data_2FG9 # _entry.id 2FG9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FG9 pdb_00002fg9 10.2210/pdb2fg9/pdb RCSB RCSB035843 ? ? WWPDB D_1000035843 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 359120 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2FG9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-12-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of (np_811990.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.20 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.length_a 134.000 _cell.length_b 134.000 _cell.length_c 134.000 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2FG9 _cell.pdbx_unique_axis ? _cell.Z_PDB 48 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 211 _symmetry.space_group_name_H-M 'I 4 3 2' _symmetry.entry_id 2FG9 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '5-nitroimidazole antibiotic resistance protein' 21013.602 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'FLAVIN-ADENINE DINUCLEOTIDE' 785.550 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 water nat water 18.015 46 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)KTIVIEDKQRIESIILQADACFVGITDLEGNPYVVP(MSE)NFGYENDTLYL HSGPEGGKIE(MSE)LQRNNNVCITFSLGHKLVYQHKQVACSYS(MSE)RSESA(MSE)CRGKVEFIED(MSE)EEKRHA LDII(MSE)RHYTKDQFSYSDPAVRNVKVWKVPVDQ(MSE)TGKVFGLRADEKP ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMKTIVIEDKQRIESIILQADACFVGITDLEGNPYVVPMNFGYENDTLYLHSGPEGGKIEML QRNNNVCITFSLGHKLVYQHKQVACSYSMRSESAMCRGKVEFIEDMEEKRHALDIIMRHYTKDQFSYSDPAVRNVKVWKV PVDQMTGKVFGLRADEKP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 359120 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 LYS n 1 22 THR n 1 23 ILE n 1 24 VAL n 1 25 ILE n 1 26 GLU n 1 27 ASP n 1 28 LYS n 1 29 GLN n 1 30 ARG n 1 31 ILE n 1 32 GLU n 1 33 SER n 1 34 ILE n 1 35 ILE n 1 36 LEU n 1 37 GLN n 1 38 ALA n 1 39 ASP n 1 40 ALA n 1 41 CYS n 1 42 PHE n 1 43 VAL n 1 44 GLY n 1 45 ILE n 1 46 THR n 1 47 ASP n 1 48 LEU n 1 49 GLU n 1 50 GLY n 1 51 ASN n 1 52 PRO n 1 53 TYR n 1 54 VAL n 1 55 VAL n 1 56 PRO n 1 57 MSE n 1 58 ASN n 1 59 PHE n 1 60 GLY n 1 61 TYR n 1 62 GLU n 1 63 ASN n 1 64 ASP n 1 65 THR n 1 66 LEU n 1 67 TYR n 1 68 LEU n 1 69 HIS n 1 70 SER n 1 71 GLY n 1 72 PRO n 1 73 GLU n 1 74 GLY n 1 75 GLY n 1 76 LYS n 1 77 ILE n 1 78 GLU n 1 79 MSE n 1 80 LEU n 1 81 GLN n 1 82 ARG n 1 83 ASN n 1 84 ASN n 1 85 ASN n 1 86 VAL n 1 87 CYS n 1 88 ILE n 1 89 THR n 1 90 PHE n 1 91 SER n 1 92 LEU n 1 93 GLY n 1 94 HIS n 1 95 LYS n 1 96 LEU n 1 97 VAL n 1 98 TYR n 1 99 GLN n 1 100 HIS n 1 101 LYS n 1 102 GLN n 1 103 VAL n 1 104 ALA n 1 105 CYS n 1 106 SER n 1 107 TYR n 1 108 SER n 1 109 MSE n 1 110 ARG n 1 111 SER n 1 112 GLU n 1 113 SER n 1 114 ALA n 1 115 MSE n 1 116 CYS n 1 117 ARG n 1 118 GLY n 1 119 LYS n 1 120 VAL n 1 121 GLU n 1 122 PHE n 1 123 ILE n 1 124 GLU n 1 125 ASP n 1 126 MSE n 1 127 GLU n 1 128 GLU n 1 129 LYS n 1 130 ARG n 1 131 HIS n 1 132 ALA n 1 133 LEU n 1 134 ASP n 1 135 ILE n 1 136 ILE n 1 137 MSE n 1 138 ARG n 1 139 HIS n 1 140 TYR n 1 141 THR n 1 142 LYS n 1 143 ASP n 1 144 GLN n 1 145 PHE n 1 146 SER n 1 147 TYR n 1 148 SER n 1 149 ASP n 1 150 PRO n 1 151 ALA n 1 152 VAL n 1 153 ARG n 1 154 ASN n 1 155 VAL n 1 156 LYS n 1 157 VAL n 1 158 TRP n 1 159 LYS n 1 160 VAL n 1 161 PRO n 1 162 VAL n 1 163 ASP n 1 164 GLN n 1 165 MSE n 1 166 THR n 1 167 GLY n 1 168 LYS n 1 169 VAL n 1 170 PHE n 1 171 GLY n 1 172 LEU n 1 173 ARG n 1 174 ALA n 1 175 ASP n 1 176 GLU n 1 177 LYS n 1 178 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacteroides _entity_src_gen.pdbx_gene_src_gene np_811990.1 _entity_src_gen.gene_src_species 'Bacteroides thetaiotaomicron' _entity_src_gen.gene_src_strain VPI-5482 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226186 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAO78184 _struct_ref.pdbx_db_accession 29340391 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKTIVIEDKQRIESIILQADACFVGITDLEGNPYVVPMNFGYENDTLYLHSGPEGGKIEMLQRNNNVCITFSLGHKLVYQ HKQVACSYSMRSESAMCRGKVEFIEDMEEKRHALDIIMRHYTKDQFSYSDPAVRNVKVWKVPVDQMTGKVFGLRADEKP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FG9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 178 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 29340391 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FG9 MSE A 1 ? GB 29340391 ? ? 