data_2FDZ # _entry.id 2FDZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2FDZ RCSB RCSB035762 WWPDB D_1000035762 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2007-04-24 _pdbx_database_PDB_obs_spr.pdb_id 1VSN _pdbx_database_PDB_obs_spr.replace_pdb_id 2FDZ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.entry_id 2FDZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-12-14 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'McGrath, M.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Identification of a potent and selective non-basic cathepsin K inhibitor.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 16 _citation.page_first 1985 _citation.page_last 1989 _citation.year 2006 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16413777 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2005.12.071 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Li, C.S.' 1 primary 'Deschenes, D.' 2 primary 'Desmarais, S.' 3 primary 'Falgueyret, J.P.' 4 primary 'Gauthier, J.Y.' 5 primary 'Kimmel, D.B.' 6 primary 'McGrath, M.E.' 7 primary 'McKay, D.J.' 8 primary 'Percival, M.D.' 9 primary 'Riendeau, D.' 10 primary 'Rodan, S.B.' 11 primary 'Truong, V.L.' 12 primary 'Wesolowski, G.' 13 primary 'Zamboni, R.' 14 primary 'Black, W.C.' 15 # _cell.length_a 38.42 _cell.length_b 51.0 _cell.length_c 104.2 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.entry_id 2FDZ _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 2FDZ _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Cathepsin K' _entity.formula_weight 23030.721 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.4.22.38 _entity.pdbx_mutation ? _entity.pdbx_fragment 'cathepsin K' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cathepsin O, Cathepsin X, Cathepsin O2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRG IDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDAL NHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_seq_one_letter_code_can ;APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRG IDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDAL NHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 ASP n 1 4 SER n 1 5 ILE n 1 6 ASP n 1 7 TYR n 1 8 ARG n 1 9 LYS n 1 10 LYS n 1 11 GLY n 1 12 TYR n 1 13 VAL n 1 14 THR n 1 15 PRO n 1 16 VAL n 1 17 LYS n 1 18 ASN n 1 19 GLN n 1 20 GLY n 1 21 GLN n 1 22 CYS n 1 23 GLY n 1 24 SER n 1 25 CYS n 1 26 TRP n 1 27 ALA n 1 28 PHE n 1 29 SER n 1 30 SER n 1 31 VAL n 1 32 GLY n 1 33 ALA n 1 34 LEU n 1 35 GLU n 1 36 GLY n 1 37 GLN n 1 38 LEU n 1 39 LYS n 1 40 LYS n 1 41 ALA n 1 42 THR n 1 43 GLY n 1 44 ALA n 1 45 LEU n 1 46 LEU n 1 47 ASN n 1 48 LEU n 1 49 ALA n 1 50 PRO n 1 51 GLN n 1 52 ASN n 1 53 LEU n 1 54 VAL n 1 55 ASP n 1 56 CYS n 1 57 VAL n 1 58 SER n 1 59 GLU n 1 60 ASN n 1 61 ASP n 1 62 GLY n 1 63 CYS n 1 64 GLY n 1 65 GLY n 1 66 GLY n 1 67 TYR n 1 68 MET n 1 69 THR n 1 70 ASN n 1 71 ALA n 1 72 PHE n 1 73 GLN n 1 74 TYR n 1 75 VAL n 1 76 GLN n 1 77 ARG n 1 78 ASN n 1 79 ARG n 1 80 GLY n 1 81 ILE n 1 82 ASP n 1 83 SER n 1 84 GLU n 1 85 ASP n 1 86 ALA n 1 87 TYR n 1 88 PRO n 1 89 TYR n 1 90 VAL n 1 91 GLY n 1 92 GLN n 1 93 ASP n 1 94 GLU n 1 95 SER n 1 96 CYS n 1 97 MET n 1 98 TYR n 1 99 ASN