HEADER LIGASE 20-DEC-05 2FFW TITLE SOLUTION STRUCTURE OF THE RBCC/TRIM B-BOX1 DOMAIN OF HUMAN TITLE 2 MID1: B-BOX WITH A RING COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIDLINE-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B-BOX 1 DOMAIN (RESIDUES: 87 - 164); COMPND 5 SYNONYM: TRIPARTITE MOTIF PROTEIN 18, PUTATIVE COMPND 6 TRANSCRIPTION FACTOR XPRF, MIDIN, RING FINGER PROTEIN 59; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MID1, FXY, RNF59, TRIM18, XPRF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2 KEYWDS B-BOX, MID1, RING FINGER, ZINC-FINGER, LIGASE EXPDTA SOLUTION NMR NUMMDL 13 AUTHOR M.A.MASSIAH,B.N.SIMMONS,K.M.SHORT,T.C.COX REVDAT 2 24-FEB-09 2FFW 1 VERSN REVDAT 1 09-MAY-06 2FFW 0 JRNL AUTH M.A.MASSIAH,B.N.SIMMONS,K.M.SHORT,T.C.COX JRNL TITL SOLUTION STRUCTURE OF THE RBCC/TRIM B-BOX1 DOMAIN JRNL TITL 2 OF HUMAN MID1: B-BOX WITH A RING. JRNL REF J.MOL.BIOL. V. 358 532 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16529770 JRNL DOI 10.1016/J.JMB.2006.02.009 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : P GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FFW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-06. REMARK 100 THE RCSB ID CODE IS RCSB035830. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 294 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 300 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.75 MM U-15N,13C PROTEIN; 50 REMARK 210 MM TRIS-HCL, 300 MM NACL, 50 REMARK 210 MM BETA-MERCAPTOETHANOL, 5 MM REMARK 210 ZNCL2, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA, HNCACB, CBCACONH, 3D_ REMARK 210 15N-SEPARATED_ROESY, 3D_13C- REMARK 210 SEPARATED_NOESY, HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRPIPE, SPARKY REMARK 210 SPARKY-MAC10.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 13 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE DATA REMARK 210 FOR BACKBONE ATOM ASSIGNMENT AND NOES FROM 13C- AND 15N-EDITED REMARK 210 NOESY SPECTRA REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 96 69.99 -157.62 REMARK 500 1 SER A 98 98.52 -65.61 REMARK 500 1 GLU A 103 104.55 -162.67 REMARK 500 1 PHE A 106 76.05 -154.95 REMARK 500 1 ALA A 108 -178.43 -63.11 REMARK 500 1 SER A 113 -66.34 -161.42 REMARK 500 1 GLU A 115 -68.14 -130.25 REMARK 500 1 LYS A 116 -173.57 63.08 REMARK 500 1 ASP A 123 26.81 -147.55 REMARK 500 1 ASP A 125 85.53 60.43 REMARK 500 1 CYS A 142 -159.24 -101.57 REMARK 500 1 HIS A 150 72.95 -113.50 REMARK 500 1 PRO A 151 85.03 -69.77 REMARK 500 1 LYS A 154 161.32 62.68 REMARK 500 1 PHE A 156 43.37 -162.01 REMARK 500 1 THR A 157 46.84 -90.24 REMARK 500 2 LYS A 88 -171.76 60.75 REMARK 500 2 SER A 92 91.43 -163.88 REMARK 500 2 PRO A 97 87.84 -69.82 REMARK 500 2 GLU A 103 97.11 59.95 REMARK 500 2 ASP A 107 -174.02 -60.76 REMARK 500 2 ALA A 114 88.11 63.57 REMARK 