HEADER TRANSCRIPTION 19-DEC-05 2FF4 TITLE MYCOBACTERIUM TUBERCULOSIS EMBR IN COMPLEX WITH LOW AFFINITY TITLE 2 PHOSPHOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE REGULATORY PROTEIN EMBR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA REPAIR PROTEIN RAD9; COMPND 7 CHAIN: E, F; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: EMBR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23C; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN SOURCE 14 SACCHAROMYCES CEREVISIAE (YEAST). KEYWDS WINGED-HELIX; TETRATRICOPEPTIDE REPEAT; BETA-SANDWICH, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.FUTTERER,L.J.ALDERWICK,G.S.BESRA REVDAT 4 13-JUL-11 2FF4 1 VERSN REVDAT 3 24-FEB-09 2FF4 1 VERSN REVDAT 2 16-MAY-06 2FF4 1 JRNL REVDAT 1 24-JAN-06 2FF4 0 JRNL AUTH L.J.ALDERWICK,V.MOLLE,L.KREMER,A.J.COZZONE,T.R.DAFFORN, JRNL AUTH 2 G.S.BESRA,K.FUTTERER JRNL TITL MOLECULAR STRUCTURE OF EMBR, A RESPONSE ELEMENT OF SER/THR JRNL TITL 2 KINASE SIGNALING IN MYCOBACTERIUM TUBERCULOSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 2558 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16477027 JRNL DOI 10.1073/PNAS.0507766103 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 72016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3773 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5316 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5845 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.021 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5959 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8115 ; 1.132 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 762 ; 5.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;32.570 ;22.799 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 936 ;14.318 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;18.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 935 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4561 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2616 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4013 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 439 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3938 ; 0.454 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6102 ; 0.723 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2282 ; 1.176 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2013 ; 1.915 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): -26.4876 8.5186 0.6873 REMARK 3 T TENSOR REMARK 3 T11: -0.0794 T22: -0.0696 REMARK 3 T33: -0.1093 T12: 0.0025 REMARK 3 T13: -0.0004 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.3959 L22: 1.4337 REMARK 3 L33: 0.3203 L12: 0.0484 REMARK 3 L13: -0.0035 L23: 0.0546 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.0601 S13: 0.0000 REMARK 3 S21: 0.0324 S22: -0.0556 S23: 0.0300 REMARK 3 S31: -0.0701 S32: -0.0447 S33: 0.0189 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 