HEADER LYASE 19-DEC-05 2FFC TITLE CRYSTAL STRUCTURE OF PLASMODIUM VIVAX OROTIDINE-MONOPHOSPHATE- TITLE 2 DECARBOXYL UMP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5-MONOPHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.3.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 CODON PLUS RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P28-LIC-THROMBIN DERIVED FROM PET28 KEYWDS DECARBOXYLASE, PV-PF10_0225, SGC, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,G.WASNEY,M.VEDADI,J.LEW,I.KOEIERADZKI,Y.ZHAO,A.M.EDWARDS, AUTHOR 2 M.MELONE,C.H.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,A.BOCHKAREV,R.HUI, AUTHOR 3 M.AMANI,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2FFC 1 REMARK REVDAT 4 13-JUL-11 2FFC 1 VERSN REVDAT 3 24-FEB-09 2FFC 1 VERSN REVDAT 2 26-DEC-06 2FFC 1 JRNL REVDAT 1 17-JAN-06 2FFC 0 JRNL AUTH M.VEDADI,J.LEW,J.ARTZ,M.AMANI,Y.ZHAO,A.DONG,G.A.WASNEY, JRNL AUTH 2 M.GAO,T.HILLS,S.BROKX,W.QIU,S.SHARMA,A.DIASSITI,Z.ALAM, JRNL AUTH 3 M.MELONE,A.MULICHAK,A.WERNIMONT,J.BRAY,P.LOPPNAU, JRNL AUTH 4 O.PLOTNIKOVA,K.NEWBERRY,E.SUNDARARAJAN,S.HOUSTON,J.WALKER, JRNL AUTH 5 W.TEMPEL,A.BOCHKAREV,I.KOZIERADZKI,A.EDWARDS,C.ARROWSMITH, JRNL AUTH 6 D.ROOS,K.KAIN,R.HUI JRNL TITL GENOME-SCALE PROTEIN EXPRESSION AND STRUCTURAL BIOLOGY OF JRNL TITL 2 PLASMODIUM FALCIPARUM AND RELATED APICOMPLEXAN ORGANISMS. JRNL REF MOL.BIOCHEM.PARASITOL. V. 151 100 2007 JRNL REFN ISSN 0166-6851 JRNL PMID 17125854 JRNL DOI 10.1016/J.MOLBIOPARA.2006.10.011 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 36127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.93000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.442 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2652 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3570 ; 1.585 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 5.747 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;36.829 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;14.237 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1996 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1362 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1864 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 277 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1636 ; 1.179 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2546 ; 1.719 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1157 ; 2.746 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1024 ; 4.199 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI 111 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : 0.61200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V. 1.3.1 REMARK 200 STARTING MODEL: 2AQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0% PEG 4K, 0.2M NAOAC, 0.1M TRIS REMARK 280 HCL, VAPOR DIFFUSION, PH 8.5, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.90850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.79400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.90850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.79400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A5505 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5506 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 SER A 73 REMARK 465 SER A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 ASN A 77 REMARK 465 SER A 78 REMARK 465 SER A 79 REMARK 465 SER A 80 REMARK 465 GLY A 81 REMARK 465 LYS A 82 REMARK 465 GLY A 83 REMARK 465 GLU A 98 REMARK 465 GLN A 352 REMARK 465 GLU A 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 181 O HOH A 5507 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 100 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 276 64.80 -106.