HEADER LYASE 21-DEC-05 2FGD OBSLTE 10-APR-07 2FGD 2PC6 TITLE CRYSTAL STRUCTURE OF PUTATIVE ACETOLACTATE SYNTHASE-SMALL TITLE 2 SUBUNIT FROM NITROSOMONAS EUROPEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ACETOLACTATE SYNTHASE ISOZYME III COMPND 3 (SMALL SUBUNIT); COMPND 4 CHAIN: A, B, C, D; COMPND 5 EC: 4.1.3.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA ATCC 19718; SOURCE 3 STRAIN: ATCC 19718; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ACETOLACTATE SYNTHASE, REGULATORY SUBUNIT, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR J.J.PETKOWSKI,M.CHRUSZCZ,M.D.ZIMMERMAN,H.ZHENG, AUTHOR 2 M.T.CYMBOROWSKI,T.SKARINA,O.ONOPRIYENKO,A.SAVCHENKO, AUTHOR 3 A.EDWARDS,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS, AUTHOR 4 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 10-APR-07 2FGD 1 OBSLTE REVDAT 1 07-FEB-06 2FGD 0 JRNL AUTH J.J.PETKOWSKI,M.CHRUSZCZ,M.D.ZIMMERMAN,H.ZHENG, JRNL AUTH 2 M.T.CYMBOROWSKI,T.SKARINA,O.ONOPRIYENKO, JRNL AUTH 3 A.SAVCHENKO,A.EDWARDS,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ACETOLACTATE JRNL TITL 2 SYNTHASE-SMALL SUBUNIT FROM NITROSOMONAS EUROPEA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005, COOT REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1465 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2053 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 4872 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.382 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.286 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4706 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6358 ; 2.012 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 636 ; 7.841 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;36.505 ;24.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 809 ;20.218 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.319 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 793 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3412 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2298 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3319 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 313 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.047 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3229 ; 2.836 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5027 ; 3.959 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1597 ; 8.113 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1331 ;10.872 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 163 6 REMARK 3 1 B 2 B 163 6 REMARK 3 1 C 2 C 163 6 REMARK 3 1 D 4 D 163 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1043 ; 0.35 