380 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3213 -6.4996 -24.5539 REMARK 3 T TENSOR REMARK 3 T11: -0.0880 T22: -0.0560 REMARK 3 T33: -0.1015 T12: -0.0166 REMARK 3 T13: 0.0148 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.5821 L22: 1.5688 REMARK 3 L33: 0.4753 L12: -0.1491 REMARK 3 L13: 0.0077 L23: -0.2293 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.1038 S13: -0.0938 REMARK 3 S21: -0.0957 S22: -0.0505 S23: 0.0225 REMARK 3 S31: 0.0252 S32: 0.0105 S33: 0.0589 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 7 REMARK 3 ORIGIN FOR THE GROUP (A): -43.4957 -1.2896 -21.0982 REMARK 3 T TENSOR REMARK 3 T11: 0.0004 T22: 0.0006 REMARK 3 T33: 0.0009 T12: 0.0002 REMARK 3 T13: 0.0007 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 29.0090 L22: 46.2922 REMARK 3 L33: 39.8708 L12: -5.4577 REMARK 3 L13: -0.0650 L23: -2.5186 REMARK 3 S TENSOR REMARK 3 S11: -0.2398 S12: 0.4590 S13: -1.1485 REMARK 3 S21: -0.5162 S22: 0.5334 S23: 0.4997 REMARK 3 S31: 1.7669 S32: 0.0819 S33: -0.2936 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 3 F 7 REMARK 3 ORIGIN FOR THE GROUP (A): -43.4992 -0.4511 -27.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.0007 T22: 0.0009 REMARK 3 T33: 0.0015 T12: 0.0009 REMARK 3 T13: 0.0008 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 70.0329 L22: 38.2691 REMARK 3 L33: 23.8617 L12: 5.9048 REMARK 3 L13: -14.8064 L23: 8.4516 REMARK 3 S TENSOR REMARK 3 S11: -0.2780 S12: -0.4931 S13: 0.2060 REMARK 3 S21: -0.6579 S22: 0.1669 S23: -0.0653 REMARK 3 S31: 0.2758 S32: -0.8138 S33: 0.1112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-06. REMARK 100 THE RCSB ID CODE IS RCSB035803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75792 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 2.5% PEG 8000, 3% REMARK 280 ETHYLENE GLYCOL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.19500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.19500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 GLY A 387 REMARK 465 THR A 388 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 VAL B 7 REMARK 465 SER B 381 REMARK 465 ALA B 382 REMARK 465 GLY B 383 REMARK 465 THR B 384 REMARK 465 HIS B 385 REMARK 465 GLY B 386 REMARK 465 GLY B 387 REMARK 465 THR B 388 REMARK 465 THR E 9 REMARK 465 SER F 1 REMARK 465 LEU F 2 REMARK 465 THR F 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 286 CG CD OE1 NE2 REMARK 470 SER B 284 OG REMARK 470 GLN B 286 CG CD OE1 NE2 REMARK 470 GLN B 287 CG CD OE1 NE2 REMARK 470 GLU B 355 CD OE1 OE2 REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 VAL E 4 CB CG1 CG2 REMARK 470 GLU E 6 CG CD OE1 OE2 REMARK 470 GLU F 3 CD OE1 OE2 REMARK 470 VAL F 4 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG B 229 O HOH A 430 1545 2.12 REMARK 500 NE ARG B 136 O HOH A 551 2555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 98 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 61 -92.65 21.32 REMARK 500 ARG A 186 42.97 -108.41 REMARK 500 SER A 359 -55.95 -150.68 REMARK 500 CYS A 372 -113.49 55.97 REMARK 500 GLU B 61 -132.01 56.83 REMARK 500 PRO B 98 -26.68 -20.90 REMARK 500 CYS B 372 -113.34 56.10 REMARK 500 LEU E 2 33.11 -89.