ? primary 'Weibel, J.-M.' 5 ? primary 'Aubertin, A.-M.' 6 ? primary 'Pale, P.' 7 ? primary 'Dumas, P.' 8 ? primary 'Marquet, R.' 9 ? # _cell.entry_id 2FD0 _cell.length_a 27.137 _cell.length_b 115.335 _cell.length_c 95.254 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FD0 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HIV-1 DIS RNA' 7465.368 2 ? ? ? ? 2 non-polymer syn ;(2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL ; 761.770 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 90 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CU(5BU)GCUGAAGUGCACACAGCAAG' _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAAGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 5BU n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in subtype F HIV-1' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2FD0 _struct_ref.pdbx_db_accession 2FD0 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2FD0 A 1 ? 23 ? 2FD0 1 ? 23 ? 1 23 2 1 2FD0 B 1 ? 23 ? 2FD0 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LIV non-polymer . ;(2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL ; ;LIVIDOMYCIN A; O-2-AMINO-2,3-DIDEOXY-ALPHA-D-GLUCOPYRANOSYL-(1,4)-O-[BETA-D-MANNOPYRANOSYL-(1,4)-O-2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPY RANOSYL-(1,3)-BETA-D-RIBOFURANOSYL-(1,5)-2-DEOXY-D-STREPTAMINE ; 'C29 H55 N5 O18' 761.770 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2FD0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'MPD, KCl, MgCl2, Na Cacodylate pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-11-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91946 # _reflns.entry_id 2FD0 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40 _reflns.d_resolution_high 1.8 _reflns.number_obs 26564 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI 26.4 _reflns.B_iso_Wilson_estimate 33.8 _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.273 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2FD0 _refine.ls_number_reflns_obs 26457 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1031896.48 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF 1031896.48 _refine.ls_d_res_low 9.94 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.245 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.245 _refine.ls_R_factor_R_free 0.245 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.8 _refine.ls_number_reflns_R_free 1542 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 41.3 _refine.aniso_B[1][1] 0.11 _refine.aniso_B[2][2] 2.32 _refine.aniso_B[3][3] -2.43 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4016 _refine.solvent_model_param_bsol 49.2637 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2FCY _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2FD0 _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.29 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.28 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 980 _refine_hist.pdbx_number_atoms_ligand 109 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 1179 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 9.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 8.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.40 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 4233 _refine_ls_shell.R_factor_R_work 0.357 _refine_ls_shell.percent_reflns_obs 98.3 _refine_ls_shell.R_factor_R_free 0.391 _refine_ls_shell.R_factor_R_free_error 0.040 _refine_ls_shell.percent_reflns_R_free 2.2 _refine_ls_shell.number_reflns_R_free 97 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water_rep.param water.top 'X-RAY DIFFRACTION' 2 luc.param dna-rna.