'expression tag' -18 1 1 2FG9 GLY A 2 ? GB 29340391 ? ? 'expression tag' -17 2 1 2FG9 SER A 3 ? GB 29340391 ? ? 'expression tag' -16 3 1 2FG9 ASP A 4 ? GB 29340391 ? ? 'expression tag' -15 4 1 2FG9 LYS A 5 ? GB 29340391 ? ? 'expression tag' -14 5 1 2FG9 ILE A 6 ? GB 29340391 ? ? 'expression tag' -13 6 1 2FG9 HIS A 7 ? GB 29340391 ? ? 'expression tag' -12 7 1 2FG9 HIS A 8 ? GB 29340391 ? ? 'expression tag' -11 8 1 2FG9 HIS A 9 ? GB 29340391 ? ? 'expression tag' -10 9 1 2FG9 HIS A 10 ? GB 29340391 ? ? 'expression tag' -9 10 1 2FG9 HIS A 11 ? GB 29340391 ? ? 'expression tag' -8 11 1 2FG9 HIS A 12 ? GB 29340391 ? ? 'expression tag' -7 12 1 2FG9 GLU A 13 ? GB 29340391 ? ? 'expression tag' -6 13 1 2FG9 ASN A 14 ? GB 29340391 ? ? 'expression tag' -5 14 1 2FG9 LEU A 15 ? GB 29340391 ? ? 'expression tag' -4 15 1 2FG9 TYR A 16 ? GB 29340391 ? ? 'expression tag' -3 16 1 2FG9 PHE A 17 ? GB 29340391 ? ? 'expression tag' -2 17 1 2FG9 GLN A 18 ? GB 29340391 ? ? 'expression tag' -1 18 1 2FG9 GLY A 19 ? GB 29340391 ? ? 'expression tag' 0 19 1 2FG9 MSE A 20 ? GB 29340391 MET 1 'modified residue' 1 20 1 2FG9 MSE A 57 ? GB 29340391 MET 38 'modified residue' 38 21 1 2FG9 MSE A 79 ? GB 29340391 MET 60 'modified residue' 60 22 1 2FG9 MSE A 109 ? GB 29340391 MET 90 'modified residue' 90 23 1 2FG9 MSE A 115 ? GB 29340391 MET 96 'modified residue' 96 24 1 2FG9 MSE A 126 ? GB 29340391 MET 107 'modified residue' 107 25 1 2FG9 MSE A 137 ? GB 29340391 MET 118 'modified residue' 118 26 1 2FG9 MSE A 165 ? GB 29340391 MET 146 'modified residue' 146 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 FAD non-polymer . 'FLAVIN-ADENINE DINUCLEOTIDE' ? 'C27 H33 N9 O15 P2' 785.550 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2FG9 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 50.21 _exptl_crystal.density_Matthews 2.49 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 7.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M (NH4)2HPO4, 20.0% PEG-3350, No Buffer, pH 7.9, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2005-09-28 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9798 1.0 2 0.9797 1.0 3 1.0163 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9798, 0.9797, 1.0163' _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 2FG9 _reflns.d_resolution_low 28.570 _reflns.d_resolution_high 2.20 _reflns.number_obs 10216 _reflns.percent_possible_obs 98.200 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy 11.2 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 22.580 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_all _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.28 2.20 20515 92.000 0.755 ? 10.18 1854 3.550 ? 92.0 ? ? 1 1 2.37 2.28 21963 98.200 0.755 ? ? 1914 3.960 ? ? ? ? 2 1 2.48 2.37 22691 98.800 0.755 ? ? 1976 5.200 ? ? ? ? 3 1 2.61 2.48 22300 98.500 0.755 ? ? 1937 7.220 ? ? ? ? 4 1 2.77 2.61 22184 98.500 0.755 ? ? 1922 10.110 ? ? ? ? 5 1 2.98 2.77 22376 99.200 0.755 ? ? 1938 14.650 ? ? ? ? 6 1 3.28 2.98 22897 99.000 0.755 ? ? 1983 24.620 ? ? ? ? 7 1 3.76 3.28 23027 99.400 0.755 ? ? 1995 38.230 ? ? ? ? 8 1 4.72 3.76 22359 99.300 0.755 ? ? 1949 54.750 ? ? ? ? 9 1 28.570 4.72 22007 99.000 0.755 ? ? 2009 60.580 ? ? ? ? 10 1 # _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 28.570 _refine.ls_percent_reflns_obs 99.770 _refine.ls_number_reflns_obs 10216 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.224 _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.245 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 516 _refine.B_iso_mean 47.821 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.pdbx_overall_ESU_R 0.283 _refine.pdbx_overall_ESU_R_Free 0.206 _refine.overall_SU_ML 0.179 _refine.overall_SU_B 14.012 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct MAD _refine.entry_id 2FG9 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.22392 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. DENSITY FOR RESIDUES 81-86 AND 158-159 IS DISORDERED AND NOT MODELED. 3. ASSIGNMENT OF NI IS BASED ON COORDINATION NUMBER AND GEOMETRY. 4. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. ; _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1296 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 1400 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 28.570 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1430 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1227 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1946 1.731 1.975 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2844 0.797 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 172 7.273 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 65 35.251 24.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 228 16.972 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 19.604 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 206 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1581 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 285 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 256 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1181 0.188 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 674 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 902 0.094 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 50 0.169 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 42 0.163 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 100 0.233 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 10 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 874 1.306 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 348 0.219 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1367 1.696 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 673 2.144 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 579 3.359 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.258 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.730 _refine_ls_shell.number_reflns_R_work 735 _refine_ls_shell.R_factor_R_work 0.288 _refine_ls_shell.R_factor_R_free 0.359 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2FG9 _struct.title ;CRYSTAL STRUCTURE OF A PUTATIVE 5-NITROIMIDAZOLE ANTIBIOTIC RESISTANCE PROTEIN (BT_3078) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.20 A RESOLUTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PUTATIVE 5-NITROIMIDAZOLE ANTIBIOTIC RESISTANCE PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 2FG9 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ;ASSIGNMENT OF THE BIOLOGICAL SUBUNIT AS A HEXAMER IS SUPPORTED BY DATA FROM SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING. HOWEVER, THE INTERACTIONS FORMING THE HEXAMER PRIMARILY INVOLVE THE EXPRESSION TAG, SO IT IS POSSIBLE THAT THE OLIGIMERIZATION STATE OF THE WILD-TYPE PROTEIN IS DIMERIC. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 27 ? ALA A 38 ? ASP A 8 ALA A 19 1 ? 12 HELX_P HELX_P2 2 GLY A 74 ? ASN A 83 ? GLY A 55 ASN A 64 1 ? 10 HELX_P HELX_P3 3 ASP A 125 ? HIS A 139 ? ASP A 106 HIS A 120 1 ? 15 HELX_P HELX_P4 4 SER A 148 ? ASN A 154 ? SER A 129 ASN A 135 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A LYS 21 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale3 covale both ? A PRO 56 C ? ? ? 1_555 A MSE 57 N ? ? A PRO 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A MSE 57 C ? ? ? 1_555 A ASN 58 N ? ? A MSE 38 A ASN 39 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? A GLU 78 C ? ? ? 1_555 A MSE 79 N ? ? A GLU 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A MSE 79 C ? ? ? 1_555 A LEU 80 N ? ? A MSE 60 A LEU 61 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A SER 108 C ? ? ? 1_555 A MSE 109 N ? ? A SER 89 A MSE 90 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale8 covale both ? A MSE 109 C ? ? ? 1_555 A ARG 110 N ? ? A MSE 90 A ARG 91 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? A ALA 114 C ? ? ? 1_555 A MSE 115 N ? ? A ALA 95 A MSE 96 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? A MSE 115 C ? ? ? 1_555 A CYS 116 N ? ? A MSE 96 A CYS 97 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? A ASP 125 C ? ? ? 1_555 A MSE 126 N ? ? A ASP 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale12 covale both ? A MSE 126 C ? ? ? 