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 98 PRO B 99 146.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 531 DISTANCE = 5.56 ANGSTROMS REMARK 525 HOH B 548 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH B 572 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B 625 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH B 633 DISTANCE = 5.08 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FEZ RELATED DB: PDB DBREF 2FF4 A 1 388 UNP P66799 EMBR_MYCTU 1 388 DBREF 2FF4 B 1 388 UNP P66799 EMBR_MYCTU 1 388 DBREF 2FF4 E 1 8 UNP P14737 RAD9_YEAST 188 195 DBREF 2FF4 F 1 8 UNP P14737 RAD9_YEAST 188 195 SEQADV 2FF4 TPO E 5 UNP P14737 THR 192 MODIFIED RESIDUE SEQADV 2FF4 THR E 9 UNP P14737 INSERTION SEQADV 2FF4 TPO F 5 UNP P14737 THR 192 MODIFIED RESIDUE SEQADV 2FF4 THR F 9 UNP P14737 INSERTION SEQRES 1 A 388 MET ALA GLY SER ALA THR VAL GLU LYS ARG LEU ASP PHE SEQRES 2 A 388 GLY LEU LEU GLY PRO LEU GLN MET THR ILE ASP GLY THR SEQRES 3 A 388 PRO VAL PRO SER GLY THR PRO LYS GLN ARG ALA VAL LEU SEQRES 4 A 388 ALA MET LEU VAL ILE ASN ARG ASN ARG PRO VAL GLY VAL SEQRES 5 A 388 ASP ALA LEU ILE THR ALA LEU TRP GLU GLU TRP PRO PRO SEQRES 6 A 388 SER GLY ALA ARG ALA SER ILE HIS SER TYR VAL SER ASN SEQRES 7 A 388 LEU ARG LYS LEU LEU GLY GLY ALA GLY ILE ASP PRO ARG SEQRES 8 A 388 VAL VAL LEU ALA ALA ALA PRO PRO GLY TYR ARG LEU SER SEQRES 9 A 388 ILE PRO ASP ASN THR CYS ASP LEU GLY ARG PHE VAL ALA SEQRES 10 A 388 GLU LYS THR ALA GLY VAL HIS ALA ALA ALA ALA GLY ARG SEQRES 11 A 388 PHE GLU GLN ALA SER ARG HIS LEU SER ALA ALA LEU ARG SEQRES 12 A 388 GLU TRP ARG GLY PRO VAL LEU ASP ASP LEU ARG ASP PHE SEQRES 13 A 388 GLN PHE VAL GLU PRO PHE ALA THR ALA LEU VAL GLU ASP SEQRES 14 A 388 LYS VAL LEU ALA HIS THR ALA LYS ALA GLU ALA GLU ILE SEQRES 15 A 388 ALA CYS GLY ARG ALA SER ALA VAL ILE ALA GLU LEU GLU SEQRES 16 A 388 ALA LEU THR PHE GLU HIS PRO TYR ARG GLU PRO LEU TRP SEQRES 17 A 388 THR GLN LEU ILE THR ALA TYR TYR LEU SER ASP ARG GLN SEQRES 18 A 388 SER ASP ALA LEU GLY ALA TYR ARG ARG VAL LYS THR THR SEQRES 19 A 388 LEU ALA ASP ASP LEU GLY ILE ASP PRO GLY PRO THR LEU SEQRES 20 A 388 ARG ALA LEU ASN GLU ARG ILE LEU ARG GLN GLN PRO LEU SEQRES 21 A 388 ASP ALA LYS LYS SER ALA LYS THR THR ALA ALA GLY THR SEQRES 22 A 388 VAL THR VAL LEU ASP GLN ARG THR MET ALA SER GLY GLN SEQRES 23 A 388 GLN ALA VAL ALA TYR LEU HIS ASP ILE ALA SER GLY ARG SEQRES 24 A 388 GLY TYR PRO LEU GLN ALA ALA ALA THR ARG ILE GLY ARG SEQRES 25 A 388 LEU HIS ASP ASN ASP ILE VAL LEU ASP SER ALA ASN VAL SEQRES 26 A 388 SER ARG HIS HIS ALA VAL ILE VAL ASP THR GLY THR ASN SEQRES 27 A 388 