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 1043 ; 0.48 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 1043 ; 0.54 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 1043 ; 0.52 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1043 ; 3.64 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1043 ; 4.39 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 1043 ; 3.84 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 1043 ; 4.73 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2FGD COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.101 (2007-04-09) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-2006. REMARK 100 THE RCSB ID CODE IS RCSB035847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-2005 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : SI 111 CHANNEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28271 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 86.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.900 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 60.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-2000_PH, SHELXD, SHELXE, MLPHARE, DM, SOLVE_ REMARK 200 RESOLVE, O, COOT, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% TACSIMATE, 10% PEG 400, 0.1M REMARK 280 KCL, 10MM CACL2, 50 MM HEPES-NA, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 1/2-Y,1/2+X,1/2+Z REMARK 290 4555 1/2+Y,1/2-X,1/2+Z REMARK 290 5555 1/2-X,1/2+Y,1/2-Z REMARK 290 6555 1/2+X,1/2-Y,1/2-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.06150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.06150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.77950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.06150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.06150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.77950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.06150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.06150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.77950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.06150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.06150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.77950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 13 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MSE C 1 REMARK 465 GLY D -1 REMARK 465 HIS D 0 REMARK 465 MSE D 1 REMARK 465 ARG D 2 REMARK 465 HIS D 3 REMARK 465 GLY D 52 REMARK 465 PRO D 53 REMARK 465 ILE D 68 REMARK 465 GLU D 69 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 2 NE CZ NH1 NH2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 ILE A 56 CD1 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 GLN A 59 CD OE1 