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 bru_rep.param bru.top 'X-RAY DIFFRACTION' 5 lividomycin.param lividomycin.top 'X-RAY DIFFRACTION' # _struct.entry_id 2FD0 _struct.title 'HIV-1 DIS kissing-loop in complex with lividomycin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FD0 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, RNA, aminoglycoside, antibiotics' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 3 ? J N N 5 ? K N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 2 "O3'" ? ? ? 1_555 A 5BU 3 P ? ? A U 2 A 5BU 3 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? A 5BU 3 "O3'" ? ? ? 1_555 A G 4 P ? ? A 5BU 3 A G 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale3 covale both ? B U 2 "O3'" ? ? ? 1_555 B 5BU 3 P ? ? B U 2 B 5BU 3 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale both ? B 5BU 3 "O3'" ? ? ? 1_555 B G 4 P ? ? B 5BU 3 B G 4 1_555 ? ? ? ? ? ? ? 1.608 ? ? metalc1 metalc ? ? A 5BU 3 O4 ? ? ? 1_555 D K . K ? ? A 5BU 3 A K 1002 1_555 ? ? ? ? ? ? ? 3.005 ? ? metalc2 metalc ? ? A G 4 O6 ? ? ? 1_555 D K . K ? ? A G 4 A K 1002 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc3 metalc ? ? A G 23 O6 ? ? ? 1_555 E K . K ? ? A G 23 A K 44 1_555 ? ? ? ? ? ? ? 2.840 ? ? metalc4 metalc ? ? E K . K ? ? ? 1_555 H CL . CL ? ? A K 44 B CL 66 5_555 ? ? ? ? ? ? ? 3.169 ? ? metalc5 metalc ? ? D K . K ? ? ? 1_555 J HOH . O ? ? A K 1002 A HOH 1024 1_555 ? ? ? ? ? ? ? 2.560 ? ? metalc6 metalc ? ? D K . K ? ? ? 1_555 J HOH . O ? ? A K 1002 A HOH 1042 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc7 metalc ? ? B 5BU 3 OP1 ? ? ? 1_555 I K . K ? ? B 5BU 3 B K 90 1_555 ? ? ? ? ? ? ? 2.847 ? ? metalc8 metalc ? ? B 5BU 3 OP1 ? ? ? 4_545 I K . K ? ? B 5BU 3 B K 90 1_555 ? ? ? ? ? ? ? 2.929 ? ? metalc9 metalc ? ? B 5BU 3 O4 ? ? ? 1_555 G K . K ? ? B 5BU 3 B K 2002 1_555 ? ? ? ? ? ? ? 2.822 ? ? metalc10 metalc ? ? B G 4 O6 ? ? ? 1_555 G K . K ? ? B G 4 B K 2002 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc11 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 90 B HOH 2008 1_555 ? ? ? ? ? ? ? 3.506 ? ? metalc12 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 90 B HOH 2008 4_545 ? ? ? ? ? ? ? 3.520 ? ? metalc13 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 90 B HOH 2021 1_555 ? ? ? ? ? ? ? 2.612 ? ? metalc14 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 90 B HOH 2021 4_545 ? ? ? ? ? ? ? 2.593 ? ? metalc15 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 90 B HOH 2032 1_555 ? ? ? ? ? ? ? 3.661 ? ? metalc16 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 90 B HOH 2032 4_545 ? ? ? ? ? ? ? 3.662 ? ? metalc17 metalc ? ? G K . K ? ? ? 1_555 K HOH . O ? ? B K 2002 B HOH 2028 1_555 ? ? ? ? ? ? ? 2.557 ? ? metalc18 metalc ? ? G K . K ? ? ? 1_555 K HOH . O ? ? B K 2002 B HOH 2033 1_555 ? ? ? ? ? ? ? 2.530 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 22 N1 ? ? A U 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 22 N6 ? ? A U 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5BU 3 N3 ? ? ? 1_555 A A 21 N1 ? ? A 5BU 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 5BU 3 O4 ? ? ? 1_555 A A 21 N6 ? ? A 5BU 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? B U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? B U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B 5BU 3 N3 ? ? ? 1_555 B A 21 N1 ? ? B 5BU 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B 5BU 3 O4 ? ? ? 1_555 B A 21 N6 ? ? B 5BU 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A LIV 1001 ? 18 'BINDING SITE FOR RESIDUE LIV A 1001' AC2 Software B LIV 2001 ? 21 'BINDING SITE FOR RESIDUE LIV B 2001' AC3 Software B K 2002 ? 4 'BINDING SITE FOR RESIDUE K B 2002' AC4 Software A K 1002 ? 4 'BINDING SITE FOR RESIDUE K A 1002' AC5 Software A K 44 ? 3 'BINDING SITE FOR RESIDUE K A 44' AC6 Software B CL 66 ? 2 'BINDING SITE FOR RESIDUE CL B 66' AC7 Software B K 90 ? 4 'BINDING SITE FOR RESIDUE K B 90' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 G A 4 ? G A 4 . ? 1_555 ? 2 AC1 18 G A 7 ? G A 7 . ? 1_555 ? 3 AC1 18 A A 8 ? A A 8 . ? 1_555 ? 