1_555 A GLU 127 N ? ? A MSE 107 A GLU 108 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale both ? A ILE 136 C ? ? ? 1_555 A MSE 137 N ? ? A ILE 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale14 covale both ? A MSE 137 C ? ? ? 1_555 A ARG 138 N ? ? A MSE 118 A ARG 119 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale15 covale both ? A GLN 164 C ? ? ? 1_555 A MSE 165 N ? ? A GLN 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale16 covale both ? A MSE 165 C ? ? ? 1_555 A THR 166 N ? ? A MSE 146 A THR 147 1_555 ? ? ? ? ? ? ? 1.328 ? ? metalc1 metalc ? ? A HIS 8 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS -11 A NI 160 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc2 metalc ? ? A HIS 8 NE2 ? ? ? 5_555 B NI . NI ? ? A HIS -11 A NI 160 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc3 metalc ? ? A HIS 8 NE2 ? ? ? 9_555 B NI . NI ? ? A HIS -11 A NI 160 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc4 metalc ? ? A HIS 10 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS -9 A NI 160 1_555 ? ? ? ? ? ? ? 2.235 ? ? metalc5 metalc ? ? A HIS 10 NE2 ? ? ? 5_555 B NI . NI ? ? A HIS -9 A NI 160 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc6 metalc ? ? A HIS 10 NE2 ? ? ? 9_555 B NI . NI ? ? A HIS -9 A NI 160 1_555 ? ? ? ? ? ? ? 2.234 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 73 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 54 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 74 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 55 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -16.53 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 13 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel A 12 13 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PRO A 52 ? MSE A 57 ? PRO A 33 MSE A 38 A 2 CYS A 41 ? THR A 46 ? CYS A 22 THR A 27 A 3 ASN A 85 ? SER A 91 ? ASN A 66 SER A 72 A 4 SER A 106 ? LYS A 119 ? SER A 87 LYS A 100 A 5 LYS A 95 ? GLN A 99 ? LYS A 76 GLN A 80 A 6 SER A 106 ? LYS A 119 ? SER A 87 LYS A 100 A 7 LYS A 156 ? ASP A 175 ? LYS A 137 ASP A 156 A 8 TYR A 16 ? ILE A 25 ? TYR A -3 ILE A 6 A 9 LYS A 156 ? ASP A 175 ? LYS A 137 ASP A 156 A 10 GLU A 121 ? ILE A 123 ? GLU A 102 ILE A 104 A 11 LYS A 156 ? ASP A 175 ? LYS A 137 ASP A 156 A 12 THR A 65 ? SER A 70 ? THR A 46 SER A 51 A 13 GLY A 60 ? GLU A 62 ? GLY A 41 GLU A 43 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 55 ? O VAL A 36 N VAL A 43 ? N VAL A 24 A 2 3 N GLY A 44 ? N GLY A 25 O CYS A 87 ? O CYS A 68 A 3 4 N ILE A 88 ? N ILE A 69 O CYS A 116 ? O CYS A 97 A 4 5 O ARG A 110 ? O ARG A 91 N LYS A 95 ? N LYS A 76 A 5 6 N LYS A 95 ? N LYS A 76 O ARG A 110 ? O ARG A 91 A 6 7 N TYR A 107 ? N TYR A 88 O ALA A 174 ? O ALA A 155 A 7 8 O ASP A 175 ? O ASP A 156 N TYR A 16 ? N TYR A -3 A 8 9 N TYR A 16 ? N TYR A -3 O ASP A 175 ? O ASP A 156 A 9 10 O LYS A 159 ? O LYS A 140 N GLU A 121 ? N GLU A 102 A 10 11 N GLU A 121 ? N GLU A 102 O LYS A 159 ? O LYS A 140 A 11 12 O LYS A 156 ? O LYS A 137 N SER A 70 ? N SER A 51 A 12 13 O THR A 65 ? O THR A 46 N GLU A 62 ? N GLU A 43 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 160 ? 6 'BINDING SITE FOR RESIDUE NI A 160' AC2 Software A FAD 161 ? 23 'BINDING SITE FOR RESIDUE FAD A 161' AC3 Software A EDO 162 ? 5 'BINDING SITE FOR RESIDUE EDO A 162' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 10 ? HIS A -9 . ? 9_555 ? 2 AC1 6 HIS A 10 ? HIS A -9 . ? 1_555 ? 3 AC1 6 HIS A 10 ? HIS A -9 . ? 5_555 ? 4 AC1 6 HIS A 8 ? HIS A -11 . ? 5_555 ? 5 AC1 6 HIS A 8 ? HIS A -11 . ? 1_555 ? 6 AC1 6 HIS A 8 ? HIS A -11 . ? 9_555 ? 7 AC2 23 GLU A 26 ? GLU A 7 . ? 22_555 ? 8 AC2 23 ALA A 40 ? ALA A 21 . ? 43_555 ? 9 AC2 23 TYR A 53 ? TYR A 34 . ? 43_555 ? 10 AC2 23 VAL A 55 ? VAL A 36 . ? 43_555 ? 11 AC2 23 PRO A 56 ? PRO A 37 . ? 43_555 ? 12 AC2 23 MSE A 57 ? MSE A 38 . ? 43_555 ? 13 AC2 23 ASN A 58 ? ASN A 39 . ? 43_555 ? 14 AC2 23 HIS A 69 ? HIS A 50 . ? 43_555 ? 15 AC2 23 SER A 70 ? SER A 51 . ? 43_555 ? 16 AC2 23 GLY A 75 ? GLY A 56 . ? 43_555 ? 17 AC2 23 LYS A 76 ? LYS A 57 . ? 43_555 ? 18 AC2 23 SER A 91 ? SER A 72 . ? 1_555 ? 19 AC2 23 SER A 111 ? SER A 92 . ? 