NE2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 66 CD CE NZ REMARK 470 ILE A 68 CD1 REMARK 470 LYS A 72 CD CE NZ REMARK 470 ILE A 74 CD1 REMARK 470 LYS A 96 CD CE NZ REMARK 470 ARG A 109 CD NE CZ NH1 NH2 REMARK 470 LEU A 124 CD1 CD2 REMARK 470 ARG A 128 NE CZ NH1 NH2 REMARK 470 GLN A 136 CD OE1 NE2 REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 ARG B 2 CD NE CZ NH1 NH2 REMARK 470 ILE B 4 CD1 REMARK 470 ILE B 5 CD1 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 GLU B 55 CB CG CD OE1 OE2 REMARK 470 ILE B 56 CD1 REMARK 470 VAL B 57 CG1 CG2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLN B 59 CG CD OE1 NE2 REMARK 470 ILE B 60 CD1 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 66 CD CE NZ REMARK 470 ILE B 68 CD1 REMARK 470 ILE B 74 CD1 REMARK 470 LYS B 96 CD CE NZ REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 ARG B 128 CD NE CZ NH1 NH2 REMARK 470 LYS B 130 CE NZ REMARK 470 GLN B 136 CD OE1 NE2 REMARK 470 ILE B 146 CD1 REMARK 470 ARG C 2 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 8 CD1 CD2 REMARK 470 GLU C 12 CD OE1 OE2 REMARK 470 LEU C 16 CG CD1 CD2 REMARK 470 VAL C 19 CG1 CG2 REMARK 470 LEU C 22 CD1 CD2 REMARK 470 SER C 24 OG REMARK 470 ALA C 25 CB REMARK 470 ARG C 26 CZ NH1 NH2 REMARK 470 TYR C 28 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN C 29 CB CG OD1 ND2 REMARK 470 ILE C 30 CD1 REMARK 470 ASP C 40 CB CG OD1 OD2 REMARK 470 ASN C 51 CG OD1 ND2 REMARK 470 GLU C 55 CB CG CD OE1 OE2 REMARK 470 ILE C 56 CB CG1 CG2 CD1 REMARK 470 GLU C 58 CG CD OE1 OE2 REMARK 470 GLN C 59 CB CG CD OE1 NE2 REMARK 470 ILE C 60 CG1 CG2 CD1 REMARK 470 LYS C 62 CG CD CE NZ REMARK 470 LEU C 64 CG CD1 CD2 REMARK 470 LYS C 66 CB CG CD CE NZ REMARK 470 LEU C 67 CG CD1 CD2 REMARK 470 ILE C 68 CG1 CG2 CD1 REMARK 470 LYS C 72 CD CE NZ REMARK 470 ILE C 74 CD1 REMARK 470 LYS C 96 CG CD CE NZ REMARK 470 ARG C 109 CD NE CZ NH1 NH2 REMARK 470 ARG C 128 CZ NH1 NH2 REMARK 470 LEU C 163 CG CD1 CD2 REMARK 470 ILE D 4 CD1 REMARK 470 LEU D 8 CD1 CD2 REMARK 470 GLU D 10 CG CD OE1 OE2 REMARK 470 ASN D 11 CG OD1 ND2 REMARK 470 GLU D 12 CG CD OE1 OE2 REMARK 470 LEU D 16 CD1 CD2 REMARK 470 ARG D 18 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 22 CD1 CD2 REMARK 470 SER D 24 CB OG REMARK 470 ALA D 25 CB REMARK 470 ARG D 26 CG CD NE CZ NH1 NH2 REMARK 470 TYR D 28 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE D 30 CG1 CG2 CD1 REMARK 470 LEU D 33 CG CD1 CD2 REMARK 470 LEU D 43 CG CD1 CD2 REMARK 470 VAL D 49 CG1 CG2 REMARK 470 THR D 50 OG1 CG2 REMARK 470 ASN D 51 CG OD1 ND2 REMARK 470 ASP D 54 CG OD1 OD2 REMARK 470 GLU D 55 CG CD OE1 OE2 REMARK 470 ILE D 56 CB CG1 CG2 CD1 REMARK 470 VAL D 57 CB CG1 CG2 REMARK 470 GLU D 58 CG CD OE1 OE2 