TYR VAL ILE ASN ASP LEU ARG SER SER ASN GLY VAL HIS SEQRES 28 A 388 VAL GLN HIS GLU ARG ILE ARG SER ALA VAL THR LEU ASN SEQRES 29 A 388 ASP GLY ASP HIS ILE ARG ILE CYS ASP HIS GLU PHE THR SEQRES 30 A 388 PHE GLN ILE SER ALA GLY THR HIS GLY GLY THR SEQRES 1 B 388 MET ALA GLY SER ALA THR VAL GLU LYS ARG LEU ASP PHE SEQRES 2 B 388 GLY LEU LEU GLY PRO LEU GLN MET THR ILE ASP GLY THR SEQRES 3 B 388 PRO VAL PRO SER GLY THR PRO LYS GLN ARG ALA VAL LEU SEQRES 4 B 388 ALA MET LEU VAL ILE ASN ARG ASN ARG PRO VAL GLY VAL SEQRES 5 B 388 ASP ALA LEU ILE THR ALA LEU TRP GLU GLU TRP PRO PRO SEQRES 6 B 388 SER GLY ALA ARG ALA SER ILE HIS SER TYR VAL SER ASN SEQRES 7 B 388 LEU ARG LYS LEU LEU GLY GLY ALA GLY ILE ASP PRO ARG SEQRES 8 B 388 VAL VAL LEU ALA ALA ALA PRO PRO GLY TYR ARG LEU SER SEQRES 9 B 388 ILE PRO ASP ASN THR CYS ASP LEU GLY ARG PHE VAL ALA SEQRES 10 B 388 GLU LYS THR ALA GLY VAL HIS ALA ALA ALA ALA GLY ARG SEQRES 11 B 388 PHE GLU GLN ALA SER ARG HIS LEU SER ALA ALA LEU ARG SEQRES 12 B 388 GLU TRP ARG GLY PRO VAL LEU ASP ASP LEU ARG ASP PHE SEQRES 13 B 388 GLN PHE VAL GLU PRO PHE ALA THR ALA LEU VAL GLU ASP SEQRES 14 B 388 LYS VAL LEU ALA HIS THR ALA LYS ALA GLU ALA GLU ILE SEQRES 15 B 388 ALA CYS GLY ARG ALA SER ALA VAL ILE ALA GLU LEU GLU SEQRES 16 B 388 ALA LEU THR PHE GLU HIS PRO TYR ARG GLU PRO LEU TRP SEQRES 17 B 388 THR GLN LEU ILE THR ALA TYR TYR LEU SER ASP ARG GLN SEQRES 18 B 388 SER ASP ALA LEU GLY ALA TYR ARG ARG VAL LYS THR THR SEQRES 19 B 388 LEU ALA ASP ASP LEU GLY ILE ASP PRO GLY PRO THR LEU SEQRES 20 B 388 ARG ALA LEU ASN GLU ARG ILE LEU ARG GLN GLN PRO LEU SEQRES 21 B 388 ASP ALA LYS LYS SER ALA LYS THR THR ALA ALA GLY THR SEQRES 22 B 388 VAL THR VAL LEU ASP GLN ARG THR MET ALA SER GLY GLN SEQRES 23 B 388 GLN ALA VAL ALA TYR LEU HIS ASP ILE ALA SER GLY ARG SEQRES 24 B 388 GLY TYR PRO LEU GLN ALA ALA ALA THR ARG ILE GLY ARG SEQRES 25 B 388 LEU HIS ASP ASN ASP ILE VAL LEU ASP SER ALA ASN VAL SEQRES 26 B 388 SER ARG HIS HIS ALA VAL ILE VAL ASP THR GLY THR ASN SEQRES 27 B 388 TYR VAL ILE ASN ASP LEU ARG SER SER ASN GLY VAL HIS SEQRES 28 B 388 VAL GLN HIS GLU ARG ILE ARG SER ALA VAL THR LEU ASN SEQRES 29 B 388 ASP GLY ASP HIS ILE ARG ILE CYS ASP HIS GLU PHE THR SEQRES 30 B 388 PHE GLN ILE SER ALA GLY THR HIS GLY GLY THR SEQRES 1 E 9 SER LEU GLU VAL TPO GLU ALA ASP THR SEQRES 1 F 9 SER LEU GLU VAL TPO GLU ALA ASP THR MODRES 2FF4 TPO E 5 THR PHOSPHOTHREONINE MODRES 2FF4 TPO F 5 THR PHOSPHOTHREONINE HET TPO E 5 11 HET TPO F 5 11 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 3 TPO 2(C4 H10 N O6 P) FORMUL 5 HOH *532(H2 O) HELIX 1 1 THR A 32 ASN A 45 1 14 HELIX 2 2 VAL A 52 GLU A 61 1 10 HELIX 3 3 GLY A 67 GLY A 84 1 18 HELIX 4 4 GLY A 85 GLY A 87 5 3 HELIX 5 5 ASP A 89 VAL A 93 1 5 HELIX 6 6 PRO A 106 THR A 109 5 4 HELIX 7 7 CYS A 110 ALA A 128 1 19 HELIX 8 8 ARG A 130 ARG A 143 1 14 HELIX 9 9 LEU A 150 ARG A 154 5 5 HELIX 10 10 PHE