1_555 ? 20 AC2 23 SER A 113 ? SER A 94 . ? 1_555 ? 21 AC2 23 MSE A 115 ? MSE A 96 . ? 1_555 ? 22 AC2 23 ARG A 117 ? ARG A 98 . ? 1_555 ? 23 AC2 23 THR A 166 ? THR A 147 . ? 1_555 ? 24 AC2 23 GLY A 167 ? GLY A 148 . ? 1_555 ? 25 AC2 23 LYS A 168 ? LYS A 149 . ? 1_555 ? 26 AC2 23 PHE A 170 ? PHE A 151 . ? 1_555 ? 27 AC2 23 EDO D . ? EDO A 162 . ? 1_555 ? 28 AC2 23 HOH E . ? HOH A 168 . ? 1_555 ? 29 AC2 23 HOH E . ? HOH A 204 . ? 1_555 ? 30 AC3 5 THR A 22 ? THR A 3 . ? 1_555 ? 31 AC3 5 SER A 70 ? SER A 51 . ? 43_555 ? 32 AC3 5 GLY A 71 ? GLY A 52 . ? 43_555 ? 33 AC3 5 LYS A 76 ? LYS A 57 . ? 43_555 ? 34 AC3 5 FAD C . ? FAD A 161 . ? 1_555 ? # _atom_sites.entry_id 2FG9 _atom_sites.fract_transf_matrix[1][1] 0.00746 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.00746 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00746 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 -12 HIS HIS A . n A 1 8 HIS 8 -11 -11 HIS HIS A . n A 1 9 HIS 9 -10 -10 HIS HIS A . n A 1 10 HIS 10 -9 -9 HIS HIS A . n A 1 11 HIS 11 -8 -8 HIS HIS A . n A 1 12 HIS 12 -7 -7 HIS HIS A . n A 1 13 GLU 13 -6 -6 GLU GLU A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 LYS 21 2 2 LYS LYS A . n A 1 22 THR 22 3 3 THR THR A . n A 1 23 ILE 23 4 4 ILE ILE A . n A 1 24 VAL 24 5 5 VAL VAL A . n A 1 25 ILE 25 6 6 ILE ILE A . n A 1 26 GLU 26 7 7 GLU GLU A . n A 1 27 ASP 27 8 8 ASP ASP A . n A 1 28 LYS 28 9 9 LYS LYS A . n A 1 29 GLN 29 10 10 GLN GLN A . n A 1 30 ARG 30 11 11 ARG ARG A . n A 1 31 ILE 31 12 12 ILE ILE A . n A 1 32 GLU 32 13 13 GLU GLU A . n A 1 33 SER 33 14 14 SER SER A . n A 1 34 ILE 34 15 15 ILE ILE A . n A 1 35 ILE 35 16 16 ILE ILE A . n A 1 36 LEU 36 17 17 LEU LEU A . n A 1 37 GLN 37 18 18 GLN GLN A . n A 1 38 ALA 38 19 19 ALA ALA A . n A 1 39 ASP 39 20 20 ASP ASP A . n A 1 40 ALA 40 21 21 ALA ALA A . n A 1 41 CYS 41 22 22 CYS CYS A . n A 1 42 PHE 42 23 23 PHE PHE A . n A 1 43 VAL 43 24 24 VAL VAL A . n A 1 44 GLY 44 25 25 GLY GLY A . n A 1 45 ILE 45 26 26 ILE ILE A . n A 1 46 THR 46 27 27 THR THR A . n A 1 47 ASP 47 28 28 ASP ASP A . n A 1 48 LEU 48 29 29 LEU LEU A . n A 1 49 GLU 49 30 30 GLU GLU A . n A 1 50 GLY 50 31 31 GLY GLY A . n A 1 51 ASN 51 32 32 ASN ASN A . n A 1 52 PRO 52 33 33 PRO PRO A . n A 1 53 TYR 53 34 34 TYR TYR A . n A 1 54 VAL 54 35 35 VAL VAL A . n A 1 55 VAL 55 36 36 VAL VAL A . n A 1 56 PRO 56 37 37 PRO PRO A . n A 1 57 MSE 57 38 38 MSE MSE A . n A 1 58 ASN 58 39 39 ASN ASN A . n A 1 59 PHE 59 40 40 PHE PHE A . n A 1 60 GLY 60 41 41 GLY GLY A . n A 1 61 TYR 61 42 42 TYR TYR A . n A 1 62 GLU 62 43 43 GLU GLU A . n A 1 63 ASN 63 44 44 ASN ASN A . n A 1 64 ASP 64 45 45 ASP ASP A . n A 1 65 THR 65 46 46 THR THR A . n A 1 66 LEU 66 47 47 LEU LEU A . n A 1 67 TYR 67 48 48 TYR TYR A . n A 1 68 LEU 68 49 49 LEU LEU A . n A 1 69 HIS 69 50 50 HIS HIS A . n A 1 70 SER 70 51 51 SER SER A . n A 1 71 GLY 71 52 52 GLY GLY A . n A 1 72 PRO 72 53 53 PRO PRO A . n A 1 73 GLU 73 54 54 GLU GLU A . n A 1 74 GLY 74 55 55 GLY GLY A . n A 1 75 GLY 75 56 56 GLY GLY A . n A 1 76 LYS 76 57 57 LYS LYS A . n A 1 77 ILE 77 58 58 ILE ILE A . n A 1 78 GLU 78 59 59 GLU GLU A . n A 1 79 MSE 79 60 60 MSE MSE A . n A 1 80 LEU 80 61 61 LEU LEU A . n A 1 81 GLN 81 62 62 GLN GLN A . n A 1 82 ARG 82 63 63 ARG ARG A . n A 1 83 ASN 83 64 64 ASN ASN A . n A 1 84 ASN 84 65 65 ASN ASN A . n A 1 85 ASN 85 66 66 ASN ASN A . n A 1 86 VAL 86 67 67 VAL VAL A . n A 1 87 CYS 87 68 68 CYS CYS A . n A 1 88 ILE 88 69 69 ILE ILE A . n A 1 89 THR 89 70 70 THR THR A . n A 1 90 PHE 90 71 71 PHE PHE A . n A 1 91 SER 91 72 72 SER SER A . n A 1 92 LEU 92 73 73 LEU LEU A . n A 1 93 GLY 93 74 74 GLY GLY A . n A 1 94 HIS 94 75 75 HIS HIS A . n A 1 95 LYS 95 76 76 LYS LYS A . n A 1 96 LEU 96 77 77 LEU LEU A . n A 1 97 VAL 97 78 78 VAL VAL A . n A 1 98 TYR 98 79 79 TYR TYR A . n A 1 99 GLN 99 80 80 GLN GLN A . n A 1 100 HIS 100 81 81 HIS HIS A . n A 1 101 LYS 101 82 ? ? ? A . n A 1 102 GLN 102 83 ? ? ? A . n A 1 103 VAL 103 84 ? ? ? A . n A 1 104 ALA 104 85 ? ? ? A . n A 1 105 CYS 105 86 86 CYS CYS A . n A 1 106 SER 106 87 87 SER SER A . n A 1 107 TYR 107 88 88 TYR TYR A . n A 1 108 SER 108 89 89 SER SER A . n A 1 109 MSE 109 90 90 MSE MSE