4 AC1 18 A A 9 ? A A 9 . ? 1_555 ? 5 AC1 18 A A 14 ? A A 14 . ? 1_555 ? 6 AC1 18 C A 15 ? C A 15 . ? 1_555 ? 7 AC1 18 A A 16 ? A A 16 . ? 1_555 ? 8 AC1 18 HOH J . ? HOH A 1004 . ? 1_555 ? 9 AC1 18 HOH J . ? HOH A 1006 . ? 1_555 ? 10 AC1 18 HOH J . ? HOH A 1013 . ? 1_555 ? 11 AC1 18 HOH J . ? HOH A 1014 . ? 1_555 ? 12 AC1 18 HOH J . ? HOH A 1016 . ? 1_555 ? 13 AC1 18 HOH J . ? HOH A 1019 . ? 1_555 ? 14 AC1 18 HOH J . ? HOH A 1028 . ? 1_555 ? 15 AC1 18 HOH J . ? HOH A 1033 . ? 1_555 ? 16 AC1 18 G B 10 ? G B 10 . ? 1_555 ? 17 AC1 18 U B 11 ? U B 11 . ? 1_555 ? 18 AC1 18 HOH K . ? HOH B 2007 . ? 1_555 ? 19 AC2 21 G A 10 ? G A 10 . ? 1_555 ? 20 AC2 21 U A 11 ? U A 11 . ? 1_555 ? 21 AC2 21 G A 12 ? G A 12 . ? 1_555 ? 22 AC2 21 HOH J . ? HOH A 1028 . ? 1_555 ? 23 AC2 21 G B 4 ? G B 4 . ? 1_555 ? 24 AC2 21 C B 5 ? C B 5 . ? 1_555 ? 25 AC2 21 G B 7 ? G B 7 . ? 1_555 ? 26 AC2 21 A B 8 ? A B 8 . ? 1_555 ? 27 AC2 21 C B 13 ? C B 13 . ? 1_555 ? 28 AC2 21 A B 14 ? A B 14 . ? 1_555 ? 29 AC2 21 C B 15 ? C B 15 . ? 1_555 ? 30 AC2 21 A B 16 ? A B 16 . ? 1_555 ? 31 AC2 21 HOH K . ? HOH B 2004 . ? 1_555 ? 32 AC2 21 HOH K . ? HOH B 2007 . ? 1_555 ? 33 AC2 21 HOH K . ? HOH B 2016 . ? 1_555 ? 34 AC2 21 HOH K . ? HOH B 2018 . ? 1_555 ? 35 AC2 21 HOH K . ? HOH B 2019 . ? 1_555 ? 36 AC2 21 HOH K . ? HOH B 2020 . ? 1_555 ? 37 AC2 21 HOH K . ? HOH B 2038 . ? 1_555 ? 38 AC2 21 HOH K . ? HOH B 2039 . ? 1_555 ? 39 AC2 21 HOH K . ? HOH B 2048 . ? 1_555 ? 40 AC3 4 5BU B 3 ? 5BU B 3 . ? 1_555 ? 41 AC3 4 G B 4 ? G B 4 . ? 1_555 ? 42 AC3 4 HOH K . ? HOH B 2028 . ? 1_555 ? 43 AC3 4 HOH K . ? HOH B 2033 . ? 1_555 ? 44 AC4 4 5BU A 3 ? 5BU A 3 . ? 1_555 ? 45 AC4 4 G A 4 ? G A 4 . ? 1_555 ? 46 AC4 4 HOH J . ? HOH A 1024 . ? 1_555 ? 47 AC4 4 HOH J . ? HOH A 1042 . ? 1_555 ? 48 AC5 3 G A 23 ? G A 23 . ? 1_555 ? 49 AC5 3 C B 1 ? C B 1 . ? 5_555 ? 50 AC5 3 CL H . ? CL B 66 . ? 5_555 ? 51 AC6 2 K E . ? K A 44 . ? 5_445 ? 52 AC6 2 C B 1 ? C B 1 . ? 1_555 ? 53 AC7 4 5BU B 3 ? 5BU B 3 . ? 1_555 ? 54 AC7 4 5BU B 3 ? 5BU B 3 . ? 4_545 ? 55 AC7 4 HOH K . ? HOH B 2021 . ? 1_555 ? 56 AC7 4 HOH K . ? HOH B 2021 . ? 4_545 ? # _database_PDB_matrix.entry_id 2FD0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FD0 _atom_sites.fract_transf_matrix[1][1] 0.036850 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008670 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010498 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CL K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 5BU 3 3 3 5BU 5BU A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 U 2 2 2 U U B . n B 1 3 5BU 3 3 3 5BU 5BU B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 A 9 9 9 A A B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 A 18 18 18 A A B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LIV 1 1001 1001 LIV LIV A . D 3 K 1 1002 3 K K A . E 3 K 1 44 44 K K A . F 2 LIV 1 2001 2001 LIV LIV B . G 3 K 1 2002 2 K K B . H 4 CL 1 66 66 CL CL B . I 3 K 1 90 90 K K B . J 5 HOH 1 1003 5 HOH HOH A . J 5 HOH 2 1004 6 HOH HOH A . J 5 HOH 3 1005 7 HOH HOH A . J 5 HOH 4 1006 9 HOH HOH A . J 5 HOH 5 1007 13 HOH HOH A . J 5 HOH 6 1008 14 HOH HOH A . J 5 HOH 7 1009 15 HOH HOH A . J 5 HOH 8 1010 16 HOH HOH A . J 5 HOH 9 1011 17 HOH HOH A . J 5 HOH 10 1012 18 HOH HOH A . J 5 HOH 11 1013 21 HOH HOH A . J 5 HOH 12 1014 23 HOH HOH A . J 5 HOH 13 1015 25 HOH HOH A . J 5 HOH 14 1016 27 HOH HOH A . J 5 HOH 15 1017 28 HOH HOH A . J 5 HOH 16 1018 30 HOH HOH A . J 5 HOH 17 1019 31 HOH HOH A . J 5 HOH 18 1020 34 HOH HOH A . J 5 HOH 19 1021 37 HOH HOH A . J 5 HOH 20 1022 43 HOH HOH A . J 5 HOH 21 1023 50 HOH HOH A . J 5 HOH 22 1024 52 HOH HOH A . J 5 HOH 23 1025 53 HOH HOH A . J 5 HOH 24 1026 54 HOH HOH A . J 5 HOH 25 1027 57 HOH HOH A . J 5 HOH 26 1028 58 HOH HOH A . J 5 HOH 27 1029 60 HOH HOH A . J 5 HOH 28 1030 64 HOH HOH A . J 5 HOH 29 1031 68 HOH HOH A . J 5 HOH 30 1032 