n 1 100 PRO n 1 101 THR n 1 102 GLY n 1 103 LYS n 1 104 ALA n 1 105 ALA n 1 106 LYS n 1 107 CYS n 1 108 ARG n 1 109 GLY n 1 110 TYR n 1 111 ARG n 1 112 GLU n 1 113 ILE n 1 114 PRO n 1 115 GLU n 1 116 GLY n 1 117 ASN n 1 118 GLU n 1 119 ALA n 1 120 ALA n 1 121 LEU n 1 122 LYS n 1 123 ARG n 1 124 ALA n 1 125 VAL n 1 126 ALA n 1 127 ALA n 1 128 VAL n 1 129 GLY n 1 130 PRO n 1 131 VAL n 1 132 SER n 1 133 VAL n 1 134 ALA n 1 135 ILE n 1 136 ASP n 1 137 ALA n 1 138 SER n 1 139 LEU n 1 140 THR n 1 141 SER n 1 142 PHE n 1 143 GLN n 1 144 PHE n 1 145 TYR n 1 146 SER n 1 147 ALA n 1 148 GLY n 1 149 VAL n 1 150 TYR n 1 151 TYR n 1 152 ASP n 1 153 GLU n 1 154 ASN n 1 155 CYS n 1 156 SER n 1 157 SER n 1 158 ASP n 1 159 ALA n 1 160 LEU n 1 161 ASN n 1 162 HIS n 1 163 ALA n 1 164 VAL n 1 165 LEU n 1 166 ALA n 1 167 VAL n 1 168 GLY n 1 169 TYR n 1 170 GLY n 1 171 ILE n 1 172 GLN n 1 173 ALA n 1 174 GLY n 1 175 ASN n 1 176 LYS n 1 177 HIS n 1 178 TRP n 1 179 ILE n 1 180 ILE n 1 181 LYS n 1 182 ASN n 1 183 SER n 1 184 TRP n 1 185 GLY n 1 186 GLU n 1 187 SER n 1 188 TRP n 1 189 GLY n 1 190 ASN n 1 191 ALA n 1 192 GLY n 1 193 TYR n 1 194 ILE n 1 195 LEU n 1 196 MET n 1 197 ALA n 1 198 ARG n 1 199 ASN n 1 200 LYS n 1 201 ASN n 1 202 ASN n 1 203 ALA n 1 204 CYS n 1 205 GLY n 1 206 ILE n 1 207 ALA n 1 208 ASN n 1 209 LEU n 1 210 ALA n 1 211 SER n 1 212 PHE n 1 213 PRO n 1 214 LYS n 1 215 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CTSK, CTSO, CTSO2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name yeast _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'GS 115' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATK_HUMAN _struct_ref.pdbx_db_accession P43235 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 115 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FDZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 215 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43235 _struct_ref_seq.db_align_beg 115 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 329 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 211 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FDZ ILE A 5 ? UNP P43235 VAL 119 CONFLICT 5 1 1 2FDZ ALA A 41 ? UNP P43235 LYS 155 CONFLICT 41 2 1 2FDZ ALA A 44 ? UNP P43235 LYS 158 CONFLICT 44 3 1 2FDZ ALA A 49 ? UNP P43235 SER 163 CONFLICT 49 4 1 2FDZ ARG A 77 ? UNP P43235 LYS 191 CONFLICT 77 5 1 2FDZ ASP A 93 ? UNP P43235 GLU 207 CONFLICT 92 6 1 2FDZ ALA A 119 ? UNP P43235 LYS 233 CONFLICT 119 7 1 2FDZ ALA A 127 ? UNP P43235 ARG 241 CONFLICT 127 8 1 2FDZ ALA A 147 ? UNP P43235 LYS 261 CONFLICT 146 9 1 2FDZ ASN A 154 ? UNP P43235 SER 268 CONFLICT 152 10 1 2FDZ SER A 156 ? UNP P43235 ASN 270 CONFLICT 154 11 1 2FDZ ALA A 159 ? UNP P43235 ASN 273 CONFLICT 1156 12 1 2FDZ ALA A 173 ? UNP P43235 LYS 287 CONFLICT 2168 13 1 2FDZ SER A 187 ? UNP P43235 ASN 301 CONFLICT 180 14 1 2FDZ ALA A 191 ? UNP P43235 LYS 305 CONFLICT 184 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2FDZ _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'Mg formate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2002-09-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Ni filter' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2FDZ _reflns.d_resolution_low 30.62 _reflns.d_resolution_high 1.73 _reflns.number_obs 16006 _reflns.percent_possible_obs 71.600 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy ? _reflns.pdbx_scaling_rejects 453 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_low 1.80 _reflns_shell.d_res_high 1.73 _reflns_shell.number_unique_all 430 _reflns_shell.percent_possible_all 10.900 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 8.