500 2 GLU A 115 -67.79 -130.41 REMARK 500 2 ASP A 123 27.22 -148.53 REMARK 500 2 ASP A 125 85.70 61.66 REMARK 500 2 CYS A 142 -160.45 -104.10 REMARK 500 2 HIS A 150 72.56 -113.71 REMARK 500 2 LYS A 154 161.42 62.60 REMARK 500 2 PHE A 156 66.67 -161.61 REMARK 500 2 THR A 157 40.60 -96.06 REMARK 500 3 SER A 98 -70.70 -95.70 REMARK 500 3 ARG A 104 147.08 -174.86 REMARK 500 3 ALA A 105 -68.44 -142.97 REMARK 500 3 ALA A 108 162.98 62.88 REMARK 500 3 ASN A 109 62.69 -174.80 REMARK 500 3 THR A 110 158.47 64.13 REMARK 500 3 ALA A 114 176.71 62.00 REMARK 500 3 GLU A 115 -68.10 -121.20 REMARK 500 3 ASP A 123 26.52 -151.05 REMARK 500 3 ASP A 125 86.01 63.32 REMARK 500 3 CYS A 142 -159.26 -101.54 REMARK 500 3 HIS A 150 72.74 -113.57 REMARK 500 3 ASN A 152 -174.47 179.75 REMARK 500 3 LYS A 154 161.14 62.59 REMARK 500 3 HIS A 159 -169.13 -78.74 REMARK 500 4 ASN A 95 -171.91 -69.03 REMARK 500 4 ASN A 109 100.84 -59.81 REMARK 500 4 SER A 113 -172.81 -60.45 REMARK 500 4 GLU A 115 -68.20 -96.77 REMARK 500 4 ASP A 123 26.26 -140.12 REMARK 500 4 ASP A 125 85.78 63.41 REMARK 500 4 CYS A 142 -159.70 -100.75 REMARK 500 4 HIS A 150 74.08 -113.08 REMARK 500 4 ASN A 152 108.25 64.20 REMARK 500 4 LYS A 154 85.53 -177.67 REMARK 500 4 PHE A 156 60.79 -150.13 REMARK 500 5 PRO A 94 91.46 -69.73 REMARK 500 5 SER A 96 70.26 -159.34 REMARK 500 5 ARG A 101 91.18 -163.78 REMARK 500 5 THR A 110 -179.25 56.74 REMARK 500 5 SER A 113 78.60 -101.37 REMARK 500 5 ASP A 123 25.89 -145.20 REMARK 500 5 ASP A 125 85.76 63.39 REMARK 500 5 THR A 133 105.47 -161.56 REMARK 500 5 CYS A 142 -159.11 -101.38 REMARK 500 5 HIS A 150 76.41 -112.41 REMARK 500 5 ASN A 152 -169.83 63.49 REMARK 500 5 LYS A 154 112.75 65.07 REMARK 500 5 ARG A 160 -169.93 -109.95 REMARK 500 6 GLU A 99 90.87 -161.35 REMARK 500 6 PHE A 106 53.07 -106.91 REMARK 500 6 ALA A 114 27.13 -159.78 REMARK 500 6 ASP A 123 25.77 -143.51 REMARK 500 6 ASP A 125 85.94 63.51 REMARK 500 6 VAL A 131 17.22 -145.75 REMARK 500 6 HIS A 150 73.63 -113.19 REMARK 500 6 ASN A 152 111.95 64.89 REMARK 500 6 LYS A 153 111.62 -160.58 REMARK 500 6 LYS A 154 85.27 -174.77 REMARK 500 6 PHE A 156 -70.01 -148.45 REMARK 500 6 THR A 157 43.12 37.47 REMARK 500 6 LEU A 161 -169.94 -169.88 REMARK 500 7 THR A 112 -51.24 -155.40 REMARK 500 7 SER A 113 -94.49 48.26 REMARK 500 7 ALA A 114 25.70 -149.07 REMARK 500 7 ASP A 123 26.40 -141.73 REMARK 500 7 ASP A 125 85.48 60.27 REMARK 500 7 CYS A 142 -159.75 -102.71 REMARK 500 7 HIS A 150 74.26 -113.07 REMARK 500 7 LYS A 153 -77.33 -121.84 REMARK 500 7 PHE A 156 67.49 -162.29 REMARK 500 7 THR A 157 46.37 -90.63 REMARK 500 7 GLU A 163 73.23 54.34 REMARK 500 8 LYS A 88 -174.95 57.23 REMARK 500 8 SER A 90 73.52 -105.67 REMARK 500 8 PRO A 94 98.67 -69.75 REMARK 500 8 THR A 100 -44.07 -132.27 REMARK 500 8 ARG A 104 -61.59 -108.59 REMARK 500 8 PHE A 106 -71.99 -161.47 REMARK 500 8 ASP A 107 -75.43 69.61 REMARK 500 8 ALA A 108 -72.35 -174.61 REMARK 500 8 SER A 113 99.39 -63.97 REMARK 500 8 ASP A 123 25.24 -142.97 REMARK 500 8 ASP A 125 86.29 63.53 REMARK 500 8 CYS A 142 -158.13 -101.64 REMARK 500 8 HIS A 150 72.98 -113.26 REMARK 500 8 PRO A 151 90.72 -69.75 REMARK 500 8 LYS A 154 161.32 62.77 REMARK 500 8 PHE A 156 53.04 -157.39 REMARK 500 8 THR A 157 37.98 -94.48 REMARK 500 9 SER A 92 57.33 -119.47 REMARK 500 9 ALA A 114 169.79 63.68 REMARK 500 9 GLU A 115 -68.03 -100.74 REMARK 500 9 ASP A 123 26.02 -145.36 REMARK 500 9 ASP A 125 85.72 62.53 REMARK 500 9 CYS A 142 -158.67 -100.11 REMARK 500 9 HIS A 150 73.40 -113.27 REMARK 500 9 LYS A 154 163.35 61.61 REMARK 500 9 PHE A 156 62.23 32.95 REMARK 500 9 GLU A 163 73.19 52.31 REMARK 500 10 ALA A 89 144.80 -177.96 REMARK 500 10 PRO A 94 -176.39 -69.76 REMARK 500 10 ARG A 104 173.53 62.36 REMARK 500 10 ALA A 105 -48.73 -166.55 REMARK 500 10 PHE A 106 162.23 63.22 REMARK 500 10 GLU A 115 -68.08 -131.68 REMARK 500 10 ASP A 123 26.19 -141.04 REMARK 500 10 ASP A 125 85.71 63.35 REMARK 500 10 CYS A 142 -160.48 -101.52 REMARK 500 10 HIS A 150 76.07 -112.84 REMARK 500 10 PRO A 151 84.75 -69.86 REMARK 500 10 ASN A 152 175.24 -54.43 REMARK 500 10 LYS A 153 -79.39 -128.80 REMARK 500 10 LYS A 154 104.33 177.13 REMARK 500 10 PHE A 156 -55.95 -139.15 REMARK 500 10 THR A 157 43.36 37.32 REMARK 500 11 GLU A 99 77.54 -112.72 REMARK 500 11 THR A 100 40.55 -106.83 REMARK 500 11 ARG A 101 129.44 -171.10 REMARK 500 11 ALA A 108 92.59 56.67 REMARK 500 11 ALA A 114 -178.30 56.88 REMARK 500 11 GLU A 115 -68.08 -129.48 REMARK 500 11 LYS A 116 171.92 62.14 REMARK 500 11 ASP A 123 26.39 -143.11 REMARK 500 11 ASP A 125 85.52 61.75 REMARK 500 11 VAL A 131 20.51 -140.29 REMARK 500 11 HIS A 150 74.07 -113.26 REMARK 500 11 PRO A 151 -170.01 -69.74 REMARK 500 11 ASN A 152 155.60 64.67 REMARK 500 11 LYS A 154 137.62 66.41 REMARK 500 11 PHE A 156 -74.11 -135.93 REMARK 500 11 THR A 157 -31.90 178.05 REMARK 500 11 LEU A 161 -169.82 -165.31 REMARK 500 12 SER A 90 83.43 -178.54 REMARK 500 12 PRO A 97 93.92 -69.76 REMARK 500 12 ASN A 109 40.56 -151.75 REMARK 500 12 THR A 112 -170.99 51.46 REMARK 500 12 ALA A 114 -33.83 -178.94 REMARK 500 12 GLU A 115 -69.54 71.58 REMARK 500 12 ASP A 123 26.28 -148.21 REMARK 500 12 ASP A 125 85.71 63.20 REMARK 500 12 THR A 133 104.33 -161.01 REMARK 500 12 CYS A 142 -159.93 -101.61 REMARK 500 12 HIS A 150 73.71 -113.34 REMARK 500 12 ASN A 152 137.90 66.74 REMARK 500 12 LYS A 153 115.62 -179.52 REMARK 500 12 LYS A 154 85.44 -175.42 REMARK 500 12 PHE A 156 60.99 -150.44 REMARK 500 12 ARG A 160 -169.32 -110.00 REMARK 500 13 SER A 96 71.37 -118.44 REMARK 500 13 ALA A 108 108.26 -161.63 REMARK 500 13 MET A 111 45.28 -102.94 REMARK 500 13 THR A 112 72.19 -172.54 REMARK 500 13 GLU A 115 -69.45 71.55 REMARK 500 13 VAL A 117 97.18 -68.37 REMARK 500 13 ASP A 123 26.58 -147.49 REMARK 500 13 ASP A 125 85.65 60.59 REMARK 500 13 CYS A 142 -158.94 -101.82 REMARK 500 13 HIS A 150 74.27 -112.62 REMARK 500 13 ASN A 152 -174.09 179.71 REMARK 500 13 LYS A 154 160.87 62.92 REMARK 500 13 PHE A 156 43.54 -160.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 119 SG REMARK 620 2 CYS A 122 SG 110.6 REMARK 620 3 CYS A 142 SG 112.1 108.7 REMARK 620 4 CYS A 145 SG 109.8 107.6 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 150 NE2 REMARK 620 2 HIS A 159 ND1 85.1 REMARK 620 3 CYS A 134 SG 118.8 117.9 REMARK 620 4 CYS A 137 SG 113.4 112.8 107.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 DBREF 2FFW A 87 164 UNP O15344 TRI18_HUMAN 87 164 SEQRES 1 A 78 GLN LYS ALA SER VAL SER GLY PRO ASN SER PRO SER GLU SEQRES 2 A 78 THR ARG ARG GLU ARG ALA PHE ASP ALA ASN THR MET THR SEQRES 3 A 78 SER ALA GLU LYS VAL LEU CYS GLN PHE CYS ASP GLN ASP SEQRES 4 A 78 PRO ALA GLN ASP ALA VAL LYS THR CYS VAL THR CYS GLU SEQRES 5 A 78 VAL SER TYR CYS ASP GLU CYS LEU LYS ALA THR HIS PRO SEQRES 6 A 78 ASN LYS LYS PRO PHE THR GLY HIS ARG LEU ILE GLU PRO HET ZN A 200 1 HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 142 HIS A 150 1 9 SHEET 1 A 2 LYS A 132 CYS A 134 0 SHEET 2 A 2 VAL A 139 TYR A 141 -1 O TYR A 141 N LYS A 132 LINK ZN ZN A 200 SG CYS A 119 1555 1555 2.30 LINK ZN ZN A 200 SG CYS A 122 1555 1555 2.38 LINK ZN ZN A 200 SG CYS A 142 1555 1555 2.36 LINK ZN ZN A 200 SG CYS A 145 1555 1555 2.39 LINK ZN ZN A 201 NE2 HIS A 150 1555 1555 2.14 LINK ZN ZN A 201 ND1 HIS A 159 1555 1555 2.14 LINK ZN ZN A 201 SG CYS A 134 1555 1555 2.30 LINK ZN ZN A 201 SG CYS A 137 1555 1555 2.44 CISPEP 1 ASP A 125 PRO A 126 1 0.03 CISPEP 2 LYS A 154 PRO A 155 1 -0.06 CISPEP 3 ASP A 125 PRO A 126 2 0.01 CISPEP 4 LYS A 154 PRO A 155 2 -0.09 CISPEP 5 ASP A 125 PRO A 126 3 0.14 CISPEP 6 LYS A 154 PRO A 155 3 -0.05 CISPEP 7 ASP A 125 PRO A 126 4 -0.03 CISPEP 8 LYS A 154 PRO A 155 4 -0.15 CISPEP 9 ASP A 125 PRO A 126 5 -0.07 CISPEP 10 LYS A 154 PRO A 155 5 0.10 CISPEP 11 ASP A 125 PRO A 126 6 -0.01 CISPEP 12 LYS A 154 PRO A 155 6 -0.16 CISPEP 13 ASP A 125 PRO A 126 7 0.13 CISPEP 14 LYS A 154 PRO A 155 7 0.00 CISPEP 15 ASP A 125 PRO A 126 8 0.07 CISPEP 16 LYS A 154 PRO A 155 8 -0.14 CISPEP 17 ASP A 125 PRO A 126 9 0.00 CISPEP 18 LYS A 154 PRO A 155 9 -0.12 CISPEP 19 ASP A 125 PRO A 126 10 0.04 CISPEP 20 LYS A 154 PRO A 155 10 -0.15 CISPEP 21 ASP A 125 PRO A 126 11 -0.02 CISPEP 22 LYS A 154 PRO A 155 11 -0.12 CISPEP 23 ASP A 125 PRO A 126 12 0.05 CISPEP 24 LYS A 154 PRO A 155 12 -0.14 CISPEP 25 ASP A 125 PRO A 126 13 -0.04 CISPEP 26 LYS A 154 PRO A 155 13 -0.10 SITE 1 AC1 4 CYS A 119 CYS A 122 CYS A 142 CYS A 145 SITE 1 AC2 4 CYS A 134 CYS A 137 HIS A 150 HIS A 159 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1