A . n A 1 110 ARG 110 91 91 ARG ARG A . n A 1 111 SER 111 92 92 SER SER A . n A 1 112 GLU 112 93 93 GLU GLU A . n A 1 113 SER 113 94 94 SER SER A . n A 1 114 ALA 114 95 95 ALA ALA A . n A 1 115 MSE 115 96 96 MSE MSE A . n A 1 116 CYS 116 97 97 CYS CYS A . n A 1 117 ARG 117 98 98 ARG ARG A . n A 1 118 GLY 118 99 99 GLY GLY A . n A 1 119 LYS 119 100 100 LYS LYS A . n A 1 120 VAL 120 101 101 VAL VAL A . n A 1 121 GLU 121 102 102 GLU GLU A . n A 1 122 PHE 122 103 103 PHE PHE A . n A 1 123 ILE 123 104 104 ILE ILE A . n A 1 124 GLU 124 105 105 GLU GLU A . n A 1 125 ASP 125 106 106 ASP ASP A . n A 1 126 MSE 126 107 107 MSE MSE A . n A 1 127 GLU 127 108 108 GLU GLU A . n A 1 128 GLU 128 109 109 GLU GLU A . n A 1 129 LYS 129 110 110 LYS LYS A . n A 1 130 ARG 130 111 111 ARG ARG A . n A 1 131 HIS 131 112 112 HIS HIS A . n A 1 132 ALA 132 113 113 ALA ALA A . n A 1 133 LEU 133 114 114 LEU LEU A . n A 1 134 ASP 134 115 115 ASP ASP A . n A 1 135 ILE 135 116 116 ILE ILE A . n A 1 136 ILE 136 117 117 ILE ILE A . n A 1 137 MSE 137 118 118 MSE MSE A . n A 1 138 ARG 138 119 119 ARG ARG A . n A 1 139 HIS 139 120 120 HIS HIS A . n A 1 140 TYR 140 121 121 TYR TYR A . n A 1 141 THR 141 122 122 THR THR A . n A 1 142 LYS 142 123 123 LYS LYS A . n A 1 143 ASP 143 124 124 ASP ASP A . n A 1 144 GLN 144 125 125 GLN GLN A . n A 1 145 PHE 145 126 126 PHE PHE A . n A 1 146 SER 146 127 127 SER SER A . n A 1 147 TYR 147 128 128 TYR TYR A . n A 1 148 SER 148 129 129 SER SER A . n A 1 149 ASP 149 130 130 ASP ASP A . n A 1 150 PRO 150 131 131 PRO PRO A . n A 1 151 ALA 151 132 132 ALA ALA A . n A 1 152 VAL 152 133 133 VAL VAL A . n A 1 153 ARG 153 134 134 ARG ARG A . n A 1 154 ASN 154 135 135 ASN ASN A . n A 1 155 VAL 155 136 136 VAL VAL A . n A 1 156 LYS 156 137 137 LYS LYS A . n A 1 157 VAL 157 138 138 VAL VAL A . n A 1 158 TRP 158 139 139 TRP TRP A . n A 1 159 LYS 159 140 140 LYS LYS A . n A 1 160 VAL 160 141 141 VAL VAL A . n A 1 161 PRO 161 142 142 PRO PRO A . n A 1 162 VAL 162 143 143 VAL VAL A . n A 1 163 ASP 163 144 144 ASP ASP A . n A 1 164 GLN 164 145 145 GLN GLN A . n A 1 165 MSE 165 146 146 MSE MSE A . n A 1 166 THR 166 147 147 THR THR A . n A 1 167 GLY 167 148 148 GLY GLY A . n A 1 168 LYS 168 149 149 LYS LYS A . n A 1 169 VAL 169 150 150 VAL VAL A . n A 1 170 PHE 170 151 151 PHE PHE A . n A 1 171 GLY 171 152 152 GLY GLY A . n A 1 172 LEU 172 153 153 LEU LEU A . n A 1 173 ARG 173 154 154 ARG ARG A . n A 1 174 ALA 174 155 155 ALA ALA A . n A 1 175 ASP 175 156 156 ASP ASP A . n A 1 176 GLU 176 157 157 GLU GLU A . n A 1 177 LYS 177 158 ? ? ? A . n A 1 178 PRO 178 159 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 160 1 NI NI A . C 3 FAD 1 161 2 FAD FAD A . D 4 EDO 1 162 3 EDO EDO A . E 5 HOH 1 163 4 HOH HOH A . E 5 HOH 2 164 5 HOH HOH A . E 5 HOH 3 165 6 HOH HOH A . E 5 HOH 4 166 7 HOH HOH A . E 5 HOH 5 167 8 HOH HOH A . E 5 HOH 6 168 9 HOH HOH A . E 5 HOH 7 169 10 HOH HOH A . E 5 HOH 8 170 11 HOH HOH A . E 5 HOH 9 171 12 HOH HOH A . E 5 HOH 10 172 13 HOH HOH A . E 5 HOH 11 173 14 HOH HOH A . E 5 HOH 12 174 15 HOH HOH A . E 5 HOH 13 175 16 HOH HOH A . E 5 HOH 14 176 17 HOH HOH A . E 5 HOH 15 177 18 HOH HOH A . E 5 HOH 16 178 19 HOH HOH A . E 5 HOH 17 179 20 HOH HOH A . E 5 HOH 18 180 21 HOH HOH A . E 5 HOH 19 181 22 HOH HOH A . E 5 HOH 20 182 23 HOH HOH A . E 5 HOH 21 183 24 HOH HOH A . E 5 HOH 22 184 25 HOH HOH A . E 5 HOH 23 185 26 HOH HOH A . E 5 HOH 24 186 27 HOH HOH A . E 5 HOH 25 187 28 HOH HOH A . E 5 HOH 26 188 29 HOH HOH A . E 5 HOH 27 189 30 HOH HOH A . E 5 HOH 28 190 31 HOH HOH A . E 5 HOH 29 191 32 HOH HOH A . E 5 HOH 30 192 33 HOH HOH A . E 5 HOH 31 193 34 HOH HOH A . E 5 HOH 32 194 35 HOH HOH A . E 5 HOH 33 195 36 HOH HOH A . E 5 HOH 34 196 37 HOH HOH A . E 5 HOH 35 197 38 HOH HOH A . E 5 HOH 36 198 39 HOH HOH A . E 5 HOH 37 199 40 HOH HOH A . E 5 HOH 38 200 41 HOH HOH A . E 5 HOH 39 201 42 HOH HOH A . E 5 HOH 40 202 43 HOH HOH A . E 5 HOH 41 203 44 HOH HOH A . E 5 HOH 42 204 45 HOH HOH A . E 5 HOH 43 205 46 HOH HOH A . E 5 HOH 44 206 47 HOH HOH A . E 5 HOH 45 207 48 HOH HOH A . E 5 HOH 46 208 49 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 57 A MSE 38 ? MET SELENOMETHIONINE 3 A MSE 79 A MSE 60 ? MET SELENOMETHIONINE 4 A MSE 109 A MSE 90 ? MET SELENOMETHIONINE 5 A MSE 115 A MSE 96 ? MET SELENOMETHIONINE 6 A MSE 126 A MSE 107 ? MET SELENOMETHIONINE 7 A MSE 137 A MSE 118 ? MET SELENOMETHIONINE 8 A MSE 165 A MSE 146 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 26990 ? 