69 HOH HOH A . J 5 HOH 31 1033 73 HOH HOH A . J 5 HOH 32 1034 75 HOH HOH A . J 5 HOH 33 1035 76 HOH HOH A . J 5 HOH 34 1036 79 HOH HOH A . J 5 HOH 35 1037 80 HOH HOH A . J 5 HOH 36 1038 81 HOH HOH A . J 5 HOH 37 1039 82 HOH HOH A . J 5 HOH 38 1040 83 HOH HOH A . J 5 HOH 39 1041 85 HOH HOH A . J 5 HOH 40 1042 86 HOH HOH A . J 5 HOH 41 1043 87 HOH HOH A . J 5 HOH 42 1044 89 HOH HOH A . J 5 HOH 43 1045 91 HOH HOH A . J 5 HOH 44 1046 92 HOH HOH A . K 5 HOH 1 2003 1 HOH HOH B . K 5 HOH 2 2004 4 HOH HOH B . K 5 HOH 3 2005 8 HOH HOH B . K 5 HOH 4 2006 10 HOH HOH B . K 5 HOH 5 2007 11 HOH HOH B . K 5 HOH 6 2008 12 HOH HOH B . K 5 HOH 7 2009 20 HOH HOH B . K 5 HOH 8 2010 22 HOH HOH B . K 5 HOH 9 2011 24 HOH HOH B . K 5 HOH 10 2012 26 HOH HOH B . K 5 HOH 11 2013 29 HOH HOH B . K 5 HOH 12 2014 32 HOH HOH B . K 5 HOH 13 2015 33 HOH HOH B . K 5 HOH 14 2016 35 HOH HOH B . K 5 HOH 15 2017 36 HOH HOH B . K 5 HOH 16 2018 38 HOH HOH B . K 5 HOH 17 2019 39 HOH HOH B . K 5 HOH 18 2020 40 HOH HOH B . K 5 HOH 19 2021 41 HOH HOH B . K 5 HOH 20 2022 42 HOH HOH B . K 5 HOH 21 2023 45 HOH HOH B . K 5 HOH 22 2024 46 HOH HOH B . K 5 HOH 23 2025 47 HOH HOH B . K 5 HOH 24 2026 48 HOH HOH B . K 5 HOH 25 2027 49 HOH HOH B . K 5 HOH 26 2028 51 HOH HOH B . K 5 HOH 27 2029 55 HOH HOH B . K 5 HOH 28 2030 56 HOH HOH B . K 5 HOH 29 2031 59 HOH HOH B . K 5 HOH 30 2032 61 HOH HOH B . K 5 HOH 31 2033 62 HOH HOH B . K 5 HOH 32 2034 63 HOH HOH B . K 5 HOH 33 2035 65 HOH HOH B . K 5 HOH 34 2036 67 HOH HOH B . K 5 HOH 35 2037 70 HOH HOH B . K 5 HOH 36 2038 71 HOH HOH B . K 5 HOH 37 2039 72 HOH HOH B . K 5 HOH 38 2040 74 HOH HOH B . K 5 HOH 39 2041 77 HOH HOH B . K 5 HOH 40 2042 78 HOH HOH B . K 5 HOH 41 2043 84 HOH HOH B . K 5 HOH 42 2044 88 HOH HOH B . K 5 HOH 43 2045 93 HOH HOH B . K 5 HOH 44 2046 94 HOH HOH B . K 5 HOH 45 2047 95 HOH HOH B . K 5 HOH 46 2048 96 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5BU 3 A 5BU 3 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 2 B 5BU 3 B 5BU 3 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B K 90 ? I K . 2 1 B HOH 2032 ? K HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A 5BU 3 ? A 5BU 3 ? 1_555 K ? D K . ? A K 1002 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 72.6 ? 2 O4 ? A 5BU 3 ? A 5BU 3 ? 1_555 K ? D K . ? A K 1002 ? 1_555 O ? J HOH . ? A HOH 1024 ? 1_555 146.0 ? 3 O6 ? A G 4 ? A G 4 ? 1_555 K ? D K . ? A K 1002 ? 1_555 O ? J HOH . ? A HOH 1024 ? 1_555 90.8 ? 4 O4 ? A 5BU 3 ? A 5BU 3 ? 1_555 K ? D K . ? A K 1002 ? 1_555 O ? J HOH . ? A HOH 1042 ? 1_555 93.2 ? 5 O6 ? A G 4 ? A G 4 ? 1_555 K ? D K . ? A K 1002 ? 1_555 O ? J HOH . ? A HOH 1042 ? 1_555 99.0 ? 6 O ? J HOH . ? A HOH 1024 ? 1_555 K ? D K . ? A K 1002 ? 1_555 O ? J HOH . ? A HOH 1042 ? 1_555 119.2 ? 7 O6 ? A G 23 ? A G 23 ? 1_555 K ? E K . ? A K 44 ? 1_555 CL ? H CL . ? B CL 66 ? 5_555 114.4 ? 8 OP1 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? I K . ? B K 90 ? 1_555 OP1 ? B 5BU 3 ? B 5BU 3 ? 4_545 103.1 ? 9 OP1 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2008 ? 1_555 92.5 ? 10 OP1 ? B 5BU 3 ? B 5BU 3 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2008 ? 1_555 54.5 ? 11 OP1 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2008 ? 4_545 54.8 ? 12 OP1 ? B 5BU 3 ? B 5BU 3 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2008 ? 4_545 90.8 ? 13 O ? K HOH . ? B HOH 2008 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2008 ? 4_545 127.4 ? 14 OP1 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 1_555 146.2 ? 15 OP1 ? B 5BU 3 ? B 5BU 3 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 1_555 85.8 ? 16 O ? K HOH . ? B HOH 2008 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 1_555 66.1 ? 17 O ? K HOH . ? B HOH 2008 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 1_555 158.9 ? 18 OP1 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 4_545 87.9 ? 