REMARK 470 GLN D 59 CG CD OE1 NE2 REMARK 470 ILE D 60 CG1 CG2 CD1 REMARK 470 LYS D 62 CG CD CE NZ REMARK 470 GLN D 63 CG CD OE1 NE2 REMARK 470 LEU D 64 CG CD1 CD2 REMARK 470 LYS D 66 CG CD CE NZ REMARK 470 LEU D 67 CG CD1 CD2 REMARK 470 VAL D 70 CG1 CG2 REMARK 470 VAL D 71 CG1 CG2 REMARK 470 LYS D 72 CG CD CE NZ REMARK 470 LEU D 73 CG CD1 CD2 REMARK 470 ILE D 74 CD1 REMARK 470 LYS D 96 CD CE NZ REMARK 470 ARG D 109 NE CZ NH1 NH2 REMARK 470 ARG D 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 130 CE NZ REMARK 470 LYS D 162 CE NZ REMARK 470 LEU D 163 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU D 16 -62.33 73.28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 14 ALA C 15 135.56 REMARK 500 ALA D 25 ARG D 26 -100.00 REMARK 500 ASN D 117 GLU D 118 -140.57 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5899 RELATED DB: TARGETDB DBREF 2FGD A 1 163 GB 30180622 CAD85235 1 163 DBREF 2FGD B 1 163 GB 30180622 CAD85235 1 163 DBREF 2FGD C 1 163 GB 30180622 CAD85235 1 163 DBREF 2FGD D 1 163 GB 30180622 CAD85235 1 163 SEQADV 2FGD GLY A -1 GB 30180622 CLONING ARTIFACT SEQADV 2FGD HIS A 0 GB 30180622 CLONING ARTIFACT SEQADV 2FGD MSE A 1 GB 30180622 MET 1 MODIFIED RESIDUE SEQADV 2FGD MSE A 9 GB 30180622 MET 9 MODIFIED RESIDUE SEQADV 2FGD MSE A 46 GB 30180622 MET 46 MODIFIED RESIDUE SEQADV 2FGD MSE A 87 GB 30180622 MET 87 MODIFIED RESIDUE SEQADV 2FGD MSE A 101 GB 30180622 MET 101 MODIFIED RESIDUE SEQADV 2FGD GLY B -1 GB 30180622 CLONING ARTIFACT SEQADV 2FGD HIS B 0 GB 30180622 CLONING ARTIFACT SEQADV 2FGD MSE B 1 GB 30180622 MET 1 MODIFIED RESIDUE SEQADV 2FGD MSE B 9 GB 30180622 MET 9 MODIFIED RESIDUE SEQADV 2FGD MSE B 46 GB 30180622 MET 46 MODIFIED RESIDUE SEQADV 2FGD MSE B 87 GB 30180622 MET 87 MODIFIED RESIDUE SEQADV 2FGD MSE B 101 GB 30180622 MET 101 MODIFIED RESIDUE SEQADV 2FGD GLY C -1 GB 30180622 CLONING ARTIFACT SEQADV 2FGD HIS C 0 GB 30180622 CLONING ARTIFACT SEQADV 2FGD MSE C 1 GB 30180622 MET 1 MODIFIED RESIDUE SEQADV 2FGD MSE C 9 GB 30180622 MET 9 MODIFIED RESIDUE SEQADV 2FGD MSE C 46 GB 30180622 MET 46 MODIFIED RESIDUE SEQADV 2FGD MSE C 87 GB 30180622 MET 87 MODIFIED RESIDUE SEQADV 2FGD MSE C 101 GB 30180622 MET 101 MODIFIED RESIDUE SEQADV 2FGD GLY D -1 GB 30180622 CLONING ARTIFACT SEQADV 2FGD HIS D 0 GB 30180622 CLONING ARTIFACT SEQADV 2FGD MSE D 1 GB 30180622 MET 1 MODIFIED RESIDUE SEQADV 2FGD MSE D 9 GB 30180622 MET 9 MODIFIED RESIDUE SEQADV 2FGD MSE D 46 GB 30180622 MET 46 MODIFIED RESIDUE SEQADV 2FGD MSE D 87 GB 30180622 MET 87 MODIFIED RESIDUE SEQADV 2FGD MSE D 101 GB 30180622 MET 101 MODIFIED RESIDUE SEQRES 1 A 165 GLY HIS MSE ARG HIS ILE ILE SER LEU LEU MSE GLU ASN SEQRES 2 A 165 GLU ALA GLY ALA LEU SER ARG VAL ALA