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 94.100 _refine.ls_number_reflns_obs 13292 _refine.ls_R_factor_R_work 0.171 _refine.ls_R_factor_R_free 0.209 _refine.ls_percent_reflns_R_free 9.400 _refine.ls_number_reflns_R_free 1333 _refine.B_iso_mean 15.471 _refine.entry_id 2FDZ _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16006 _refine.ls_R_factor_all 0.177 _refine.ls_R_factor_obs 0.212 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1615 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1615 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 8.000 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.68 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2FDZ _struct.title 'Crystal structure of a potent small molecule inhibitor bound to cathepsin K' _struct.pdbx_descriptor 'Cathepsin K (E.C.3.4.22.38)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FDZ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'osteoporosis, structure-guided drug design, proteae, Hydrolase' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details 'assembly is the monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 24 ? GLY A 43 ? SER A 24 GLY A 43 1 ? 20 HELX_P HELX_P2 2 ALA A 49 ? VAL A 57 ? ALA A 49 VAL A 57 1 ? 9 HELX_P HELX_P3 3 ASP A 61 ? GLY A 65 ? ASP A 61 GLY A 65 5 ? 5 HELX_P HELX_P4 4 TYR A 67 ? ARG A 79 ? TYR A 67 ARG A 1078 1 ? 13 HELX_P HELX_P5 5 ASN A 99 ? THR A 101 ? ASN A 98 THR A 100 5 ? 3 HELX_P HELX_P6 6 ASN A 117 ? GLY A 129 ? ASN A 117 GLY A 128 1 ? 13 HELX_P HELX_P7 7 LEU A 139 ? PHE A 144 ? LEU A 138 PHE A 143 1 ? 6 HELX_P HELX_P8 8 ASN A 202 ? ILE A 206 ? ASN A 198 ILE A 202 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.031 ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 56 A CYS 95 1_555 ? ? ? ? ? ? ? 2.034 ? disulf3 disulf ? ? A CYS 155 SG ? ? ? 1_555 A CYS 204 SG ? ? A CYS 153 A CYS 200 1_555 ? ? ? ? ? ? ? 2.035 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 5 ? ASP A 6 ? ILE A 5 ASP A 6 A 2 HIS A 162 ? GLN A 172 ? HIS A 159 GLN A 1168 A 3 VAL A 131 ? ILE A 135 ? VAL A 130 ILE A 134 B 1 ILE A 5 ? ASP A 6 ? ILE A 5 ASP A 6 B 2 HIS A 162 ? GLN A 172 ? HIS A 159 GLN A 1168 B 3 ASN A 175 ? LYS A 181 ? ASN A 4168 LYS A 174 B 4 TYR A 193 ? ALA A 197 ? TYR A 186 ALA A 190 B 5 VAL A 149 ? TYR A 150 ? VAL A 148 TYR A 149 C 1 ILE A 81 ? ASP A 82 ? ILE A 80 ASP A 81 C 2 LYS A 103 ? ALA A 105 ? LYS A 102 ALA A 105 D 1 TYR A 110 ? GLU A 112 ? TYR A 110 GLU A 112 D 2 SER A 211 ? PRO A 213 ? SER A 207 PRO A 209 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 5 O TYR A 169 ? O TYR A 166 A 2 3 O VAL A 164 ? O VAL A 161 N VAL A 133 ? N VAL A 132 B 1 2 N ILE A 5 ? N ILE A 5 O TYR A 169 ? O TYR A 166 B 2 3 N LEU A 165 ? N LEU A 162 O LYS A 181 ? O LYS