HEADER HYDROLASE 15-DEC-05 2FEB TITLE NMR SOLUTION STRUCTURE, DYNAMICS AND BINDING PROPERTIES OF THE KRINGLE TITLE 2 IV TYPE 8 MODULE OF APOLIPOPROTEIN(A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN(A); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KRINGLE MODULE; COMPND 5 SYNONYM: APOA, LPA; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS TRI-LOOP STRUCTURE, DISULPHIDE BONDED PROTEIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.CHITAYAT,V.KANELIS,M.L.KOSCHINSKY,S.P.SMITH REVDAT 4 09-MAR-22 2FEB 1 REMARK SEQADV REVDAT 3 24-FEB-09 2FEB 1 VERSN REVDAT 2 21-AUG-07 2FEB 1 JRNL REVDAT 1 26-DEC-06 2FEB 0 JRNL AUTH S.CHITAYAT,V.KANELIS,M.L.KOSCHINSKY,S.P.SMITH JRNL TITL NUCLEAR MAGNETIC RESONANCE (NMR) SOLUTION STRUCTURE, JRNL TITL 2 DYNAMICS, AND BINDING PROPERTIES OF THE KRINGLE IV TYPE 8 JRNL TITL 3 MODULE OF APOLIPOPROTEIN(A). JRNL REF BIOCHEMISTRY V. 46 1732 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17263558 JRNL DOI 10.1021/BI061814G REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER (CNS), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 3070 NOE-DERIVED DISTANCE RESTRAINTS, REMARK 3 43 DIHEDRAL ANGLE RESTRAINTS REMARK 4 REMARK 4 2FEB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035774. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 20MM TRIS REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM KRINGLE IV TYPE 8, H20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_AROMATIC_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED,STRUCTURES WITH REMARK 210 ACCEPTABLE COVALENT GEOMETRY, REMARK 210 STRUCTURES WITH FAVORABLE NON- REMARK 210 BOND ENERGY,STRUCTURES WITH THE REMARK 210 LEAST RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 21 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D MULTI REMARK 210 -DIMENSIONAL HETERONUCLEAR NMR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TYR A 19 O THR A 93 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 168.75 60.50 REMARK 500 1 MET A 6 -40.31 -177.11 REMARK 500 1 PRO A 8 63.40 -68.98 REMARK 500 1 THR A 9 -173.86 -178.34 REMARK 500 1 GLU A 10 -176.50 -175.59 REMARK 500 1 ASN A 11 102.13 71.68 REMARK 500 1 SER A 12 -89.13 53.22 REMARK 500 1 THR A 13 64.21 -101.70 REMARK 500 1 GLN A 16 -153.07 -66.31 REMARK 500 1 ASP A 17 107.71 74.03 REMARK 500 1 SER A 25 47.24 -94.62 REMARK 500 1 THR A 33 105.64 -160.06 REMARK 500 1 ILE A 34 -111.39 87.02 REMARK 500 1 THR A 35 53.62 -147.42 REMARK 500 1 THR A 38 -165.67 -117.79 REMARK 500 1 GLN A 40 103.15 63.23 REMARK 500 1 TRP A 42 82.74 -62.14 REMARK 500 1 SER A 43 -22.60 159.92 REMARK 500 1 THR A 46 -67.51 -150.35 REMARK 500 1 HIS A 50 -72.60 -49.90 REMARK 500 1 ARG A 51 -174.23 177.51 REMARK 500 1 ARG A 52 92.79 -46.64 REMARK 500 1 PRO A 54 63.13 -56.25 REMARK 500 1 LEU A 55 -35.31 -148.28 REMARK 500 1 PRO A 58 60.21 -67.72 REMARK 500 1 ASN A 59 68.14 20.77 REMARK 500 1 ARG A 64 -106.04 50.13 REMARK 500 1 CYS A 67 111.59 -23.05 REMARK 500 1 ASP A 71 -114.15 -98.81 REMARK 500 1 GLU A 73 -76.11 172.30 REMARK 500 1 ILE A 74 -45.26 -164.28 REMARK 500 1 TRP A 77 81.05 -158.99 REMARK 500 1 TYR A 79 -179.31 -57.35 REMARK 500 1 SER A 84 25.06 -160.59 REMARK 500 1 VAL A 85 -68.24 -136.68 REMARK 500 1 ARG A 86 -19.21 82.14 REMARK 500 1 ASN A 91 73.64 -69.03 REMARK 500 1 VAL A 97 -66.85 -152.26 REMARK 500 1 GLU A 99 -169.86 -127.00 REMARK 500 1 SER A 101 -72.94 -110.01 REMARK 500 2 HIS A 5 -76.27 -108.18 REMARK 500 2 MET A 6 135.81 -177.05 REMARK 500 2 ALA A 7 87.82 -161.91 REMARK 500 2 THR A 9 -39.95 -176.82 REMARK 500 2 ASN A 11 -78.74 64.33 REMARK 500 2 THR A 13 81.40 -162.90 REMARK 500 2 GLN A 16 -52.17 -166.38 REMARK 500 2 SER A 25 33.62 -177.35 REMARK 500 2 TYR A 26 29.52 47.01 REMARK 500 2 SER A 31 76.41 -66.33 REMARK 500 REMARK 500 THIS ENTRY HAS 748 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2FEB A 7 102 UNP P08519 APOA_HUMAN 3885 3980 SEQADV 2FEB ILE A 1 UNP P08519 CLONING ARTIFACT SEQADV 2FEB GLU A 2 UNP P08519 CLONING ARTIFACT SEQADV 2FEB GLY A 3 UNP P08519 CLONING ARTIFACT SEQADV 2FEB ARG A 4 UNP P08519 CLONING ARTIFACT SEQADV 2FEB HIS A 5 UNP P08519 CLONING ARTIFACT SEQADV 2FEB MET A 6 UNP P08519 CLONING ARTIFACT SEQRES 1 A 102 ILE GLU GLY ARG HIS MET ALA PRO THR GLU ASN SER THR SEQRES 2 A 102 GLY VAL GLN ASP CYS TYR ARG GLY ASP GLY GLN SER TYR SEQRES 3 A 102 ARG GLY THR LEU SER THR THR ILE THR GLY ARG THR CYS SEQRES 4 A 102 GLN SER TRP SER SER MET THR PRO HIS TRP HIS ARG ARG SEQRES 5 A 102 ILE PRO LEU TYR TYR PRO ASN ALA GLY LEU THR ARG ASN SEQRES 6 A 102 TYR CYS ARG ASN PRO ASP ALA GLU ILE ARG PRO TRP CYS SEQRES 7 A 102 TYR THR MET ASP PRO SER VAL ARG TRP GLU TYR CYS ASN SEQRES 8 A 102 LEU THR ARG CYS PRO VAL THR GLU SER SER VAL SSBOND 1 CYS A 18 CYS A 95 1555 1555 2.03 SSBOND 2 CYS A 39 CYS A 78 1555 1555 2.03 SSBOND 3 CYS A 67 CYS A 90 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1