GLY LEU PHE SER SEQRES 3 A 165 ALA ARG GLY TYR ASN ILE GLU SER LEU SER VAL ALA PRO SEQRES 4 A 165 THR GLU ASP PRO THR LEU SER ARG MSE THR LEU VAL THR SEQRES 5 A 165 ASN GLY PRO ASP GLU ILE VAL GLU GLN ILE THR LYS GLN SEQRES 6 A 165 LEU ASN LYS LEU ILE GLU VAL VAL LYS LEU ILE ASP LEU SEQRES 7 A 165 SER SER GLU GLY TYR VAL GLU ARG GLU LEU MSE LEU VAL SEQRES 8 A 165 LYS VAL ARG ALA VAL GLY LYS ASP ARG GLU GLU MSE LYS SEQRES 9 A 165 ARG LEU ALA ASP ILE PHE ARG GLY ASN ILE ILE ASP VAL SEQRES 10 A 165 THR ASN GLU LEU TYR THR ILE GLU LEU THR GLY THR ARG SEQRES 11 A 165 SER LYS LEU ASP GLY PHE LEU GLN ALA VAL ASP CYS ASN SEQRES 12 A 165 LEU ILE LEU GLU ILE ALA ARG THR GLY VAL SER GLY LEU SEQRES 13 A 165 SER ARG GLY GLU ARG VAL LEU LYS LEU SEQRES 1 B 165 GLY HIS MSE ARG HIS ILE ILE SER LEU LEU MSE GLU ASN SEQRES 2 B 165 GLU ALA GLY ALA LEU SER ARG VAL ALA GLY LEU PHE SER SEQRES 3 B 165 ALA ARG GLY TYR ASN ILE GLU SER LEU SER VAL ALA PRO SEQRES 4 B 165 THR GLU ASP PRO THR LEU SER ARG MSE THR LEU VAL THR SEQRES 5 B 165 ASN GLY PRO ASP GLU ILE VAL GLU GLN ILE THR LYS GLN SEQRES 6 B 165 LEU ASN LYS LEU ILE GLU VAL VAL LYS LEU ILE ASP LEU SEQRES 7 B 165 SER SER GLU GLY TYR VAL GLU ARG GLU LEU MSE LEU VAL SEQRES 8 B 165 LYS VAL ARG ALA VAL GLY LYS ASP ARG GLU GLU MSE LYS SEQRES 9 B 165 ARG LEU ALA ASP ILE PHE ARG GLY ASN ILE ILE ASP VAL SEQRES 10 B 165 THR ASN GLU LEU TYR THR ILE GLU LEU THR GLY THR ARG SEQRES 11 B 165 SER LYS LEU ASP GLY PHE LEU GLN ALA VAL ASP CYS ASN SEQRES 12 B 165 LEU ILE LEU GLU ILE ALA ARG THR GLY VAL SER GLY LEU SEQRES 13 B 165 SER ARG GLY GLU ARG VAL LEU LYS LEU SEQRES 1 C 165 GLY HIS MSE ARG HIS ILE ILE SER LEU LEU MSE GLU ASN SEQRES 2 C 165 GLU ALA GLY ALA LEU SER ARG VAL ALA GLY LEU PHE SER SEQRES 3 C 165 ALA ARG GLY TYR ASN ILE GLU SER LEU SER VAL ALA PRO SEQRES 4 C 165 THR GLU ASP PRO THR LEU SER ARG MSE THR LEU VAL THR SEQRES 5 C 165 ASN GLY PRO ASP GLU ILE VAL GLU GLN ILE THR LYS GLN SEQRES 6 C 165 LEU ASN LYS LEU ILE GLU VAL VAL LYS LEU ILE ASP LEU SEQRES 7 C 165 SER SER GLU GLY TYR VAL GLU ARG GLU LEU MSE LEU VAL SEQRES 8 C 165 LYS VAL ARG ALA VAL GLY LYS ASP ARG GLU GLU MSE LYS SEQRES 9 C 165 ARG LEU ALA ASP ILE PHE ARG GLY ASN ILE ILE ASP VAL SEQRES 10 C 165 THR ASN GLU LEU TYR THR ILE GLU LEU THR GLY THR ARG SEQRES 11 C 165 SER LYS LEU ASP GLY PHE LEU GLN ALA VAL ASP CYS ASN SEQRES 12 C 165 LEU ILE LEU GLU ILE ALA ARG THR GLY VAL SER GLY LEU SEQRES 13 C 165 SER ARG GLY GLU ARG VAL LEU LYS LEU SEQRES 1 D 165 GLY HIS MSE ARG HIS ILE ILE SER LEU LEU MSE GLU ASN SEQRES 2 D 165 GLU ALA GLY ALA LEU SER ARG VAL ALA GLY LEU PHE SER SEQRES 3 D 165 ALA ARG GLY TYR ASN ILE GLU SER LEU SER VAL ALA PRO SEQRES 4 D 165 THR GLU ASP PRO