19 OP1 ? B 5BU 3 ? B 5BU 3 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 4_545 142.1 ? 20 O ? K HOH . ? B HOH 2008 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 4_545 162.6 ? 21 O ? K HOH . ? B HOH 2008 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 4_545 66.0 ? 22 O ? K HOH . ? B HOH 2021 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2021 ? 4_545 105.1 ? 23 OP1 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 1_555 51.6 ? 24 OP1 ? B 5BU 3 ? B 5BU 3 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 1_555 51.5 ? 25 O ? K HOH . ? B HOH 2008 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 1_555 63.6 ? 26 O ? K HOH . ? B HOH 2008 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 1_555 63.9 ? 27 O ? K HOH . ? B HOH 2021 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 1_555 127.0 ? 28 O ? K HOH . ? B HOH 2021 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 1_555 127.9 ? 29 OP1 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 4_545 51.8 ? 30 OP1 ? B 5BU 3 ? B 5BU 3 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 4_545 51.3 ? 31 O ? K HOH . ? B HOH 2008 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 4_545 64.0 ? 32 O ? K HOH . ? B HOH 2008 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 4_545 63.5 ? 33 O ? K HOH . ? B HOH 2021 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 4_545 127.2 ? 34 O ? K HOH . ? B HOH 2021 ? 4_545 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 4_545 127.6 ? 35 O ? K HOH . ? B HOH 2032 ? 1_555 K ? I K . ? B K 90 ? 1_555 O ? K HOH . ? B HOH 2032 ? 4_545 0.6 ? 36 O4 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? G K . ? B K 2002 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 78.6 ? 37 O4 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? G K . ? B K 2002 ? 1_555 O ? K HOH . ? B HOH 2028 ? 1_555 86.8 ? 38 O6 ? B G 4 ? B G 4 ? 1_555 K ? G K . ? B K 2002 ? 1_555 O ? K HOH . ? B HOH 2028 ? 1_555 85.5 ? 39 O4 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? G K . ? B K 2002 ? 1_555 O ? K HOH . ? B HOH 2033 ? 1_555 143.0 ? 40 O6 ? B G 4 ? B G 4 ? 1_555 K ? G K . ? B K 2002 ? 1_555 O ? K HOH . ? B HOH 2033 ? 1_555 75.2 ? 41 O ? K HOH . ? B HOH 2028 ? 1_555 K ? G K . ? B K 2002 ? 1_555 O ? K HOH . ? B HOH 2033 ? 1_555 116.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-16 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' entity 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' pdbx_struct_conn_angle 9 4 'Structure model' struct_conn 10 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.pdbx_synonyms' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_entity_nonpoly.name' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 24 4 'Structure model' '_pdbx_struct_conn_angle.value' 25 4 'Structure model' '_struct_conn.conn_type_id' 26 4 'Structure model' '_struct_conn.id' 27 4 'Structure model' '_struct_conn.pdbx_dist_value' 28 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr1_symmetry' 37 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 44 4 'Structure model' '_struct_conn.ptnr2_symmetry' 45 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 46 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 47 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 CL CL CL N N 107 G OP3 O N N 108 G P P N N 109 G OP1 O N N 110 G OP2 O N N 111 G "O5'" O N N 112 G "C5'" C N N 113 G "C4'" C N R 114 G "O4'" O N N 115 G "C3'" C N S 116 G "O3'" O N N 117 G "C2'" C N R 118 G "O2'" O N N 119 G "C1'" C N R 120 G N9 N Y N 121 G C8 C Y N 122 G N7 N Y N 123 G C5 C Y N 124 G C6 C N N 125 G O6 O N N 126 G N1 N N N 127 G C2 C N N 128 G N2 N N N 129 G N3 N N N 130 G C4 C Y N 131 G HOP3 H N N 132 G HOP2 H N N 133 G "H5'" H N N 134 G "H5''" H N N 135 G "H4'" H N N 136 G "H3'" H N N 137 G "HO3'" H N N 138 G "H2'" H N N 139 G "HO2'" H N N 140 G "H1'" H N N 