A 174 B 3 4 N ILE A 180 ? N ILE A 173 O ILE A 194 ? O ILE A 187 B 4 5 O LEU A 195 ? O LEU A 188 N TYR A 150 ? N TYR A 149 C 1 2 N ILE A 81 ? N ILE A 80 O ALA A 104 ? O ALA A 103 D 1 2 N ARG A 111 ? N ARG A 111 O PHE A 212 ? O PHE A 208 # _atom_sites.entry_id 2FDZ _atom_sites.fract_transf_matrix[1][1] 0.026028 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019608 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009597 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ARG 79 1078 1078 ARG ARG A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 TYR 87 86 86 TYR TYR A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 TYR 89 88 88 TYR TYR A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 GLN 92 91 91 GLN GLN A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 CYS 96 95 95 CYS CYS A . n A 1 97 MET 97 96 96 MET MET A . n A 1 98 TYR 98 97 97 TYR TYR A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 PRO 100 99 99 PRO PRO A . n A 1 101 THR 101 100 100 THR THR A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 VAL 128 1127 1127 VAL VAL A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 PRO 130 129 129 PRO PRO A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 SER 132 131 131 SER SER A . n A 1 133 VAL 133 132 132 VAL VAL A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 SER 138 137 137 SER SER A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 SER 141 140 140 SER SER A . n A 1 142 PHE 142 141 141 PHE PHE A . n A 1 143 GLN 143 142 142 GLN GLN A . n A 1 144 PHE 144 143 143 PHE PHE A . n A 1 145 TYR 145 144 144 TYR TYR A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 GLY 148 147 147 GLY GLY A . n A 1 149 VAL 149 148 148 VAL VAL A . n A 1 150 TYR 150 149 149 TYR TYR A . n A 1 151 TYR 151 150 150 TYR TYR A . n A 1 152 ASP 152 1150 1150 ASP ASP A . n A 1 153 GLU 153 151 151 GLU GLU A . n A 1 154 ASN 154 152 152 ASN ASN A . n A 1 155 CYS 155 153 153 CYS CYS A . n A 1 156 SER 156 154 154 SER SER A . n A 1 157 SER 157 155 155 SER SER A . n A 1 158 ASP 158 156 156 ASP ASP A . n A 1 159 ALA 159 1156 1156 ALA ALA A . n A 1 160 LEU 160 157 157 LEU LEU A . n A 1 161 ASN 161 158 158 ASN ASN A . n A 1 162 HIS 162 159 159 HIS HIS A . n A 1 163 ALA 163 160 160 ALA ALA A . n A 1 164 VAL 164 161 161 VAL VAL A . n A 1 165 LEU 165 162 162 LEU LEU A . n A 1 166 ALA 166 163 163 ALA ALA A . n A 1 167 VAL 167 164 164 VAL VAL A . n A 1 168 GLY 168 165 165 GLY GLY A . n A 1 169 TYR 169 166 166 TYR TYR A . n A 1 170 GLY 170 167 167 GLY GLY A . n A 1 171 ILE 171 168 168 ILE ILE A . n A 1 172 GLN 172 1168 1168 GLN GLN A . n A 1 173 ALA 173 2168 2168 ALA ALA A . n A 1 174 GLY 174 3168 3168 GLY GLY A . n A 1 175 ASN 175 4168 4168 ASN ASN A . n A 1 176 LYS 176 169 169 LYS LYS A . n A 1 177 HIS 177 170 170 HIS HIS A . n A 1 178 TRP 178 171 171 TRP TRP A . n A 1 179 ILE 179 172 172 ILE ILE A . n A 1 180 ILE 180 173 173 ILE ILE A . n A 1 181 LYS 181 174 174 LYS LYS A . n A 1 182 ASN 182 175 175 ASN ASN A . n A 1 183 SER 183 176 176 SER SER A . n A 1 184 TRP 184 177 177 TRP TRP A . n A 1 185 GLY 185 178 178 GLY GLY A . n A 1 186 GLU 186 179 179 GLU GLU A . n A 1 187 SER 187 180 180 SER SER A . n A 1 188 TRP 188 181 181 TRP TRP A . n A 1 189 GLY 189 182 182 GLY GLY A . n A 1 190 ASN 190 183 183 ASN ASN A . n A 1 191 ALA 191 184 184 ALA ALA A . n A 1 192 GLY 192 185 185 GLY GLY A . n A 1 193 TYR 193 186 186 TYR TYR A . n A 1 194 ILE 194 187 187 ILE ILE A . n A 1 195 LEU 195 188 188 LEU LEU A . n A 1 196 MET 196 189 189 MET MET A . n A 1 197 ALA 197 190 190 ALA ALA A . n A 1 198 ARG 198 191 191 ARG ARG A . n A 1 199 ASN 199 192 192 ASN ASN A . n A 1 200 LYS 200 193 193 LYS LYS A . n A 1 201 ASN 201 194 194 ASN ASN A . n A 1 202 ASN 202 198 198 ASN ASN A . n A 1 203 ALA 203 199 199 ALA ALA A . n A 1 204 CYS 204 200 200 CYS CYS A . n A 1 205 GLY 205 201 201 GLY GLY A . n A 1 206 ILE 206 202 202 ILE ILE A . n A 1 207 ALA 207 203 203 ALA ALA A . n A 1 208 ASN 208 204 204 ASN ASN A . n A 1 209 LEU 209 205 205 LEU LEU A . n A 1 210 ALA 210 206 206 ALA ALA A . n A 1 211 SER 211 207 207 SER SER A . n A 1 212 PHE 212 208 208 PHE PHE A . n A 1 213 PRO 213 209 209 PRO PRO A . n A 1 214 LYS 214 210 210 LYS LYS A . n A 1 215 MET 215 211 211 MET MET A . n # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-28 2 'Structure model' 1 1 2007-04-24 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_low 30.62 _diffrn_reflns.pdbx_d_res_high 1.73 _diffrn_reflns.number 6976 _diffrn_reflns.pdbx_percent_possible_obs 71.600 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_rejects 453 _diffrn_reflns.pdbx_number_obs ? _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_observed_criterion ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.percent_possible_obs _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.Rsym_value 1 30.62 3.73 97.000 ? ? ? 258 ? ? 1 3.73 2.96 97.900 ? ? ? 67 ? ? 1 2.96 2.59 97.100 ? ? ? 22 ? ? 1 2.59 2.35 96.200 ? ? ? 25 ? ? 1 2.35 2.18 95.500 ? ? ? 20 ? ? 1 2.18 2.05 90.900 ? ? ? 39 ? ? 1 2.05 1.95 61.200 ? ? ? 17 ? ? 1 1.95 1.87 40.900 ? ? ? 5 ? ? 1 1.87 1.80 27.400 ? ? ? 0 ? ? 1 1.80 1.73 10.900 ? ? ? 0 ? ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 7.2SSIbeta 'Aug 7 2001' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data processing' http://www.msc.com/protein/dtrek.html ? ? 1 REFMAC5 . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 2 PDB_EXTRACT 1.701 'OCT. 28, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 BIOTEX . ? ? ? ? 'data reduction' ? ? ? 4 d*TREK . ? ? ? ? 'data scaling' ? ? ? 5 XTALVIEW . ? ? ? ? phasing ? ? ? 6 CNS . ? ? ? ? refinement ? ? ? 7 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 46 ? ? CB A LEU 46 ? ? CG A LEU 46 ? ? 134.08 115.30 18.78 2.30 N 2 1 NE A ARG 1078 ? ? CZ A ARG 1078 ? ? NH1 A ARG 1078 ? ? 116.74 120.30 -3.56 0.50 N 3 1 NE A ARG 108 ? ? CZ A ARG 108 ? ? NH1 A ARG 108 ? ? 112.24 120.30 -8.06 0.50 N 4 1 NE A ARG 108 ? ? CZ A ARG 108 ? ? NH2 A ARG 108 ? ? 125.38 120.30 5.08 0.50 N 5 1 NE A ARG 111 ? ? CZ A ARG 111 ? ? NH2 A ARG 111 ? ? 124.70 120.30 4.40 0.50 N 6 1 CA A LEU 162 ? ? CB A LEU 162 ? ? CG A LEU 162 ? ? 132.12 115.30 16.82 2.30 N 7 1 CA A LYS 193 ? ? CB A LYS 193 ? ? CG A LYS 193 ? ? 127.88 113.40 14.48 2.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 86 ? ? -154.23 77.91 2 1 SER A 145 ? ? -171.18 114.53 3 1 ALA A 146 ? ? 63.54 149.94 4 1 LYS A 193 ? ? -113.71 57.94 #