THR LEU SER ARG MSE THR LEU VAL THR SEQRES 5 D 165 ASN GLY PRO ASP GLU ILE VAL GLU GLN ILE THR LYS GLN SEQRES 6 D 165 LEU ASN LYS LEU ILE GLU VAL VAL LYS LEU ILE ASP LEU SEQRES 7 D 165 SER SER GLU GLY TYR VAL GLU ARG GLU LEU MSE LEU VAL SEQRES 8 D 165 LYS VAL ARG ALA VAL GLY LYS ASP ARG GLU GLU MSE LYS SEQRES 9 D 165 ARG LEU ALA ASP ILE PHE ARG GLY ASN ILE ILE ASP VAL SEQRES 10 D 165 THR ASN GLU LEU TYR THR ILE GLU LEU THR GLY THR ARG SEQRES 11 D 165 SER LYS LEU ASP GLY PHE LEU GLN ALA VAL ASP CYS ASN SEQRES 12 D 165 LEU ILE LEU GLU ILE ALA ARG THR GLY VAL SER GLY LEU SEQRES 13 D 165 SER ARG GLY GLU ARG VAL LEU LYS LEU MODRES 2FGD MSE A 1 MET SELENOMETHIONINE MODRES 2FGD MSE A 9 MET SELENOMETHIONINE MODRES 2FGD MSE A 46 MET SELENOMETHIONINE MODRES 2FGD MSE A 87 MET SELENOMETHIONINE MODRES 2FGD MSE A 101 MET SELENOMETHIONINE MODRES 2FGD MSE B 9 MET SELENOMETHIONINE MODRES 2FGD MSE B 46 MET SELENOMETHIONINE MODRES 2FGD MSE B 87 MET SELENOMETHIONINE MODRES 2FGD MSE B 101 MET SELENOMETHIONINE MODRES 2FGD MSE C 9 MET SELENOMETHIONINE MODRES 2FGD MSE C 46 MET SELENOMETHIONINE MODRES 2FGD MSE C 87 MET SELENOMETHIONINE MODRES 2FGD MSE C 101 MET SELENOMETHIONINE MODRES 2FGD MSE D 9 MET SELENOMETHIONINE MODRES 2FGD MSE D 46 MET SELENOMETHIONINE MODRES 2FGD MSE D 87 MET SELENOMETHIONINE MODRES 2FGD MSE D 101 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 9 8 HET MSE A 46 8 HET MSE A 87 8 HET MSE A 101 8 HET MSE B 9 8 HET MSE B 46 8 HET MSE B 87 8 HET MSE B 101 8 HET MSE C 9 8 HET MSE C 46 8 HET MSE C 87 8 HET MSE C 101 8 HET MSE D 9 8 HET MSE D 46 8 HET MSE D 87 8 HET MSE D 101 8 HET CA 301 1 HET CA 302 1 HET CA 303 1 HET SIN 1 8 HET SIN 2 8 HET SIN 3 8 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM SIN SUCCINIC ACID FORMUL 1 MSE 17(C5 H11 N O2 SE) FORMUL 5 CA 3(CA 2+) FORMUL 8 SIN 3(C4 H6 O4) FORMUL 11 HOH *183(H2 O) HELIX 1 1 GLY A 14 ARG A 26 1 13 HELIX 2 2 PRO A 53 LEU A 67 1 15 HELIX 3 3 SER A 77 GLU A 79 5 3 HELIX 4 4 GLY A 95 PHE A 108 1 14 HELIX 5 5 THR A 127 VAL A 138 1 12 HELIX 6 6 ASP A 139 ASN A 141 5 3 HELIX 7 7 GLY B 14 GLY B 27 1 14 HELIX 8 8 PRO B 53 LEU B 67 1 15 HELIX 9 9 SER B 77 GLU B 79 5 3 HELIX 10 10 GLY B 95 PHE B 108 1 14 HELIX 11 11 THR B 127 VAL B 138 1 12 HELIX 12 12 ASP B 139 ASN B 141 5 3 HELIX 13 13 GLY C 14 GLY C 27 1 14 HELIX 14 14 PRO C 53 LEU C 67 1 15 HELIX 15 15 SER C 77 GLU C 79 5 3 HELIX 16 16 GLY C 95 ARG C 109 1 15 HELIX 17 17 THR C 127 VAL C 138 1 12 HELIX 18 18 ASP C 139 ASN C 141 5 3 HELIX 19 19 LEU D 16 GLY D 27 1 12 HELIX 20 20 ASP D 54 ASN D 65 1 12 HELIX 21 21 ASP D 75 GLU D 79 5 5 HELIX 22 22 GLY D 95 PHE D 108 1 14 HELIX 23 23 THR D 127 VAL D 138 1 12 HELIX 24 24 ASP D 139 ASN D 141 5 3 SHEET 