141 G H8 H N N 142 G H1 H N N 143 G H21 H N N 144 G H22 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 K K K N N 149 LIV C11 C N S 150 LIV O11 O N N 151 LIV C21 C N R 152 LIV N21 N N N 153 LIV C31 C N N 154 LIV C41 C N S 155 LIV O41 O N N 156 LIV C51 C N R 157 LIV O51 O N N 158 LIV C61 C N N 159 LIV O61 O N N 160 LIV C12 C N R 161 LIV N12 N N N 162 LIV C62 C N S 163 LIV O62 O N N 164 LIV C52 C N R 165 LIV O52 O N N 166 LIV C42 C N R 167 LIV C32 C N S 168 LIV N32 N N N 169 LIV C22 C N N 170 LIV C13 C N S 171 LIV C23 C N R 172 LIV O23 O N N 173 LIV C33 C N S 174 LIV C43 C N R 175 LIV O43 O N N 176 LIV C53 C N N 177 LIV O53 O N N 178 LIV C44 C N S 179 LIV O44 O N N 180 LIV C34 C N R 181 LIV O34 O N N 182 LIV C24 C N R 183 LIV N24 N N N 184 LIV C14 C N R 185 LIV O33 O N N 186 LIV C54 C N S 187 LIV O54 O N N 188 LIV C64 C N N 189 LIV N64 N N N 190 LIV C15 C N R 191 LIV C25 C N S 192 LIV C35 C N S 193 LIV C45 C N S 194 LIV C55 C N R 195 LIV C65 C N N 196 LIV O25 O N N 197 LIV O35 O N N 198 LIV O45 O N N 199 LIV O55 O N N 200 LIV O65 O N N 201 LIV H11 H N N 202 LIV H21 H N N 203 LIV H211 H N N 204 LIV H212 H N N 205 LIV H311 H N N 206 LIV H312 H N N 207 LIV H41 H N N 208 LIV H3 H N N 209 LIV H51 H N N 210 LIV H611 H N N 211 LIV H612 H N N 212 LIV H61 H N N 213 LIV H12 H N N 214 LIV H121 H N N 215 LIV H122 H N N 216 LIV H62 H N N 217 LIV H2 H N N 218 LIV H52 H N N 219 LIV H42 H N N 220 LIV H32 H N N 221 LIV H321 H N N 222 LIV H322 H N N 223 LIV H221 H N N 224 LIV H222 H N N 225 LIV H13 H N N 226 LIV H23 H N N 227 LIV H1 H N N 228 LIV H33 H N N 229 LIV H43 H N N 230 LIV H531 H N N 231 LIV H532 H N N 232 LIV H53 H N N 233 LIV H44 H N N 234 LIV H34 H N N 235 LIV H4 H N N 236 LIV H24 H N N 237 LIV H241 H N N 238 LIV H242 H N N 239 LIV H14 H N N 240 LIV H54 H N N 241 LIV H11A H N N 242 LIV H12A H N N 243 LIV H641 H N N 244 LIV H642 H N N 245 LIV H15 H N N 246 LIV H25 H N N 247 LIV H35 H N N 248 LIV H45 H N N 249 LIV H55 H N N 250 LIV H651 H N N 251 LIV H652 H N N 252 LIV H7 H N N 253 LIV H6 H N N 254 LIV H5 H N N 255 LIV H65 H N N 256 U OP3 O N N 257 U P P N N 258 U OP1 O N N 259 U OP2 O N N 260 U "O5'" O N N 261 U "C5'" C N N 262 U "C4'" C N R 263 U "O4'" O N N 264 U "C3'" C N S 265 U "O3'" O N N 266 U "C2'" C N R 267 U "O2'" O N N 268 U "C1'" C N R 269 U N1 N N N 270 U C2 C N N 271 U O2 O N N 272 U N3 N N N 273 U C4 C N N 274 U O4 O N N 275 U C5 C N N 276 U C6 C N N 277 U HOP3 H N N 278 U HOP2 H N N 279 U "H5'" H N N 280 U "H5''" H N N 281 U "H4'" H N N 282 U "H3'" H N N 283 U "HO3'" H N N 284 U "H2'" H N N 285 U "HO2'" H N N 286 U "H1'" H N N 287 U H3 H N N 288 U H5 H N N 289 U H6 H N N 290 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 LIV C11 O11 sing N N 153 LIV C11 C21 sing N N 154 LIV C11 O51 sing N N 155 LIV C11 H11 sing N N 156 LIV O11 C42 sing N N 157 LIV C21 N21 sing N N 158 LIV C21 C31 sing N N 159 LIV C21 H21 sing N N 160 LIV N21 H211 sing N N 161 LIV N21 H212 sing N N 162 LIV C31 C41 sing N N 163 LIV C31 H311 sing N N 164 LIV C31 H312 sing N N 165 LIV C41 O41 sing N N 166 LIV C41 C51 sing N N 167 LIV C41 H41 sing N N 168 LIV O41 H3 sing N N 169 LIV C51 O51 sing N N 170 LIV C51 C61 sing N N 171 LIV C51 H51 sing N N 172 LIV C61 O61 sing N N 173 LIV C61 H611 sing N N 174 LIV C61 H612 sing N N 175 LIV O61 H61 sing N N 176 LIV C12 N12 sing N N 177 LIV C12 C62 sing N N 178 LIV C12 C22 sing N N 179 LIV C12 H12 sing N N 180 LIV N12 H121 sing N N 181 LIV N12 H122 sing N N 182 LIV C62 O62 sing N N 183 LIV C62 C52 sing N N 184 LIV C62 H62 sing N N 185 LIV O62 H2 sing N N 186 LIV C52 O52 sing N N 187 LIV C52 C42 sing N N 188 LIV C52 H52 sing N N 189 LIV O52 C13 sing N N 190 LIV C42 C32 sing N N 191 LIV C42 H42 sing N N 192 LIV C32 N32 sing N N 193 LIV C32 C22 sing N N 194 LIV C32 H32 sing N N 195 LIV N32 H321 sing N N 196 LIV N32 H322 sing N N 197 LIV C22 H221 sing N N 198 LIV C22 H222 