A 158 CYS A 184 1 27 HELIX 11 11 ARG A 186 HIS A 201 1 16 HELIX 12 12 ARG A 204 LEU A 217 1 14 HELIX 13 13 ARG A 220 GLY A 240 1 21 HELIX 14 14 GLY A 244 ARG A 256 1 13 HELIX 15 15 ASP A 261 THR A 281 1 21 HELIX 16 16 THR B 32 ASN B 45 1 14 HELIX 17 17 VAL B 52 GLU B 61 1 10 HELIX 18 18 GLY B 67 GLY B 84 1 18 HELIX 19 19 GLY B 85 GLY B 87 5 3 HELIX 20 20 ASP B 89 VAL B 93 1 5 HELIX 21 21 PRO B 106 THR B 109 5 4 HELIX 22 22 CYS B 110 ALA B 128 1 19 HELIX 23 23 ARG B 130 GLU B 144 1 15 HELIX 24 24 LEU B 150 ARG B 154 5 5 HELIX 25 25 PHE B 158 CYS B 184 1 27 HELIX 26 26 ARG B 186 HIS B 201 1 16 HELIX 27 27 ARG B 204 SER B 218 1 15 HELIX 28 28 ARG B 220 GLY B 240 1 21 HELIX 29 29 GLY B 244 ARG B 256 1 13 HELIX 30 30 ASP B 261 THR B 281 1 21 SHEET 1 A 3 LEU A 11 GLY A 14 0 SHEET 2 A 3 GLN A 20 ILE A 23 -1 O THR A 22 N ASP A 12 SHEET 3 A 3 THR A 26 PRO A 27 -1 O THR A 26 N ILE A 23 SHEET 1 B 3 PRO A 49 GLY A 51 0 SHEET 2 B 3 GLY A 100 LEU A 103 -1 O TYR A 101 N VAL A 50 SHEET 3 B 3 LEU A 94 ALA A 96 -1 N ALA A 95 O ARG A 102 SHEET 1 C 6 GLY A 300 PRO A 302 0 SHEET 2 C 6 TYR A 291 ASP A 294 -1 N LEU A 292 O TYR A 301 SHEET 3 C 6 HIS A 374 GLN A 379 -1 O GLN A 379 N TYR A 291 SHEET 4 C 6 HIS A 368 ILE A 371 -1 N ILE A 369 O PHE A 376 SHEET 5 C 6 HIS A 351 VAL A 352 -1 N HIS A 351 O ARG A 370 SHEET 6 C 6 GLU A 355 ARG A 356 -1 O GLU A 355 N VAL A 352 SHEET 1 D 5 ILE A 318 VAL A 319 0 SHEET 2 D 5 ALA A 307 GLY A 311 1 N ARG A 309 O ILE A 318 SHEET 3 D 5 ALA A 330 ASP A 334 -1 O ALA A 330 N ILE A 310 SHEET 4 D 5 TYR A 339 ASP A 343 -1 O ASN A 342 N VAL A 331 SHEET 5 D 5 ALA A 360 LEU A 363 -1 O LEU A 363 N TYR A 339 SHEET 1 E 3 LEU B 11 GLY B 14 0 SHEET 2 E 3 GLN B 20 ILE B 23 -1 O THR B 22 N ASP B 12 SHEET 3 E 3 THR B 26 PRO B 27 -1 O THR B 26 N ILE B 23 SHEET 1 F 3 VAL B 50 GLY B 51 0 SHEET 2 F 3 GLY B 100 LEU B 103 -1 O TYR B 101 N VAL B 50 SHEET 3 F 3 LEU B 94 ALA B 97 -1 N ALA B 97 O GLY B 100 SHEET 1 G 6 GLY B 300 PRO B 302 0 SHEET 2 G 6 TYR B 291 ASP B 294 -1 N LEU B 292 O TYR B 301 SHEET 3 G 6 HIS B 374 GLN B 379 -1 O GLN B 379 N TYR B 291 SHEET 4 G 6 HIS B 368 ILE B 371 -1 N ILE B 369 O PHE B 376 SHEET 5 G 6 HIS B 351 VAL B 352 -1 N HIS B 351 O ARG B 370 SHEET 6 G 6 GLU B 355 ARG B 356 -1 O GLU B 355 N VAL B 352 SHEET 1 H 5 ILE B 318 VAL B 319 0 SHEET 2 H 5 ALA B 307 GLY B 311 1 N ARG B 309 O ILE B 318 SHEET 3 H 5 ALA B 330 ASP B 334 -1 O ALA B 330 N ILE B 310 SHEET 4 H 5 TYR B 339 ASP B 343 -1 O VAL B 340 N VAL B 333 SHEET 5 H 5 VAL B 361 THR B 362 -1 O VAL B 361 N ILE B 341 LINK C VAL E 4 N TPO E 5 1555 1555 1.33 LINK C TPO E 5 N GLU E 6 1555 1555 1.33 LINK C VAL F 4 N TPO F 5 1555 1555 1.34 LINK C TPO F 5 N GLU F 6 1555 1555 1.33 CRYST1 162.390 82.040 81.080 90.00 115.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006158 0.000000 0.002921 0.00000 SCALE2 0.000000 0.012189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013650 0.00000