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A 5203 REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SUITABLE DATABASE REFERENCES WERE REMARK 999 FOUND AT TIME OF PROCESSING DBREF 2FFC A 1 353 PDB 2FFC 2FFC 1 353 SEQRES 1 A 353 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 353 LEU VAL PRO ARG GLY SER ASN LEU LYS ILE LYS LEU GLN SEQRES 3 A 353 LYS ARG ARG ASP GLU VAL ASN THR CYS LEU CYS ILE GLY SEQRES 4 A 353 LEU ASP PRO ASP GLU ALA ASP ILE LYS SER PHE MET GLN SEQRES 5 A 353 SER GLU LYS GLN ASN GLY TYR GLN SER VAL LYS LYS ASN SEQRES 6 A 353 LEU SER ASN SER GLY SER SER SER SER SER SER ASN SER SEQRES 7 A 353 SER SER GLY LYS GLY GLU LEU PHE ALA PRO GLN MET GLY SEQRES 8 A 353 GLY GLN MET LEU LEU ALA GLU THR PRO PRO LYS GLU ALA SEQRES 9 A 353 GLN GLU LYS ASP GLU PHE PHE TYR PHE PHE ASN HIS PHE SEQRES 10 A 353 CYS PHE TYR ILE ILE ASN GLU THR LYS GLU TYR ALA LEU SEQRES 11 A 353 ALA TYR LYS MET ASN PHE ALA PHE TYR LEU PRO TYR GLY SEQRES 12 A 353 SER LEU GLY VAL ASP VAL LEU LYS ASN VAL PHE ASP TYR SEQRES 13 A 353 LEU HIS HIS LEU ASN VAL PRO THR ILE LEU ASP ILE LYS SEQRES 14 A 353 MET ASN ASP ILE GLY ASN THR VAL LYS HIS TYR ARG LYS SEQRES 15 A 353 PHE ILE PHE ASP TYR LEU ARG SER ASP SER CYS THR ALA SEQRES 16 A 353 ASN ILE TYR MET GLY THR GLN MET LEU ARG ASP ILE CYS SEQRES 17 A 353 LEU ASP GLU GLU CYS LYS ARG TYR TYR SER THR PHE VAL SEQRES 18 A 353 LEU VAL LYS THR THR ASN ALA ASP SER HIS ILE PHE GLN SEQRES 19 A 353 ASN ARG LEU SER LEU ASP GLY LYS GLU ALA TYR VAL VAL SEQRES 20 A 353 ILE ALA GLU GLU VAL GLN LYS MET ALA LYS GLN LEU HIS SEQRES 21 A 353 LEU GLU GLU ASN GLY GLU PHE VAL GLY PHE VAL VAL GLY SEQRES 22 A 353 ALA ASN CYS TYR ASP GLU ILE LYS LYS ILE ARG GLU LEU SEQRES 23 A 353 PHE PRO ASP CYS TYR ILE LEU ALA PRO GLY VAL GLY ALA SEQRES 24 A 353 GLN LYS GLY ASP LEU ARG LYS MET LEU CYS ASN GLY TYR SEQRES 25 A 353 SER LYS ASN TYR GLU LYS VAL LEU ILE ASN VAL GLY ARG SEQRES 26 A 353 ALA ILE THR LYS SER GLY SER PRO GLN GLN ALA ALA ARG SEQRES 27 A 353 GLU TYR HIS GLN GLN ILE LYS GLU VAL LEU ALA GLU LEU SEQRES 28 A 353 GLN GLU HET U5P A5203 21 HETNAM U5P URIDINE-5'-MONOPHOSPHATE FORMUL 2 U5P C9 H13 N2 O9 P FORMUL 3 HOH *318(H2 O) HELIX 1 1 ASN A 20 ASN A 33 1 14 HELIX 2 2 ASP A 43 GLY A 58 1 16 HELIX 3 3 TYR A 59 ASN A 68 1 10 HELIX 4 4 GLY A 91 ALA A 97 1 7 HELIX 5 5 GLN A 105 LYS A 126 1 22 HELIX 6 6 GLU A 127 ALA A 129 5 3 HELIX 7 7 ALA A 137 LEU A 140 5 4 HELIX 8 8 GLY A 143 ASN A 161 1 19 HELIX 9 9 ILE A 173 ASP A 186 1 14 HELIX 10 10 MET A 203 LEU A 209 1 7 HELIX 11 11 SER A 230 ASN A 235 1 6 HELIX 12 12 ALA A 244 LEU A 259 1 16 HELIX 13 13 LEU A 261 GLY A 265 5 5 HELIX 14 14 CYS A 276 PHE A 287 1 12 HELIX 15 15 ASP A 303 TYR A 312 1 10 HELIX 16 16 ASN A 315 GLU A 317 5 3 HELIX 17 17 GLY A 324 LYS A 329 1 6 HELIX 18 18 SER A 332 LEU A 351 1 20 SHEET 1 A 9 LEU A 36 LEU A 40 0 SHEET 2 A 9 ALA A 131 ASN A 135 1 O LYS A 133 N LEU A 40 SHEET 3 A 9 THR A 164 MET A 170 1 O ASP A 167 N MET A 134 SHEET 4 A 9 SER A 192 ALA A 195 1 O SER A 192 N LEU A 166 SHEET 5 A 9 SER A 218 LYS A 224 1 O PHE A 220 N ALA A 195 SHEET 6 A 9 VAL A 268 VAL A 272 1 O GLY A 269 N THR A 219 SHEET 7 A 9 ILE A 292 ALA A 294 1 O LEU A 293 N PHE A 270 SHEET 8 A 9 VAL A 319 VAL A 323 1 O LEU A 320 N ILE A 292 SHEET 9 A 9 LEU A 36 LEU A 40 1 N CYS A 37 O VAL A 323 SHEET 1 B 2 SER A 238 LEU A 239 0 SHEET 2 B 2 LYS A 242 GLU A 243 -1 O LYS A 242 N LEU A 239 SITE 1 AC1 19 ASP A 41 LYS A 133 ASN A 135 ASP A 167 SITE 2 AC1 19 LYS A 169 ASP A 172 ILE A 173 THR A 176 SITE 3 AC1 19 THR A 225 THR A 226 PRO A 295 GLN A 300 SITE 4 AC1 19 GLY A 324 ARG A 325 HOH A5204 HOH A5205 SITE 5 AC1 19 HOH A5206 HOH A5213 HOH A5217 CRYST1 81.817 69.588 59.338 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012222 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016853 0.00000