sing N N 199 LIV C13 C23 sing N N 200 LIV C13 O43 sing N N 201 LIV C13 H13 sing N N 202 LIV C23 O23 sing N N 203 LIV C23 C33 sing N N 204 LIV C23 H23 sing N N 205 LIV O23 H1 sing N N 206 LIV C33 C43 sing N N 207 LIV C33 O33 sing N N 208 LIV C33 H33 sing N N 209 LIV C43 O43 sing N N 210 LIV C43 C53 sing N N 211 LIV C43 H43 sing N N 212 LIV C53 O53 sing N N 213 LIV C53 H531 sing N N 214 LIV C53 H532 sing N N 215 LIV O53 H53 sing N N 216 LIV C44 O44 sing N N 217 LIV C44 C34 sing N N 218 LIV C44 C54 sing N N 219 LIV C44 H44 sing N N 220 LIV O44 C15 sing N N 221 LIV C34 O34 sing N N 222 LIV C34 C24 sing N N 223 LIV C34 H34 sing N N 224 LIV O34 H4 sing N N 225 LIV C24 N24 sing N N 226 LIV C24 C14 sing N N 227 LIV C24 H24 sing N N 228 LIV N24 H241 sing N N 229 LIV N24 H242 sing N N 230 LIV C14 O33 sing N N 231 LIV C14 O54 sing N N 232 LIV C14 H14 sing N N 233 LIV C54 O54 sing N N 234 LIV C54 C64 sing N N 235 LIV C54 H54 sing N N 236 LIV C64 N64 sing N N 237 LIV C64 H11A sing N N 238 LIV C64 H12A sing N N 239 LIV N64 H641 sing N N 240 LIV N64 H642 sing N N 241 LIV C15 C25 sing N N 242 LIV C15 O55 sing N N 243 LIV C15 H15 sing N N 244 LIV C25 C35 sing N N 245 LIV C25 O25 sing N N 246 LIV C25 H25 sing N N 247 LIV C35 C45 sing N N 248 LIV C35 O35 sing N N 249 LIV C35 H35 sing N N 250 LIV C45 C55 sing N N 251 LIV C45 O45 sing N N 252 LIV C45 H45 sing N N 253 LIV C55 C65 sing N N 254 LIV C55 O55 sing N N 255 LIV C55 H55 sing N N 256 LIV C65 O65 sing N N 257 LIV C65 H651 sing N N 258 LIV C65 H652 sing N N 259 LIV O25 H7 sing N N 260 LIV O35 H6 sing N N 261 LIV O45 H5 sing N N 262 LIV O65 H65 sing N N 263 U OP3 P sing N N 264 U OP3 HOP3 sing N N 265 U P OP1 doub N N 266 U P OP2 sing N N 267 U P "O5'" sing N N 268 U OP2 HOP2 sing N N 269 U "O5'" "C5'" sing N N 270 U "C5'" "C4'" sing N N 271 U "C5'" "H5'" sing N N 272 U "C5'" "H5''" sing N N 273 U "C4'" "O4'" sing N N 274 U "C4'" "C3'" sing N N 275 U "C4'" "H4'" sing N N 276 U "O4'" "C1'" sing N N 277 U "C3'" "O3'" sing N N 278 U "C3'" "C2'" sing N N 279 U "C3'" "H3'" sing N N 280 U "O3'" "HO3'" sing N N 281 U "C2'" "O2'" sing N N 282 U "C2'" "C1'" sing N N 283 U "C2'" "H2'" sing N N 284 U "O2'" "HO2'" sing N N 285 U "C1'" N1 sing N N 286 U "C1'" "H1'" sing N N 287 U N1 C2 sing N N 288 U N1 C6 sing N N 289 U C2 O2 doub N N 290 U C2 N3 sing N N 291 U N3 C4 sing N N 292 U N3 H3 sing N N 293 U C4 O4 doub N N 294 U C4 C5 sing N N 295 U C5 C6 doub N N 296 U C5 H5 sing N N 297 U C6 H6 sing N N 298 # _ndb_struct_conf_na.entry_id 2FD0 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 23 1_555 0.280 -0.026 0.090 -0.716 -15.169 0.221 1 A_C1:G23_A A 1 ? A 23 ? 19 1 1 A U 2 1_555 A A 22 1_555 0.088 -0.214 0.539 -9.521 -13.459 0.870 2 A_U2:A22_A A 2 ? A 22 ? 20 1 1 A 5BU 3 1_555 A A 21 1_555 0.077 -0.149 0.163 -1.149 -13.080 4.751 3 A_5BU3:A21_A A 3 ? A 21 ? 20 1 1 A G 4 1_555 A C 20 1_555 -0.146 -0.190 -0.172 -4.163 -13.156 2.597 4 A_G4:C20_A A 4 ? A 20 ? 19 1 1 A C 5 1_555 A G 19 1_555 0.308 -0.149 0.069 -1.367 -15.571 3.191 5 A_C5:G19_A A 5 ? A 19 ? 19 1 1 A U 6 1_555 A A 18 1_555 0.105 -0.144 0.340 2.233 -9.770 2.294 6 A_U6:A18_A A 6 ? A 18 ? 20 1 1 A G 7 1_555 A C 17 1_555 -0.369 -0.110 -0.083 -2.742 -17.771 2.962 7 A_G7:C17_A A 7 ? A 17 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.227 -0.119 0.189 -4.026 -8.650 0.563 8 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.203 -0.025 -0.003 1.730 -10.178 -1.218 9 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A G 12 1_555 B C 13 1_555 -0.096 -0.019 -0.016 -5.610 -10.970 3.551 10 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 0.150 -0.061 0.061 3.566 -8.098 0.828 11 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A A 14 1_555 B U 11 1_555 0.138 -0.109 0.306 7.139 -6.033 1.497 12 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.334 -0.032 -0.175 4.595 -4.999 3.517 13 A_C15:G10_B A 15 ? B 10 ? 