1 A 8 VAL A 70 ASP A 75 0 SHEET 2 A 8 MSE A 1 GLU A 10 -1 N LEU A 8 O VAL A 71 SHEET 3 A 8 LEU A 43 GLY A 52 -1 O SER A 44 N MSE A 9 SHEET 4 A 8 SER A 32 PRO A 37 -1 N SER A 34 O THR A 47 SHEET 5 A 8 ILE C 30 PRO C 37 -1 O VAL C 35 N LEU A 33 SHEET 6 A 8 LEU C 43 THR C 50 -1 O THR C 47 N SER C 34 SHEET 7 A 8 HIS C 3 GLU C 10 -1 N HIS C 3 O THR C 50 SHEET 8 A 8 VAL C 70 ASP C 75 -1 O VAL C 71 N LEU C 8 SHEET 1 B 4 ASN A 111 THR A 116 0 SHEET 2 B 4 LEU A 119 GLY A 126 -1 O GLU A 123 N ASN A 111 SHEET 3 B 4 TYR A 81 ARG A 92 -1 N VAL A 91 O TYR A 120 SHEET 4 B 4 ILE A 143 ARG A 148 -1 O ALA A 147 N LEU A 88 SHEET 1 C 4 ASN A 111 THR A 116 0 SHEET 2 C 4 LEU A 119 GLY A 126 -1 O GLU A 123 N ASN A 111 SHEET 3 C 4 TYR A 81 ARG A 92 -1 N VAL A 91 O TYR A 120 SHEET 4 C 4 SER A 152 SER A 155 -1 O LEU A 154 N VAL A 82 SHEET 1 D 8 VAL B 70 ASP B 75 0 SHEET 2 D 8 HIS B 3 GLU B 10 -1 N SER B 6 O ILE B 74 SHEET 3 D 8 LEU B 43 THR B 50 -1 O LEU B 48 N ILE B 5 SHEET 4 D 8 SER B 32 PRO B 37 -1 N ALA B 36 O ARG B 45 SHEET 5 D 8 SER D 32 PRO D 37 -1 O VAL D 35 N LEU B 33 SHEET 6 D 8 LEU D 43 VAL D 49 -1 O ARG D 45 N ALA D 36 SHEET 7 D 8 ILE D 5 GLU D 10 -1 N ILE D 5 O LEU D 48 SHEET 8 D 8 LEU D 73 ILE D 74 -1 O ILE D 74 N SER D 6 SHEET 1 E 4 ASN B 111 THR B 116 0 SHEET 2 E 4 LEU B 119 GLY B 126 -1 O GLU B 123 N ASN B 111 SHEET 3 E 4 TYR B 81 ARG B 92 -1 N VAL B 91 O TYR B 120 SHEET 4 E 4 ILE B 143 ARG B 148 -1 O GLU B 145 N LYS B 90 SHEET 1 F 4 ASN B 111 THR B 116 0 SHEET 2 F 4 LEU B 119 GLY B 126 -1 O GLU B 123 N ASN B 111 SHEET 3 F 4 TYR B 81 ARG B 92 -1 N VAL B 91 O TYR B 120 SHEET 4 F 4 SER B 152 SER B 155 -1 O SER B 152 N ARG B 84 SHEET 1 G 4 ASN C 111 VAL C 115 0 SHEET 2 G 4 LEU C 119 GLY C 126 -1 O GLU C 123 N ASN C 111 SHEET 3 G 4 TYR C 81 ARG C 92 -1 N MSE C 87 O LEU C 124 SHEET 4 G 4 ILE C 143 ARG C 148 -1 O LEU C 144 N LYS C 90 SHEET 1 H 4 ASN C 111 VAL C 115 0 SHEET 2 H 4 LEU C 119 GLY C 126 -1 O GLU C 123 N ASN C 111 SHEET 3 H 4 TYR C 81 ARG C 92 -1 N MSE C 87 O LEU C 124 SHEET 4 H 4 SER C 152 SER C 155 -1 O LEU C 154 N VAL C 82 SHEET 1 I 4 ASN D 111 VAL D 115 0 SHEET 2 I 4 LEU D 119 GLY D 126 -1 O GLU D 123 N ASN D 111 SHEET 3 I 4 TYR D 81 ARG D 92 -1 N MSE D 87 O LEU D 124 SHEET 4 I 4 ILE D 143 ARG D 148 -1 O ALA D 147 N LEU D 88 SHEET 1 J 4 ASN D 111 VAL D 115 0 SHEET 2 J 4 LEU D 119 GLY D 126 -1 O GLU D 123 N ASN D 111 SHEET 3 J 4 TYR D 81 ARG D 92 -1 N MSE D 87 O LEU D 124 SHEET 4 J 4 SER D 152 SER D 155 -1 O LEU D 154 N VAL D 82 CISPEP 1 THR D 50 ASN D 51 0 -10.70 CRYST1 122.123 122.123 111.559 90.00 90.00 90.00 P 42 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008188 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008964 0.00000