1 MORE -189 ? 1 'SSA (A^2)' 39020 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 38_555 -y+1/2,-x+1/2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 67.0000000000 -1.0000000000 0.0000000000 0.0000000000 67.0000000000 0.0000000000 0.0000000000 -1.0000000000 67.0000000000 5 'crystal symmetry operation' 43_555 -x+1/2,-z+1/2,-y+1/2 -1.0000000000 0.0000000000 0.0000000000 67.0000000000 0.0000000000 0.0000000000 -1.0000000000 67.0000000000 0.0000000000 -1.0000000000 0.0000000000 67.0000000000 6 'crystal symmetry operation' 48_555 -z+1/2,-y+1/2,-x+1/2 0.0000000000 0.0000000000 -1.0000000000 67.0000000000 0.0000000000 -1.0000000000 0.0000000000 67.0000000000 -1.0000000000 0.0000000000 0.0000000000 67.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id NI _pdbx_struct_special_symmetry.auth_seq_id 160 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id NI _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 8 ? A HIS -11 ? 1_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 8 ? A HIS -11 ? 5_555 89.5 ? 2 NE2 ? A HIS 8 ? A HIS -11 ? 1_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 8 ? A HIS -11 ? 9_555 89.5 ? 3 NE2 ? A HIS 8 ? A HIS -11 ? 5_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 8 ? A HIS -11 ? 9_555 89.5 ? 4 NE2 ? A HIS 8 ? A HIS -11 ? 1_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 1_555 92.0 ? 5 NE2 ? A HIS 8 ? A HIS -11 ? 5_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 1_555 93.6 ? 6 NE2 ? A HIS 8 ? A HIS -11 ? 9_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 1_555 176.6 ? 7 NE2 ? A HIS 8 ? A HIS -11 ? 1_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 5_555 176.5 ? 8 NE2 ? A HIS 8 ? A HIS -11 ? 5_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 5_555 92.1 ? 9 NE2 ? A HIS 8 ? A HIS -11 ? 9_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 5_555 93.6 ? 10 NE2 ? A HIS 10 ? A HIS -9 ? 1_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 5_555 84.8 ? 11 NE2 ? A HIS 8 ? A HIS -11 ? 1_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 9_555 93.6 ? 12 NE2 ? A HIS 8 ? A HIS -11 ? 5_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 9_555 176.5 ? 13 NE2 ? A HIS 8 ? A HIS -11 ? 9_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 9_555 92.1 ? 14 NE2 ? A HIS 10 ? A HIS -9 ? 1_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 9_555 84.8 ? 15 NE2 ? A HIS 10 ? A HIS -9 ? 5_555 NI ? B NI . ? A NI 160 ? 1_555 NE2 ? A HIS 10 ? A HIS -9 ? 9_555 84.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-10 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' 'Author supporting evidence' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_assembly_auth_evidence 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 9 5 'Structure model' '_pdbx_struct_conn_angle.value' 10 5 'Structure model' '_struct_conn.pdbx_dist_value' 11 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 5 'Structure model' '_struct_conn.ptnr1_symmetry' 19 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_symmetry' 26 5 'Structure model' '_struct_ref_seq_dif.details' 27 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 40.3046 _pdbx_refine_tls.origin_y 15.5919 _pdbx_refine_tls.origin_z 49.4336 _pdbx_refine_tls.T[1][1] -0.1806 _pdbx_refine_tls.T[2][2] -0.1715 _pdbx_refine_tls.T[3][3] -0.0559 _pdbx_refine_tls.T[1][2] -0.0510 _pdbx_refine_tls.T[1][3] -0.0552 _pdbx_refine_tls.T[2][3] 0.1867 _pdbx_refine_tls.L[1][1] 1.8804 _pdbx_refine_tls.L[2][2] 1.2117 _pdbx_refine_tls.L[3][3] 2.6313 _pdbx_refine_tls.L[1][2] 0.3735 _pdbx_refine_tls.L[1][3] 1.0221 _pdbx_refine_tls.L[2][3] 0.2688 _pdbx_refine_tls.S[1][1] 0.0898 _pdbx_refine_tls.S[1][2] -0.1507 _pdbx_refine_tls.S[1][3] -0.4012 _pdbx_refine_tls.S[2][1] -0.0842 _pdbx_refine_tls.S[2][2] -0.0059 _pdbx_refine_tls.S[2][3] -0.2156 _pdbx_refine_tls.S[3][1] -0.0851 _pdbx_refine_tls.S[3][2] 0.0382 _pdbx_refine_tls.S[3][3] -0.0839 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -12 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 7 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 157 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 176 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 XSCALE . ? program 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 2 PDB_EXTRACT 1.601 'Jan. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 XDS . ? ? ? ? 'data reduction' ? ? ? 4 SHARP . ? ? ? ? phasing ? ? ? 5 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). ASSIGNMENT OF THE BIOLOGICAL SUBUNIT AS A HEXAMER IS SUPPORTED BY DATA FROM SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING. HOWEVER, THE INTERACTIONS FORMING THE HEXAMER PRIMARILY INVOLVE THE EXPRESSION TAG, SO IT IS POSSIBLE THAT THE OLIGIMERIZATION STATE OF THE WILD-TYPE PROTEIN IS DIMERIC. ; # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 38 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 38 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.729 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.221 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.034 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id -1 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -139.22 _pdbx_validate_torsion.psi -142.68 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLY _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 0 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 MSE _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 1 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 146.88 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -12 ? ND1 ? A HIS 7 ND1 2 1 Y 1 A HIS -12 ? CD2 ? A HIS 7 CD2 3 1 Y 1 A HIS -12 ? CE1 ? A HIS 7 CE1 4 1 Y 1 A HIS -12 ? NE2 ? A HIS 7 NE2 5 1 Y 1 A GLU -6 ? CG ? A GLU 13 CG 6 1 Y 1 A GLU -6 ? CD ? A GLU 13 CD 7 1 Y 1 A GLU -6 ? OE1 ? A GLU 13 OE1 8 1 Y 1 A GLU -6 ? OE2 ? A GLU 13 OE2 9 1 Y 1 A ASN -5 ? CG ? A ASN 14 CG 10 1 Y 1 A ASN -5 ? OD1 ? A ASN 14 OD1 11 1 Y 1 A ASN -5 ? ND2 ? A ASN 14 ND2 12 1 Y 1 A LYS 2 ? CD ? A LYS 21 CD 13 1 Y 1 A LYS 2 ? CE ? A LYS 21 CE 14 1 Y 1 A LYS 2 ? NZ ? A LYS 21 NZ 15 1 Y 1 A ILE 4 ? CD1 ? A ILE 23 CD1 16 1 Y 1 A GLU 7 ? CD ? A GLU 26 CD 17 1 Y 1 A GLU 7 ? OE1 ? A GLU 26 OE1 18 1 Y 1 A GLU 7 ? OE2 ? A GLU 26 OE2 19 1 Y 1 A ASP 20 ? CG ? A ASP 39 CG 20 1 Y 1 A ASP 20 ? OD1 ? A ASP 39 OD1 21 1 Y 1 A ASP 20 ? OD2 ? A ASP 39 OD2 22 1 Y 1 A GLU 59 ? CD ? A GLU 78 CD 23 1 Y 1 A GLU 59 ? OE1 ? A GLU 78 OE1 24 1 Y 1 A GLU 59 ? OE2 ? A GLU 78 OE2 25 1 Y 1 A LYS 76 ? CE ? A LYS 95 CE 26 1 Y 1 A LYS 76 ? NZ ? A LYS 95 NZ 27 1 Y 1 A GLN 80 ? CD ? A GLN 99 CD 28 1 Y 1 A GLN 80 ? OE1 ? A GLN 99 OE1 29 1 Y 1 A GLN 80 ? NE2 ? A GLN 99 NE2 30 1 Y 1 A CYS 86 ? SG ? A CYS 105 SG 31 1 Y 1 A ARG 91 ? NE ? A ARG 110 NE 32 1 Y 1 A ARG 91 ? CZ ? A ARG 110 CZ 33 1 Y 1 A ARG 91 ? NH1 ? A ARG 110 NH1 34 1 Y 1 A ARG 91 ? NH2 ? A ARG 110 NH2 35 1 Y 1 A GLU 105 ? CD ? A GLU 124 CD 36 1 Y 1 A GLU 105 ? OE1 ? A GLU 124 OE1 37 1 Y 1 A GLU 105 ? OE2 ? A GLU 124 OE2 38 1 Y 1 A ARG 119 ? CD ? A ARG 138 CD 39 1 Y 1 A ARG 119 ? NE ? A ARG 138 NE 40 1 Y 1 A ARG 119 ? CZ ? A ARG 138 CZ 41 1 Y 1 A ARG 119 ? NH1 ? A ARG 138 NH1 42 1 Y 1 A ARG 119 ? NH2 ? A ARG 138 NH2 43 1 Y 1 A LYS 123 ? CD ? A LYS 142 CD 44 1 Y 1 A LYS 123 ? CE ? A LYS 142 CE 45 1 Y 1 A LYS 123 ? NZ ? A LYS 142 NZ 46 1 Y 1 A GLN 125 ? CG ? A GLN 144 CG 47 1 Y 1 A GLN 125 ? CD ? A GLN 144 CD 48 1 Y 1 A GLN 125 ? OE1 ? A GLN 144 OE1 49 1 Y 1 A GLN 125 ? NE2 ? A GLN 144 NE2 50 1 Y 1 A LYS 149 ? CE ? A LYS 168 CE 51 1 Y 1 A LYS 149 ? NZ ? A LYS 168 NZ 52 1 Y 1 A ARG 154 ? NE ? A ARG 173 NE 53 1 Y 1 A ARG 154 ? CZ ? A ARG 173 CZ 54 1 Y 1 A ARG 154 ? NH1 ? A ARG 173 NH1 55 1 Y 1 A ARG 154 ? NH2 ? A ARG 173 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A LYS 82 ? A LYS 101 8 1 Y 1 A GLN 83 ? A GLN 102 9 1 Y 1 A VAL 84 ? A VAL 103 10 1 Y 1 A ALA 85 ? A ALA 104 11 1 Y 1 A LYS 158 ? A LYS 177 12 1 Y 1 A PRO 159 ? A PRO 178 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'FLAVIN-ADENINE DINUCLEOTIDE' FAD 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #