data_2FEY # _entry.id 2FEY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FEY pdb_00002fey 10.2210/pdb2fey/pdb RCSB RCSB035797 ? ? WWPDB D_1000035797 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FEY _pdbx_database_status.recvd_initial_deposition_date 2005-12-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, Y.' 1 'Fender, J.' 2 'Legassie, J.D.' 3 'Jarstfer, M.B.' 4 'Bryan, T.M.' 5 'Varani, G.' 6 # _citation.id primary _citation.title 'Structure of stem-loop IV of Tetrahymena telomerase RNA.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 25 _citation.page_first 3156 _citation.page_last 3166 _citation.year 2006 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16778765 _citation.pdbx_database_id_DOI 10.1038/sj.emboj.7601195 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, Y.' 1 ? primary 'Fender, J.' 2 ? primary 'Legassie, J.D.' 3 ? primary 'Jarstfer, M.B.' 4 ? primary 'Bryan, T.M.' 5 ? primary 'Varani, G.' 6 ? # _cell.entry_id 2FEY _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FEY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'stem-loop IV of Tetrahymena telomerase RNA' _entity.formula_weight 13685.097 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAGACUAUCGACAUUUGAUACACUAUUUAUCAAUGGAUGUCUC _entity_poly.pdbx_seq_one_letter_code_can GAGACUAUCGACAUUUGAUACACUAUUUAUCAAUGGAUGUCUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 A n 1 8 U n 1 9 C n 1 10 G n 1 11 A n 1 12 C n 1 13 A n 1 14 U n 1 15 U n 1 16 U n 1 17 G n 1 18 A n 1 19 U n 1 20 A n 1 21 C n 1 22 A n 1 23 C n 1 24 U n 1 25 A n 1 26 U n 1 27 U n 1 28 U n 1 29 A n 1 30 U n 1 31 C n 1 32 A n 1 33 A n 1 34 U n 1 35 G n 1 36 G n 1 37 A n 1 38 U n 1 39 G n 1 40 U n 1 41 C n 1 42 U n 1 43 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;This sequence naturally occurs in the stem-loop IV of Tetrahymena telomerase RNA. It was synthesized by T7 RNA Polymerase in vitro transcription from DNA oligonucleotide template. ; # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2FEY _struct_ref.pdbx_db_accession 2FEY _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FEY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 43 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2FEY _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 43 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 43 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 1 3D_13C-separated_NOESY 3 4 1 'HCP TRIPLE RESONANCE' 3 5 1 '3D 13C-31P HETCOR' 3 6 1 '3D 13C TOCSY-HSQC' 3 7 1 HNN-COSY 4 8 1 IPAP-HSQC 5 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 1 6.0 10mM atm K 2 278 1 6.0 10mM atm K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1 MM unlabelled samples' '10 mM SODIUM PHOSHATE, PH 6.0, 100% D2O' 2 '1 MM unlabelled samples' '10 mM SODIUM PHOSHATE, PH 6.0, 90% H2O, 10% D2O' 3 '0.5 mM, 15N,13C-labelled' '10 mM SODIUM PHOSHATE, PH 6.0, 100% D2O' 4 '0.5 mM, 15N,13C-labelled' '10 mM SODIUM PHOSHATE, PH 6.0, 90% H2O, 10% D2O' 5 '0.5 mM, 15N,13C-labelled' '10 MM SODIUM SUCCINATE, PH 6.0, 14 MG/ML PF1 BACTERIAPHAGE, 100% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DMX Bruker 750 ? 3 INOVA Varian 600 ? # _pdbx_nmr_refine.entry_id 2FEY _pdbx_nmr_refine.method 'TORSION ANGLE DYNAMICS, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2FEY _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry,structures with the least restraint violations,structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2FEY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations,lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' X-PLOR 2.9.7 'Clore, G.M. & Kuszewski, J.' 1 processing NMRPipe 2.3 'F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax' 2 'data analysis' Sparky 3.110 'T. D. Goddard and D. G. Kneller' 3 collection XwinNMR 3.0 Bruker 4 refinement X-PLOR 2.9.7 'Clore, G.M. & Kuszewski, J.' 5 # _exptl.entry_id 2FEY _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2FEY _struct.title 'The structure of stem loop IV of Tetrahymena telomerase RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FEY _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'telomerase RNA, Tetrahymena, stem-loop IV, heptaloop, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 1 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 1 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 1 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 2 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 2 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 3 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 3 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 3 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 40 N3 ? ? A A 4 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 40 O4 ? ? A A 4 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 5 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 5 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 5 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 9 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 9 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 9 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 12 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 12 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 12 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 13 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 13 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 14 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 14 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 17 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 17 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 17 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 30 N3 ? ? A A 18 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 30 O4 ? ? A A 18 A U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 19 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 19 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 20 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 20 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 21 N4 ? ? ? 1_555 A U 27 O4 ? ? A C 21 A U 27 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2FEY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FEY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 U 19 19 19 U U A . n A 1 20 A 20 20 20 A A A . n A 1 21 C 21 21 21 C C A . n A 1 22 A 22 22 22 A A A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 A 25 25 25 A A A . n A 1 26 U 26 26 26 U U A . n A 1 27 U 27 27 27 U U A . n A 1 28 U 28 28 28 U U A . n A 1 29 A 29 29 29 A A A . n A 1 30 U 30 30 30 U U A . n A 1 31 C 31 31 31 C C A . n A 1 32 A 32 32 32 A A A . n A 1 33 A 33 33 33 A A A . n A 1 34 U 34 34 34 U U A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 A 37 37 37 A A A . n A 1 38 U 38 38 38 U U A . n A 1 39 G 39 39 39 G G A . n A 1 40 U 40 40 40 U U A . n A 1 41 C 41 41 41 C C A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-27 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" A U 38 ? ? H8 A G 39 ? ? 1.52 2 1 "O2'" A A 37 ? ? H6 A U 38 ? ? 1.52 3 1 "O2'" A U 28 ? ? "H5'" A A 29 ? ? 1.57 4 2 "H4'" A U 26 ? ? "O4'" A U 27 ? ? 1.59 5 2 "O2'" A U 28 ? ? "H5'" A A 29 ? ? 1.60 6 3 "HO2'" A U 6 ? ? "O5'" A A 7 ? ? 1.45 7 3 "O2'" A G 1 ? ? H8 A A 2 ? ? 1.56 8 3 "O2'" A G 35 ? ? "H5'" A G 36 ? ? 1.59 9 4 "H4'" A U 26 ? ? "O4'" A U 27 ? ? 1.59 10 5 "O2'" A G 35 ? ? "H5''" A G 36 ? ? 1.55 11 5 "O2'" A A 37 ? ? "H5''" A U 38 ? ? 1.57 12 6 "H4'" A U 26 ? ? "O4'" A U 27 ? ? 1.60 13 7 OP1 A C 9 ? ? "HO2'" A U 38 ? ? 1.41 14 7 O4 A U 16 ? ? H61 A A 32 ? ? 1.52 15 8 "HO2'" A A 2 ? ? "O5'" A G 3 ? ? 1.36 16 8 "H4'" A U 26 ? ? "O4'" A U 27 ? ? 1.56 17 8 "HO2'" A C 31 ? ? "O4'" A A 32 ? ? 1.57 18 9 "HO2'" A G 1 ? ? "O5'" A A 2 ? ? 1.43 19 9 "H1'" A C 23 ? ? "O2'" A A 25 ? ? 1.54 20 9 "O3'" A U 16 ? ? H8 A G 17 ? ? 1.59 21 10 "HO2'" A C 31 ? ? "O4'" A A 32 ? ? 1.53 22 10 "O2'" A U 28 ? ? "H5'" A A 29 ? ? 1.58 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2FEY 'double helix' 2FEY 'a-form double helix' 2FEY 'hairpin loop' 2FEY 'mismatched base pair' 2FEY 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 43 1_555 -0.574 -0.265 -0.340 -3.399 12.483 -2.469 1 A_G1:C43_A A 1 ? A 43 ? 19 1 1 A A 2 1_555 A U 42 1_555 -0.354 -0.343 -0.706 -11.572 7.262 1.608 2 A_A2:U42_A A 2 ? A 42 ? 20 1 1 A G 3 1_555 A C 41 1_555 0.464 -0.100 0.213 4.175 -10.874 -1.526 3 A_G3:C41_A A 3 ? A 41 ? 19 1 1 A A 4 1_555 A U 40 1_555 -0.308 -0.264 0.283 -0.812 -0.307 2.586 4 A_A4:U40_A A 4 ? A 40 ? 20 1 1 A C 5 1_555 A G 39 1_555 0.463 -0.099 -0.265 28.253 -3.567 -1.194 5 A_C5:G39_A A 5 ? A 39 ? 19 1 1 A C 9 1_555 A G 36 1_555 0.216 -0.043 0.322 -25.233 7.121 -1.502 6 A_C9:G36_A A 9 ? A 36 ? 19 1 1 A C 12 1_555 A G 35 1_555 -0.248 -0.053 -0.227 12.061 -10.444 -0.762 7 A_C12:G35_A A 12 ? A 35 ? 19 1 1 A A 13 1_555 A U 34 1_555 0.151 -0.159 0.559 24.716 -16.922 -0.163 8 A_A13:U34_A A 13 ? A 34 ? 20 1 1 A U 14 1_555 A A 33 1_555 -0.029 -0.164 0.302 -16.945 -6.761 2.147 9 A_U14:A33_A A 14 ? A 33 ? 20 1 1 A G 17 1_555 A C 31 1_555 -0.508 -0.198 -0.412 -9.329 1.287 -1.860 10 A_G17:C31_A A 17 ? A 31 ? 19 1 1 A A 18 1_555 A U 30 1_555 0.332 -0.226 -0.016 21.354 -35.490 0.957 11 A_A18:U30_A A 18 ? A 30 ? 20 1 1 A U 19 1_555 A A 29 1_555 -0.116 -0.212 -0.550 12.282 -9.844 4.266 12 A_U19:A29_A A 19 ? A 29 ? 20 1 1 A A 20 1_555 A U 28 1_555 0.150 -0.174 0.224 12.690 14.397 2.062 13 A_A20:U28_A A 20 ? A 28 ? 20 1 1 A C 21 1_555 A U 27 1_555 -0.312 -0.537 -0.320 16.556 -13.480 -23.202 14 A_C21:U27_A A 21 ? A 27 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 43 1_555 A A 2 1_555 A U 42 1_555 -1.206 -1.233 3.275 -12.213 30.048 36.535 -3.704 0.573 2.056 39.705 16.138 48.485 1 AA_G1A2:U42C43_AA A 1 ? A 43 ? A 2 ? A 42 ? 1 A A 2 1_555 A U 42 1_555 A G 3 1_555 A C 41 1_555 -1.309 -1.250 3.435 -1.938 -18.979 29.680 1.275 1.825 3.642 -33.097 3.380 35.166 2 AA_A2G3:C41U42_AA A 2 ? A 42 ? A 3 ? A 41 ? 1 A G 3 1_555 A C 41 1_555 A A 4 1_555 A U 40 1_555 0.257 -0.640 3.775 -2.330 21.960 36.406 -3.375 -0.620 2.928 31.812 3.376 42.385 3 AA_G3A4:U40C41_AA A 3 ? A 41 ? A 4 ? A 40 ? 1 A A 4 1_555 A U 40 1_555 A C 5 1_555 A G 39 1_555 -0.420 -0.521 2.941 4.733 -5.671 40.879 -0.191 1.048 2.920 -8.041 -6.711 41.513 4 AA_A4C5:G39U40_AA A 4 ? A 40 ? A 5 ? A 39 ? 1 A C 9 1_555 A G 36 1_555 A C 12 1_555 A G 35 1_555 -3.814 -0.795 6.222 46.844 -6.447 69.697 -0.332 4.857 3.560 -5.107 -37.107 82.510 5 AA_C9C12:G35G36_AA A 9 ? A 36 ? A 12 ? A 35 ? 1 A C 12 1_555 A G 35 1_555 A A 13 1_555 A U 34 1_555 -0.009 -0.741 3.053 -1.456 15.895 21.959 -5.067 -0.299 2.054 36.205 3.317 27.090 6 AA_C12A13:U34G35_AA A 12 ? A 35 ? A 13 ? A 34 ? 1 A A 13 1_555 A U 34 1_555 A U 14 1_555 A A 33 1_555 -0.478 -1.343 5.862 -3.049 -11.105 34.375 0.753 -0.031 6.014 -18.169 4.989 36.197 7 AA_A13U14:A33U34_AA A 13 ? A 34 ? A 14 ? A 33 ? 1 A U 14 1_555 A A 33 1_555 A G 17 1_555 A C 31 1_555 -2.049 -3.537 6.094 7.534 9.808 68.603 -3.726 2.277 5.387 8.631 -6.629 69.574 8 AA_U14G17:C31A33_AA A 14 ? A 33 ? A 17 ? A 31 ? 1 A G 17 1_555 A C 31 1_555 A A 18 1_555 A U 30 1_555 -0.299 0.420 2.740 1.239 -0.724 43.285 0.629 0.505 2.724 -0.981 -1.679 43.308 9 AA_G17A18:U30C31_AA A 17 ? A 31 ? A 18 ? A 30 ? 1 A A 18 1_555 A U 30 1_555 A U 19 1_555 A A 29 1_555 0.347 -0.681 3.970 1.405 2.974 36.430 -1.580 -0.319 3.915 4.746 -2.241 36.573 10 AA_A18U19:A29U30_AA A 18 ? A 30 ? A 19 ? A 29 ? 1 A U 19 1_555 A A 29 1_555 A A 20 1_555 A U 28 1_555 0.355 -2.250 3.128 -5.368 20.458 20.039 -7.490 -1.496 0.536 45.480 11.933 29.057 11 AA_U19A20:U28A29_AA A 19 ? A 29 ? A 20 ? A 28 ? 1 A A 20 1_555 A U 28 1_555 A C 21 1_555 A U 27 1_555 -1.661 -2.391 2.809 -0.918 -5.990 31.939 -3.295 2.818 3.237 -10.765 1.650 32.494 12 AA_A20C21:U27U28_AA A 20 ? A 28 ? A 21 ? A 27 ? #