19 1 1 B C 1 1_555 B G 23 1_555 0.152 -0.090 -0.100 9.142 -17.282 -0.712 14 B_C1:G23_B B 1 ? B 23 ? 19 1 1 B U 2 1_555 B A 22 1_555 0.024 -0.120 0.286 3.987 -13.914 3.194 15 B_U2:A22_B B 2 ? B 22 ? 20 1 1 B 5BU 3 1_555 B A 21 1_555 0.130 -0.165 0.063 -2.943 -9.757 -7.218 16 B_5BU3:A21_B B 3 ? B 21 ? 20 1 1 B G 4 1_555 B C 20 1_555 0.211 -0.224 -0.203 -3.038 -18.187 0.571 17 B_G4:C20_B B 4 ? B 20 ? 19 1 1 B C 5 1_555 B G 19 1_555 0.102 -0.263 0.092 -1.896 -10.995 1.783 18 B_C5:G19_B B 5 ? B 19 ? 19 1 1 B U 6 1_555 B A 18 1_555 -0.154 -0.083 0.319 -3.090 -11.065 2.991 19 B_U6:A18_B B 6 ? B 18 ? 20 1 1 B G 7 1_555 B C 17 1_555 -0.216 -0.136 -0.152 -7.217 -19.224 0.412 20 B_G7:C17_B B 7 ? B 17 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 23 1_555 A U 2 1_555 A A 22 1_555 -0.315 -1.318 3.401 -6.134 14.818 32.662 -4.127 -0.327 2.599 24.587 10.179 36.291 1 AA_C1U2:A22G23_AA A 1 ? A 23 ? A 2 ? A 22 ? 1 A U 2 1_555 A A 22 1_555 A 5BU 3 1_555 A A 21 1_555 0.271 -0.995 2.931 1.957 5.499 35.332 -2.312 -0.195 2.761 8.984 -3.197 35.796 2 AA_U25BU3:A21A22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A 5BU 3 1_555 A A 21 1_555 A G 4 1_555 A C 20 1_555 0.195 -1.340 3.225 3.299 11.830 30.527 -4.229 0.174 2.550 21.412 -5.970 32.851 3 AA_5BU3G4:C20A21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A G 4 1_555 A C 20 1_555 A C 5 1_555 A G 19 1_555 -0.311 -1.222 3.139 -2.413 7.544 34.462 -3.044 0.183 2.832 12.529 4.007 35.334 4 AA_G4C5:G19C20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A C 5 1_555 A G 19 1_555 A U 6 1_555 A A 18 1_555 0.190 -1.091 3.081 -0.993 6.018 31.491 -2.962 -0.507 2.822 10.960 1.808 32.061 5 AA_C5U6:A18G19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A U 6 1_555 A A 18 1_555 A G 7 1_555 A C 17 1_555 0.132 -1.467 3.295 3.055 9.684 32.312 -4.001 0.241 2.755 16.888 -5.328 33.829 6 AA_U6G7:C17A18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.416 -2.578 3.064 1.373 -0.035 30.929 -4.824 1.026 3.046 -0.066 -2.573 30.958 7 AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 0.094 -1.599 3.267 0.367 10.287 30.210 -4.638 -0.109 2.597 19.056 -0.680 31.877 8 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 -0.306 -1.155 3.056 0.290 8.609 33.594 -3.119 0.553 2.684 14.599 -0.492 34.650 9 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.905 -1.902 2.971 -1.335 10.305 27.439 -5.540 -2.019 2.089 20.803 2.695 29.305 10 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.302 -2.321 3.351 2.865 -0.899 31.419 -4.094 -0.003 3.428 -1.656 -5.275 31.559 11 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 B C 1 1_555 B G 23 1_555 B U 2 1_555 B A 22 1_555 0.331 -1.460 3.291 -3.625 9.790 37.185 -3.357 -0.926 2.789 14.994 5.552 38.572 12 BB_C1U2:A22G23_BB B 1 ? B 23 ? B 2 ? B 22 ? 1 B U 2 1_555 B A 22 1_555 B 5BU 3 1_555 B A 21 1_555 -0.912 -2.206 3.382 -0.966 3.237 34.555 -4.197 1.379 3.192 5.434 1.621 34.714 13 BB_U25BU3:A21A22_BB B 2 ? B 22 ? B 3 ? B 21 ? 1 B 5BU 3 1_555 B A 21 1_555 B G 4 1_555 B C 20 1_555 0.063 -1.644 3.118 2.557 12.109 30.492 -4.697 0.267 2.312 21.924 -4.629 32.853 14 BB_5BU3G4:C20A21_BB B 3 ? B 21 ? B 4 ? B 20 ? 1 B G 4 1_555 B C 20 1_555 B C 5 1_555 B G 19 1_555 -0.533 -1.067 3.230 -3.131 6.882 31.375 -3.097 0.425 2.973 12.499 5.687 32.251 15 BB_G4C5:G19C20_BB B 4 ? B 20 ? B 5 ? B 19 ? 1 B C 5 1_555 B G 19 1_555 B U 6 1_555 B A 18 1_555 0.565 -1.223 3.243 -0.355 6.782 29.901 -3.585 -1.135 2.895 12.934 0.677 30.646 16 BB_C5U6:A18G19_BB B 5 ? B 19 ? B 6 ? B 18 ? 1 B U 6 1_555 B A 18 1_555 B G 7 1_555 B C 17 1_555 0.195 -1.290 3.248 4.538 10.440 35.146 -3.372 0.272 2.769 16.754 -7.283 36.888 17 BB_U6G7:C17A18_BB B 6 ? B 18 ? B 7 ? B 17 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL ; LIV 3 'POTASSIUM ION' K 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2FCY _pdbx_initial_refinement_model.details ? #